Wall clock time and date at job start Mon Mar 30 2020 06:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38218 * 120.01377 * 2 1 4 4 C 1.38223 * 120.02702 * 179.97438 * 3 2 1 5 5 C 1.38268 * 120.05187 * 0.02562 * 4 3 2 6 6 C 1.38180 * 120.02276 * 359.96226 * 5 4 3 7 7 C 1.50696 * 120.01205 * 180.02562 * 6 5 4 8 8 H 1.08999 * 110.27653 * 142.90971 * 7 6 5 9 9 C 1.54949 * 110.30926 * 264.99796 * 7 6 5 10 10 C 1.55306 * 100.93968 * 155.46038 * 9 7 6 11 11 C 1.54387 * 102.25523 * 325.86617 * 10 9 7 12 12 H 1.08998 * 109.82889 * 261.84867 * 11 10 9 13 13 C 1.50698 * 109.83178 * 140.86791 * 11 10 9 14 14 H 1.08005 * 119.99898 * 0.02562 * 13 11 10 15 15 C 1.37880 * 120.00024 * 179.97438 * 13 11 10 16 16 N 1.31509 * 119.99677 * 180.02562 * 15 13 11 17 17 Si 1.86799 * 119.99927 * 0.02562 * 15 13 11 18 18 H 1.48503 * 109.46958 * 89.99630 * 17 15 13 19 19 H 1.48498 * 109.47056 * 209.99659 * 17 15 13 20 20 H 1.48503 * 109.47023 * 329.99732 * 17 15 13 21 21 O 1.43243 * 107.58660 * 21.35629 * 11 10 9 22 22 C 1.38441 * 120.01026 * 180.22575 * 2 1 3 23 23 F 1.35093 * 120.02531 * 0.04214 * 22 2 1 24 24 H 1.08996 * 109.46985 * 90.00096 * 1 2 3 25 25 H 1.08999 * 109.47651 * 210.00571 * 1 2 3 26 26 H 1.08999 * 109.47114 * 330.00844 * 1 2 3 27 27 H 1.08004 * 119.98403 * 359.94928 * 3 2 1 28 28 H 1.08005 * 119.97731 * 179.97438 * 4 3 2 29 29 H 1.07990 * 119.99209 * 179.97438 * 5 4 3 30 30 H 1.08996 * 111.12558 * 37.54471 * 9 7 6 31 31 H 1.09003 * 111.15952 * 273.39218 * 9 7 6 32 32 H 1.09002 * 110.84953 * 207.68170 * 10 9 7 33 33 H 1.08998 * 110.84977 * 84.05947 * 10 9 7 34 34 H 0.96999 * 119.99713 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2733 0.0005 0.0005 6 6 3.5843 -1.1972 0.0008 7 6 4.3395 -2.5013 0.0014 8 1 3.8229 -3.2367 0.6181 9 6 4.4996 -3.0307 -1.4461 10 6 5.7642 -3.9197 -1.2965 11 6 6.5856 -3.1466 -0.2424 12 1 7.3427 -2.5382 -0.7370 13 6 7.2447 -4.1164 0.7042 14 1 7.0998 -5.1790 0.5761 15 6 8.0337 -3.6473 1.7330 16 7 8.6093 -4.4937 2.5587 17 14 8.2848 -1.8095 1.9541 18 1 7.2295 -1.2698 2.8487 19 1 9.6192 -1.5612 2.5566 20 1 8.2054 -1.1366 0.6327 21 8 5.6797 -2.3033 0.4789 22 6 2.1994 -1.1988 -0.0047 23 9 1.5247 -2.3692 -0.0102 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5137 27 1 1.6583 2.1322 -0.0008 28 1 4.1201 2.1328 0.0001 29 1 5.3532 0.0019 0.0005 30 1 4.6744 -2.2137 -2.1460 31 1 3.6357 -3.6238 -1.7459 32 1 6.3067 -3.9845 -2.2397 33 1 5.4998 -4.9120 -0.9308 34 1 9.1640 -4.1636 3.2827 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394992307.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:12 Heat of formation + Delta-G solvation = -73.918010 kcal Electronic energy + Delta-G solvation = -18379.673534 eV Core-core repulsion = 15384.579233 eV Total energy + Delta-G solvation = -2995.094302 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.73538 -39.42486 -38.02471 -33.28036 -32.36563 -31.41668 -30.90900 -28.32394 -26.88913 -24.83619 -22.39584 -21.71222 -20.50328 -19.88448 -17.43735 -16.83782 -16.60882 -15.77184 -15.57342 -15.12325 -14.73704 -14.07771 -13.69715 -13.44762 -13.26996 -13.14532 -12.63435 -12.55792 -12.39453 -12.23402 -11.98690 -11.58162 -11.18956 -10.95260 -10.70816 -10.58005 -10.52664 -9.98201 -9.75709 -9.48367 -8.64244 -8.60669 -8.49123 -8.15177 -6.09550 -4.18396 1.27365 1.32176 3.40685 3.46711 3.55446 3.67407 4.32706 4.48914 4.58352 4.74588 4.96049 5.02790 5.22038 5.31872 5.36204 5.40426 5.47395 5.53372 5.62254 5.73673 5.99301 6.01333 6.07384 6.15094 6.26418 6.36244 6.38620 6.46258 6.53084 6.67613 6.70906 7.03207 7.26004 7.63178 8.17973 8.44998 8.91211 9.54487 11.01265 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.029015 B = 0.007065 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.794665 B = 3962.357675 C = 4451.125905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.127 4.127 3 C -0.103 4.103 4 C -0.130 4.130 5 C -0.075 4.075 6 C -0.103 4.103 7 C 0.122 3.878 8 H 0.075 0.925 9 C -0.145 4.145 10 C -0.133 4.133 11 C 0.166 3.834 12 H 0.045 0.955 13 C -0.531 4.531 14 H 0.077 0.923 15 C 0.083 3.917 16 N -0.894 5.894 17 Si 0.899 3.101 18 H -0.274 1.274 19 H -0.299 1.299 20 H -0.265 1.265 21 O -0.383 6.383 22 C 0.098 3.902 23 F -0.138 7.138 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.139 0.861 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.449 10.715 -7.182 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.127 4.127 3 C -0.121 4.121 4 C -0.148 4.148 5 C -0.093 4.093 6 C -0.104 4.104 7 C 0.064 3.936 8 H 0.092 0.908 9 C -0.183 4.183 10 C -0.171 4.171 11 C 0.111 3.889 12 H 0.062 0.938 13 C -0.568 4.568 14 H 0.095 0.905 15 C -0.121 4.121 16 N -0.532 5.532 17 Si 0.728 3.272 18 H -0.199 1.199 19 H -0.226 1.226 20 H -0.190 1.190 21 O -0.304 6.304 22 C 0.079 3.921 23 F -0.116 7.116 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.157 0.843 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.299 10.774 -6.879 18.446 hybrid contribution 0.036 0.510 0.180 0.542 sum -13.263 11.284 -6.699 18.658 Atomic orbital electron populations 1.20675 0.90427 1.03070 1.02469 1.19827 0.96696 0.91916 1.04300 1.20832 0.94150 0.96657 1.00488 1.21209 0.94103 0.98284 1.01198 1.21034 1.01276 0.90558 0.96444 1.20200 0.91457 0.97442 1.01272 1.21416 0.86635 0.91069 0.94460 0.90777 1.23225 0.99256 0.99673 0.96165 1.23038 0.94814 0.99673 0.99538 1.20883 0.88170 0.89179 0.90666 0.93787 1.21322 1.28387 0.93839 1.13217 0.90534 1.25050 0.93879 0.98404 0.94771 1.69939 1.31689 1.34894 1.16641 0.86427 0.76216 0.85449 0.79115 1.19926 1.22607 1.18976 1.88471 1.14053 1.65609 1.62234 1.17303 0.89122 0.80986 1.04693 1.91449 1.80148 1.46102 1.93907 0.91118 0.91321 0.91220 0.85510 0.85559 0.84326 0.91277 0.91001 0.91589 0.90760 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.83 36.01 0.35 -0.75 16 2 C -0.13 -1.67 5.89 -104.55 -0.62 -2.28 16 3 C -0.10 -1.23 9.70 -39.59 -0.38 -1.62 16 4 C -0.13 -1.70 10.04 -39.58 -0.40 -2.10 16 5 C -0.08 -1.23 9.38 -39.59 -0.37 -1.60 16 6 C -0.10 -1.80 5.11 -104.56 -0.53 -2.33 16 7 C 0.12 2.43 3.40 -26.86 -0.09 2.34 16 8 H 0.07 1.54 7.90 -51.93 -0.41 1.13 16 9 C -0.15 -2.53 6.56 -24.48 -0.16 -2.69 16 10 C -0.13 -2.62 6.53 -24.78 -0.16 -2.79 16 11 C 0.17 3.99 2.82 -27.16 -0.08 3.92 16 12 H 0.04 1.07 7.15 -51.93 -0.37 0.70 16 13 C -0.53 -15.18 9.33 -34.44 -0.32 -15.50 16 14 H 0.08 2.33 7.76 -52.48 -0.41 1.92 16 15 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 16 N -0.89 -27.71 13.96 55.43 0.77 -26.93 16 17 Si 0.90 23.11 26.30 -169.99 -4.47 18.64 16 18 H -0.27 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 20 H -0.27 -6.49 6.52 56.52 0.37 -6.13 16 21 O -0.38 -9.06 7.39 -35.23 -0.26 -9.33 16 22 C 0.10 1.56 7.19 -39.42 -0.28 1.27 16 23 F -0.14 -2.22 15.85 2.25 0.04 -2.18 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.71 7.65 -51.93 -0.40 0.31 16 26 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 28 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 29 H 0.14 2.42 7.29 -52.49 -0.38 2.04 16 30 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.51 7.65 -51.93 -0.40 1.11 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 285.87 15.07 4.31 4.31 Total: -1.00 -31.37 285.87 -7.24 -38.61 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -4.49 Total: -1.34 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -3.14 Total: -21.77 kcal Atomic # 7 Polarization: -27.71 SS G_CDS: 0.77 Total: -26.93 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.26 Total: -9.33 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.47 Total: 18.64 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.37 -7.24 -38.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394992307.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.305 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds