Wall clock time and date at job start Mon Mar 30 2020 06:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38214 * 120.01453 * 2 1 4 4 C 1.38221 * 120.02904 * 180.02562 * 3 2 1 5 5 C 1.38269 * 120.04937 * 0.02834 * 4 3 2 6 6 C 1.38180 * 120.02606 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.01139 * 179.97438 * 6 5 4 8 8 H 1.09003 * 110.41409 * 142.69668 * 7 6 5 9 9 C 1.54482 * 110.37055 * 264.99797 * 7 6 5 10 10 C 1.54515 * 104.05712 * 142.81170 * 9 7 6 11 11 C 1.54478 * 104.06207 * 0.02562 * 10 9 7 12 12 H 1.09001 * 110.37514 * 94.96445 * 11 10 9 13 13 C 1.50703 * 110.36937 * 217.18762 * 11 10 9 14 14 H 1.08006 * 120.00159 * 358.44850 * 13 11 10 15 15 C 1.37877 * 120.00120 * 178.45219 * 13 11 10 16 16 N 1.31514 * 120.00089 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99938 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 O 1.44415 * 104.90150 * 336.07365 * 11 10 9 22 22 C 1.38440 * 120.01101 * 180.32143 * 2 1 3 23 23 F 1.35102 * 120.02588 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.47160 * 89.99584 * 1 2 3 25 25 H 1.08998 * 109.46940 * 210.00063 * 1 2 3 26 26 H 1.09003 * 109.46489 * 329.99875 * 1 2 3 27 27 H 1.08008 * 119.98791 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.97789 * 180.02562 * 4 3 2 29 29 H 1.08002 * 119.99076 * 179.97438 * 5 4 3 30 30 H 1.08994 * 110.50831 * 24.17396 * 9 7 6 31 31 H 1.09000 * 110.63298 * 261.51189 * 9 7 6 32 32 H 1.08998 * 110.51613 * 241.35638 * 10 9 7 33 33 H 1.09003 * 110.50518 * 118.64688 * 10 9 7 34 34 H 0.96998 * 119.99255 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2733 0.0005 -0.0017 6 6 3.5843 -1.1973 -0.0017 7 6 4.3396 -2.5013 -0.0035 8 1 3.8277 -3.2380 0.6156 9 6 4.4981 -3.0289 -1.4468 10 6 5.9104 -3.6555 -1.4643 11 6 6.4376 -3.4329 -0.0294 12 1 6.2493 -4.3133 0.5849 13 6 7.9111 -3.1176 -0.0550 14 1 8.4435 -3.1005 -0.9945 15 6 8.5796 -2.8512 1.1211 16 7 7.9313 -2.8717 2.2652 17 14 10.4058 -2.4598 1.0893 18 1 11.1841 -3.7176 1.2221 19 1 10.7371 -1.5514 2.2164 20 1 10.7483 -1.7992 -0.1959 21 8 5.6902 -2.3024 0.4696 22 6 2.1995 -1.1988 -0.0067 23 9 1.5247 -2.3692 -0.0128 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8900 0.5139 27 1 1.6584 2.1322 0.0004 28 1 4.1200 2.1328 -0.0001 29 1 5.3533 0.0018 -0.0025 30 1 4.4352 -2.2090 -2.1622 31 1 3.7427 -3.7838 -1.6650 32 1 6.5457 -3.1454 -2.1884 33 1 5.8528 -4.7206 -1.6888 34 1 6.9829 -3.0746 2.2815 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394992299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:06 Heat of formation + Delta-G solvation = -84.130103 kcal Electronic energy + Delta-G solvation = -18297.539781 eV Core-core repulsion = 15302.002650 eV Total energy + Delta-G solvation = -2995.537131 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.69960 -39.32011 -37.90434 -33.37467 -32.40386 -31.23028 -30.75020 -27.67576 -26.79905 -24.48032 -22.38224 -21.79117 -20.43932 -20.00884 -17.45247 -17.00757 -16.38496 -15.64520 -15.34541 -15.13205 -14.13268 -13.99186 -13.72871 -13.45763 -13.40340 -13.09266 -12.90496 -12.78542 -12.36667 -11.95926 -11.60959 -11.35858 -11.08996 -10.80513 -10.62710 -10.50791 -10.37017 -10.07599 -9.90582 -8.94105 -8.58004 -8.47906 -8.39702 -8.20975 -6.38691 -4.17433 1.34467 1.40728 3.42415 3.46603 3.62531 3.75935 4.39234 4.50864 4.64933 4.81325 5.07768 5.11851 5.29069 5.44243 5.45916 5.51173 5.52537 5.60693 5.64144 5.78697 6.01298 6.06621 6.14209 6.24106 6.31769 6.44284 6.50540 6.59485 6.65275 6.67407 6.80393 7.11735 7.22108 7.97903 8.24323 8.42524 8.84430 9.64623 11.02272 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.032796 B = 0.006059 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.568096 B = 4619.985570 C = 5062.068586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.129 4.129 3 C -0.103 4.103 4 C -0.130 4.130 5 C -0.068 4.068 6 C -0.096 4.096 7 C 0.105 3.895 8 H 0.063 0.937 9 C -0.141 4.141 10 C -0.137 4.137 11 C 0.187 3.813 12 H 0.020 0.980 13 C -0.604 4.604 14 H 0.058 0.942 15 C 0.031 3.969 16 N -0.890 5.890 17 Si 1.072 2.928 18 H -0.287 1.287 19 H -0.283 1.283 20 H -0.288 1.288 21 O -0.359 6.359 22 C 0.095 3.905 23 F -0.140 7.140 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.145 0.855 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.020 5.893 -5.523 14.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.130 4.130 3 C -0.121 4.121 4 C -0.148 4.148 5 C -0.086 4.086 6 C -0.097 4.097 7 C 0.046 3.954 8 H 0.081 0.919 9 C -0.179 4.179 10 C -0.175 4.175 11 C 0.132 3.868 12 H 0.037 0.963 13 C -0.641 4.641 14 H 0.076 0.924 15 C -0.178 4.178 16 N -0.525 5.525 17 Si 0.900 3.100 18 H -0.213 1.213 19 H -0.209 1.209 20 H -0.214 1.214 21 O -0.279 6.279 22 C 0.076 3.924 23 F -0.118 7.118 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.163 0.837 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.688 6.390 -4.431 13.217 hybrid contribution -1.575 -0.774 -1.120 2.082 sum -12.263 5.615 -5.551 14.585 Atomic orbital electron populations 1.20665 0.90502 1.02980 1.02399 1.19793 0.96617 0.91903 1.04658 1.20836 0.94204 0.96600 1.00488 1.21232 0.94018 0.98399 1.01128 1.21125 1.01715 0.90331 0.95401 1.19952 0.91148 0.97072 1.01528 1.21491 0.88028 0.91437 0.94486 0.91927 1.22893 0.98350 1.00059 0.96592 1.22915 0.94177 0.99338 1.01075 1.20735 0.92319 0.85733 0.88048 0.96279 1.21927 0.91058 1.55201 0.95940 0.92418 1.25900 1.06454 0.93157 0.92240 1.70647 1.12617 1.42110 1.27089 0.83513 0.74063 0.76836 0.75558 1.21347 1.20896 1.21379 1.89475 1.15608 1.47786 1.75009 1.17327 0.89157 0.80934 1.04998 1.91437 1.80204 1.46219 1.93990 0.91192 0.91432 0.91231 0.85542 0.85483 0.83706 0.91701 0.91812 0.91401 0.92491 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.83 36.01 0.35 -0.80 16 2 C -0.13 -1.80 5.89 -104.55 -0.62 -2.41 16 3 C -0.10 -1.32 9.70 -39.60 -0.38 -1.71 16 4 C -0.13 -1.85 10.04 -39.58 -0.40 -2.25 16 5 C -0.07 -1.21 9.38 -39.59 -0.37 -1.58 16 6 C -0.10 -1.80 5.01 -104.56 -0.52 -2.32 16 7 C 0.10 2.19 3.24 -27.11 -0.09 2.10 16 8 H 0.06 1.32 7.92 -51.93 -0.41 0.91 16 9 C -0.14 -2.68 6.62 -25.16 -0.17 -2.85 16 10 C -0.14 -2.93 6.62 -25.16 -0.17 -3.09 16 11 C 0.19 4.84 2.63 -27.11 -0.07 4.77 16 12 H 0.02 0.53 8.00 -51.93 -0.42 0.12 16 13 C -0.60 -17.15 8.78 -34.44 -0.30 -17.46 16 14 H 0.06 1.61 7.58 -52.48 -0.40 1.21 16 15 C 0.03 0.89 5.42 -17.82 -0.10 0.79 16 16 N -0.89 -27.35 13.57 55.43 0.75 -26.60 16 17 Si 1.07 25.13 29.90 -169.99 -5.08 20.05 16 18 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 21 O -0.36 -9.17 8.81 -35.23 -0.31 -9.48 16 22 C 0.10 1.59 7.19 -39.42 -0.28 1.31 16 23 F -0.14 -2.35 15.86 2.25 0.04 -2.31 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.73 7.65 -51.93 -0.40 0.33 16 26 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 27 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 28 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.15 2.86 7.28 -52.49 -0.38 2.48 16 30 H 0.06 1.18 7.86 -51.93 -0.41 0.77 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.46 7.72 -51.93 -0.40 1.05 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.28 8.70 6.62 -40.82 -0.27 8.43 16 LS Contribution 289.07 15.07 4.36 4.36 Total: -1.00 -31.06 289.07 -7.77 -38.83 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -4.41 Total: 0.65 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: -3.11 Total: -25.50 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.75 Total: -26.60 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.31 Total: -9.48 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.08 Total: 20.05 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.06 -7.77 -38.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394992299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.297 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds