Wall clock time and date at job start Mon Mar 30 2020 06:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38214 * 120.01453 * 2 1 4 4 C 1.38221 * 120.02904 * 180.02562 * 3 2 1 5 5 C 1.38269 * 120.04937 * 0.02834 * 4 3 2 6 6 C 1.38180 * 120.02606 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.01139 * 179.97438 * 6 5 4 8 8 H 1.09003 * 110.41409 * 142.69668 * 7 6 5 9 9 C 1.54482 * 110.37055 * 264.99797 * 7 6 5 10 10 C 1.54515 * 104.05712 * 142.81170 * 9 7 6 11 11 C 1.54478 * 104.06207 * 0.02562 * 10 9 7 12 12 H 1.09001 * 110.37514 * 94.96445 * 11 10 9 13 13 C 1.50703 * 110.36937 * 217.18762 * 11 10 9 14 14 H 1.08006 * 120.00159 * 358.44850 * 13 11 10 15 15 C 1.37877 * 120.00120 * 178.45219 * 13 11 10 16 16 N 1.31514 * 120.00089 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99938 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 O 1.44415 * 104.90150 * 336.07365 * 11 10 9 22 22 C 1.38440 * 120.01101 * 180.32143 * 2 1 3 23 23 F 1.35102 * 120.02588 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.47160 * 89.99584 * 1 2 3 25 25 H 1.08998 * 109.46940 * 210.00063 * 1 2 3 26 26 H 1.09003 * 109.46489 * 329.99875 * 1 2 3 27 27 H 1.08008 * 119.98791 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.97789 * 180.02562 * 4 3 2 29 29 H 1.08002 * 119.99076 * 179.97438 * 5 4 3 30 30 H 1.08994 * 110.50831 * 24.17396 * 9 7 6 31 31 H 1.09000 * 110.63298 * 261.51189 * 9 7 6 32 32 H 1.08998 * 110.51613 * 241.35638 * 10 9 7 33 33 H 1.09003 * 110.50518 * 118.64688 * 10 9 7 34 34 H 0.96998 * 119.99255 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2733 0.0005 -0.0017 6 6 3.5843 -1.1973 -0.0017 7 6 4.3396 -2.5013 -0.0035 8 1 3.8277 -3.2380 0.6156 9 6 4.4981 -3.0289 -1.4468 10 6 5.9104 -3.6555 -1.4643 11 6 6.4376 -3.4329 -0.0294 12 1 6.2493 -4.3133 0.5849 13 6 7.9111 -3.1176 -0.0550 14 1 8.4435 -3.1005 -0.9945 15 6 8.5796 -2.8512 1.1211 16 7 7.9313 -2.8717 2.2652 17 14 10.4058 -2.4598 1.0893 18 1 11.1841 -3.7176 1.2221 19 1 10.7371 -1.5514 2.2164 20 1 10.7483 -1.7992 -0.1959 21 8 5.6902 -2.3024 0.4696 22 6 2.1995 -1.1988 -0.0067 23 9 1.5247 -2.3692 -0.0128 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8900 0.5139 27 1 1.6584 2.1322 0.0004 28 1 4.1200 2.1328 -0.0001 29 1 5.3533 0.0018 -0.0025 30 1 4.4352 -2.2090 -2.1622 31 1 3.7427 -3.7838 -1.6650 32 1 6.5457 -3.1454 -2.1884 33 1 5.8528 -4.7206 -1.6888 34 1 6.9829 -3.0746 2.2815 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394992299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:06 Heat of formation + Delta-G solvation = -101.689438 kcal Electronic energy + Delta-G solvation = -18298.301211 eV Core-core repulsion = 15302.002650 eV Total energy + Delta-G solvation = -2996.298561 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.97494 -40.79369 -39.45371 -35.20421 -33.89149 -32.95192 -32.17907 -29.40279 -27.85093 -26.37368 -24.06548 -23.10420 -22.11291 -21.52582 -19.31705 -18.46502 -17.78575 -17.11415 -16.71327 -16.68201 -15.79091 -15.65455 -15.52903 -14.98733 -14.58452 -14.41051 -14.30656 -14.22406 -13.48755 -13.43805 -13.12339 -12.71072 -12.64197 -12.50430 -12.23910 -12.19455 -11.91896 -11.89425 -11.58352 -10.88932 -10.72350 -10.34082 -9.70127 -9.60853 -8.69400 -6.48793 0.12580 0.20400 1.52047 1.61771 1.79628 2.53519 2.55713 2.94018 3.22492 3.36470 3.58837 3.73724 3.87659 3.93898 4.01016 4.17716 4.23754 4.35384 4.41913 4.56144 4.68040 4.76419 4.79027 4.81334 4.88747 5.00755 5.03845 5.21098 5.25983 5.29264 5.41095 5.48439 5.86936 5.93201 6.05716 6.34226 6.54740 7.43617 8.70476 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.032796 B = 0.006059 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.568096 B = 4619.985570 C = 5062.068586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.121 4.121 3 C -0.089 4.089 4 C -0.121 4.121 5 C -0.095 4.095 6 C -0.122 4.122 7 C 0.098 3.902 8 H 0.050 0.950 9 C -0.128 4.128 10 C -0.130 4.130 11 C 0.176 3.824 12 H -0.010 1.010 13 C -0.620 4.620 14 H 0.060 0.940 15 C -0.022 4.022 16 N -0.919 5.919 17 Si 1.123 2.877 18 H -0.268 1.268 19 H -0.284 1.284 20 H -0.268 1.268 21 O -0.385 6.385 22 C 0.078 3.922 23 F -0.145 7.145 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.173 0.827 28 H 0.155 0.845 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.408 7.804 -6.761 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.122 4.122 3 C -0.106 4.106 4 C -0.139 4.139 5 C -0.113 4.113 6 C -0.123 4.123 7 C 0.040 3.960 8 H 0.068 0.932 9 C -0.166 4.166 10 C -0.167 4.167 11 C 0.121 3.879 12 H 0.007 0.993 13 C -0.657 4.657 14 H 0.078 0.922 15 C -0.223 4.223 16 N -0.555 5.555 17 Si 0.943 3.057 18 H -0.193 1.193 19 H -0.209 1.209 20 H -0.193 1.193 21 O -0.305 6.305 22 C 0.058 3.942 23 F -0.124 7.124 24 H 0.105 0.895 25 H 0.080 0.920 26 H 0.116 0.884 27 H 0.191 0.809 28 H 0.173 0.827 29 H 0.130 0.870 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.100 8.287 -5.691 15.731 hybrid contribution -1.269 -1.334 -0.740 1.984 sum -13.369 6.953 -6.430 16.384 Atomic orbital electron populations 1.20781 0.87732 1.04157 1.03800 1.20282 0.98598 0.90987 1.02329 1.21343 0.93501 0.97977 0.97803 1.21532 0.95063 0.97881 0.99381 1.20978 1.00388 0.91861 0.98098 1.19821 0.92167 0.95998 1.04270 1.21622 0.86003 0.93183 0.95216 0.93192 1.22829 0.97409 1.00790 0.95536 1.22809 0.95331 1.00780 0.97813 1.20667 0.92000 0.84886 0.90353 0.99254 1.22327 0.92739 1.54535 0.96090 0.92212 1.27504 1.10763 0.92233 0.91778 1.70787 1.11696 1.44779 1.28189 0.82893 0.68941 0.77531 0.76331 1.19342 1.20942 1.19299 1.89392 1.18077 1.47229 1.75803 1.17501 0.88466 0.81952 1.06243 1.91416 1.80055 1.46747 1.94170 0.89521 0.91988 0.88400 0.80942 0.82714 0.86977 0.90656 0.89340 0.91581 0.90629 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.83 71.24 0.70 -1.16 16 2 C -0.12 -3.01 5.89 -19.82 -0.12 -3.13 16 3 C -0.09 -1.91 9.70 22.26 0.22 -1.69 16 4 C -0.12 -3.18 10.04 22.27 0.22 -2.96 16 5 C -0.09 -3.45 9.38 22.26 0.21 -3.24 16 6 C -0.12 -4.64 5.01 -19.82 -0.10 -4.74 16 7 C 0.10 4.28 3.24 30.35 0.10 4.38 16 8 H 0.05 2.24 7.92 -2.39 -0.02 2.22 16 9 C -0.13 -4.87 6.62 31.61 0.21 -4.66 16 10 C -0.13 -5.60 6.62 31.61 0.21 -5.39 16 11 C 0.18 9.58 2.63 30.35 0.08 9.66 16 12 H -0.01 -0.59 8.00 -2.39 -0.02 -0.61 16 13 C -0.62 -36.31 8.78 25.60 0.22 -36.09 16 14 H 0.06 3.38 7.58 -2.91 -0.02 3.36 16 15 C -0.02 -1.29 5.42 84.65 0.46 -0.83 16 16 N -0.92 -58.83 13.57 21.45 0.29 -58.54 16 17 Si 1.12 50.99 29.90 68.60 2.05 53.04 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 O -0.38 -20.82 8.81 -148.98 -1.31 -22.13 16 22 C 0.08 2.53 7.19 22.38 0.16 2.69 16 23 F -0.15 -4.81 15.86 44.97 0.71 -4.10 16 24 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 1.16 7.65 -2.39 -0.02 1.14 16 26 H 0.10 1.17 8.09 -2.39 -0.02 1.15 16 27 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 28 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 29 H 0.11 4.73 7.28 -2.91 -0.02 4.71 16 30 H 0.07 2.70 7.86 -2.39 -0.02 2.68 16 31 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.07 2.85 7.72 -2.39 -0.02 2.83 16 33 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.26 17.29 6.62 -92.71 -0.61 16.68 16 Total: -1.00 -71.19 289.07 5.56 -65.62 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 1.25 Total: 13.25 kcal Atomic # 6 Polarization: -49.72 SS G_CDS: 2.57 Total: -47.15 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.29 Total: -58.54 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -1.31 Total: -22.13 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.71 Total: -4.10 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 2.05 Total: 53.04 kcal Total: -71.19 5.56 -65.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394992299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.066 kcal (2) G-P(sol) polarization free energy of solvation -71.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds