Wall clock time and date at job start Mon Mar 30 2020 06:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38218 * 119.98889 * 2 1 4 4 C 1.38443 * 119.97582 * 180.27475 * 3 2 1 5 5 F 1.35098 * 120.02404 * 179.77081 * 4 3 2 6 6 C 1.38478 * 119.94395 * 359.74874 * 4 3 2 7 7 C 1.38175 * 119.97630 * 359.97438 * 6 4 3 8 8 C 1.38221 * 119.98732 * 179.76677 * 2 1 3 9 9 C 1.50700 * 119.97428 * 0.02562 * 8 2 1 10 10 H 1.09000 * 110.42086 * 33.86180 * 9 8 2 11 11 C 1.54485 * 110.37053 * 271.55726 * 9 8 2 12 12 C 1.54507 * 104.06070 * 217.18878 * 11 9 8 13 13 C 1.54480 * 104.06663 * 359.97438 * 12 11 9 14 14 H 1.08997 * 110.46654 * 265.10532 * 13 12 11 15 15 C 1.50694 * 110.37228 * 142.80965 * 13 12 11 16 16 H 1.08000 * 120.00563 * 3.16730 * 15 13 12 17 17 C 1.37885 * 119.99902 * 183.16894 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 O 1.44420 * 110.37495 * 156.17668 * 9 8 2 24 24 H 1.08998 * 109.47361 * 270.23127 * 1 2 3 25 25 H 1.09006 * 109.46811 * 30.23216 * 1 2 3 26 26 H 1.08997 * 109.46886 * 150.22950 * 1 2 3 27 27 H 1.08001 * 120.01425 * 0.04927 * 3 2 1 28 28 H 1.07999 * 120.00821 * 179.97438 * 6 4 3 29 29 H 1.08001 * 119.98655 * 180.02562 * 7 6 4 30 30 H 1.08996 * 110.50781 * 335.83585 * 11 9 8 31 31 H 1.09005 * 110.50976 * 98.40749 * 11 9 8 32 32 H 1.09005 * 110.51114 * 241.35797 * 12 11 9 33 33 H 1.08995 * 110.51057 * 118.64527 * 12 11 9 34 34 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1971 0.0000 4 6 3.5823 1.1968 -0.0058 5 9 4.2585 2.3664 -0.0104 6 6 4.2732 -0.0033 -0.0062 7 6 3.5805 -1.1988 -0.0004 8 6 2.1978 -1.1972 0.0049 9 6 1.4435 -2.5018 0.0096 10 1 0.5190 -2.4086 -0.5603 11 6 1.1397 -2.9420 1.4589 12 6 1.2994 -4.4784 1.4258 13 6 1.6802 -4.7848 -0.0397 14 1 0.7930 -5.0428 -0.6180 15 6 2.6866 -5.9050 -0.0969 16 1 2.9950 -6.4010 0.8115 17 6 3.2140 -6.2966 -1.3093 18 7 2.8382 -5.6929 -2.4156 19 14 4.4621 -7.6846 -1.3802 20 1 5.8316 -7.1262 -1.2464 21 1 4.2057 -8.6380 -0.2709 22 1 4.3411 -8.3931 -2.6797 23 8 2.2641 -3.5591 -0.5329 24 1 -0.3634 0.0041 1.0276 25 1 -0.3633 0.8880 -0.5175 26 1 -0.3633 -0.8920 -0.5103 27 1 1.6579 2.1325 0.0008 28 1 5.3532 -0.0047 -0.0111 29 1 4.1192 -2.1348 -0.0004 30 1 1.8555 -2.4983 2.1508 31 1 0.1217 -2.6676 1.7360 32 1 0.3597 -4.9658 1.6857 33 1 2.0942 -4.7944 2.1014 34 1 3.2095 -5.9682 -3.2684 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393753222.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:04 Heat of formation + Delta-G solvation = -77.345438 kcal Electronic energy + Delta-G solvation = -18153.845116 eV Core-core repulsion = 15158.602190 eV Total energy + Delta-G solvation = -2995.242926 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.70199 -39.52195 -37.54356 -32.94242 -32.55229 -30.99798 -30.79958 -27.87831 -26.77965 -24.61273 -22.50819 -21.53959 -20.43410 -19.76881 -17.11977 -16.75945 -16.30547 -15.45844 -15.38221 -15.11886 -14.43421 -14.03257 -13.84923 -13.50328 -13.05196 -12.97541 -12.93073 -12.50058 -12.16052 -11.87284 -11.71159 -11.31414 -10.95471 -10.81307 -10.66904 -10.50183 -10.31423 -10.06972 -9.69679 -9.16008 -8.67029 -8.63793 -8.27012 -8.04535 -6.04837 -4.17796 1.39401 1.49913 3.29170 3.35945 3.38177 3.82056 4.39303 4.44394 4.78775 5.00618 5.03512 5.24475 5.33199 5.39494 5.53272 5.60468 5.65804 5.73284 5.77494 5.92550 6.12014 6.19481 6.26430 6.35804 6.38198 6.46178 6.62008 6.64951 6.75209 6.77347 7.00639 7.19030 7.46291 7.85140 8.16915 8.46474 8.92965 9.52962 11.02760 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.027030 B = 0.006135 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.634286 B = 4563.122368 C = 5166.781918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.058 4.058 3 C -0.161 4.161 4 C 0.086 3.914 5 F -0.148 7.148 6 C -0.163 4.163 7 C -0.057 4.057 8 C -0.074 4.074 9 C 0.100 3.900 10 H 0.064 0.936 11 C -0.141 4.141 12 C -0.146 4.146 13 C 0.206 3.794 14 H 0.026 0.974 15 C -0.531 4.531 16 H 0.064 0.936 17 C 0.077 3.923 18 N -0.862 5.862 19 Si 0.892 3.108 20 H -0.279 1.279 21 H -0.272 1.272 22 H -0.285 1.285 23 O -0.342 6.342 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.146 0.854 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.170 10.834 5.322 12.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.059 4.059 3 C -0.180 4.180 4 C 0.067 3.933 5 F -0.127 7.127 6 C -0.182 4.182 7 C -0.075 4.075 8 C -0.074 4.074 9 C 0.041 3.959 10 H 0.082 0.918 11 C -0.179 4.179 12 C -0.184 4.184 13 C 0.150 3.850 14 H 0.044 0.956 15 C -0.569 4.569 16 H 0.082 0.918 17 C -0.129 4.129 18 N -0.498 5.498 19 Si 0.719 3.281 20 H -0.205 1.205 21 H -0.197 1.197 22 H -0.211 1.211 23 O -0.262 6.262 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.164 0.836 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.946 10.899 4.983 12.340 hybrid contribution 0.733 -0.417 -0.029 0.844 sum -2.212 10.481 4.954 11.802 Atomic orbital electron populations 1.20870 0.90824 1.03204 1.02515 1.19502 0.96209 0.91530 0.98618 1.20820 0.92100 0.98759 1.06321 1.17669 0.90151 0.81074 1.04363 1.91451 1.80454 1.46536 1.94228 1.21157 1.00687 0.91256 1.05075 1.21085 0.93894 0.97980 0.94505 1.19847 0.94058 0.94113 0.99383 1.21658 0.93452 0.87298 0.93510 0.91837 1.22902 1.00545 0.97559 0.96925 1.23054 1.00549 0.93208 1.01622 1.20536 0.94406 0.83460 0.86565 0.95606 1.21027 1.27041 1.15489 0.93299 0.91759 1.25086 0.96089 0.95991 0.95726 1.70035 1.41846 1.39955 0.97978 0.86618 0.81868 0.82132 0.77504 1.20468 1.19727 1.21108 1.89525 1.50633 1.14286 1.71718 0.90902 0.91610 0.90533 0.85284 0.85124 0.83587 0.91878 0.92103 0.92624 0.91644 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.60 36.01 0.35 -1.05 16 2 C -0.06 -0.87 5.88 -104.64 -0.62 -1.49 16 3 C -0.16 -2.28 9.68 -39.51 -0.38 -2.67 16 4 C 0.09 1.32 7.30 -39.42 -0.29 1.03 16 5 F -0.15 -2.21 17.27 2.25 0.04 -2.17 16 6 C -0.16 -2.57 10.03 -39.52 -0.40 -2.97 16 7 C -0.06 -1.02 9.37 -39.60 -0.37 -1.39 16 8 C -0.07 -1.30 4.99 -104.62 -0.52 -1.82 16 9 C 0.10 1.94 3.01 -27.10 -0.08 1.86 16 10 H 0.06 1.19 6.17 -51.93 -0.32 0.87 16 11 C -0.14 -2.46 6.62 -25.16 -0.17 -2.63 16 12 C -0.15 -2.95 6.61 -25.16 -0.17 -3.11 16 13 C 0.21 5.16 3.11 -27.11 -0.08 5.07 16 14 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 15 C -0.53 -14.58 8.78 -34.44 -0.30 -14.88 16 16 H 0.06 1.71 7.59 -52.49 -0.40 1.31 16 17 C 0.08 2.15 5.42 -17.82 -0.10 2.05 16 18 N -0.86 -25.24 12.94 55.43 0.72 -24.52 16 19 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 23 O -0.34 -8.55 9.42 -35.23 -0.33 -8.88 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 26 H 0.08 0.95 6.03 -51.93 -0.31 0.64 16 27 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.15 2.86 7.35 -52.49 -0.39 2.48 16 30 H 0.06 1.06 7.86 -51.93 -0.41 0.66 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.33 7.73 -51.93 -0.40 0.93 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 288.70 15.07 4.35 4.35 Total: -1.00 -29.63 288.70 -7.69 -37.32 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.32 Total: -0.14 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -3.13 Total: -22.00 kcal Atomic # 7 Polarization: -25.24 SS G_CDS: 0.72 Total: -24.52 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.33 Total: -8.88 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.63 -7.69 -37.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393753222.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.027 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds