Wall clock time and date at job start Mon Mar 30 2020 06:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38218 * 120.01377 * 2 1 4 4 C 1.38223 * 120.02702 * 179.97438 * 3 2 1 5 5 C 1.38268 * 120.05187 * 0.02562 * 4 3 2 6 6 C 1.38180 * 120.02276 * 359.96226 * 5 4 3 7 7 C 1.50696 * 120.01205 * 180.02562 * 6 5 4 8 8 H 1.08999 * 110.27653 * 142.90971 * 7 6 5 9 9 C 1.54949 * 110.30926 * 264.99796 * 7 6 5 10 10 C 1.55306 * 100.93968 * 155.46038 * 9 7 6 11 11 C 1.54387 * 102.25523 * 325.86617 * 10 9 7 12 12 H 1.08998 * 109.82889 * 261.84867 * 11 10 9 13 13 C 1.50698 * 109.83178 * 140.86791 * 11 10 9 14 14 H 1.08005 * 119.99898 * 0.02562 * 13 11 10 15 15 C 1.37880 * 120.00024 * 179.97438 * 13 11 10 16 16 N 1.31509 * 119.99677 * 180.02562 * 15 13 11 17 17 Si 1.86799 * 119.99927 * 0.02562 * 15 13 11 18 18 H 1.48503 * 109.46958 * 89.99630 * 17 15 13 19 19 H 1.48498 * 109.47056 * 209.99659 * 17 15 13 20 20 H 1.48503 * 109.47023 * 329.99732 * 17 15 13 21 21 O 1.43243 * 107.58660 * 21.35629 * 11 10 9 22 22 C 1.38441 * 120.01026 * 180.22575 * 2 1 3 23 23 F 1.35093 * 120.02531 * 0.04214 * 22 2 1 24 24 H 1.08996 * 109.46985 * 90.00096 * 1 2 3 25 25 H 1.08999 * 109.47651 * 210.00571 * 1 2 3 26 26 H 1.08999 * 109.47114 * 330.00844 * 1 2 3 27 27 H 1.08004 * 119.98403 * 359.94928 * 3 2 1 28 28 H 1.08005 * 119.97731 * 179.97438 * 4 3 2 29 29 H 1.07990 * 119.99209 * 179.97438 * 5 4 3 30 30 H 1.08996 * 111.12558 * 37.54471 * 9 7 6 31 31 H 1.09003 * 111.15952 * 273.39218 * 9 7 6 32 32 H 1.09002 * 110.84953 * 207.68170 * 10 9 7 33 33 H 1.08998 * 110.84977 * 84.05947 * 10 9 7 34 34 H 0.96999 * 119.99713 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2733 0.0005 0.0005 6 6 3.5843 -1.1972 0.0008 7 6 4.3395 -2.5013 0.0014 8 1 3.8229 -3.2367 0.6181 9 6 4.4996 -3.0307 -1.4461 10 6 5.7642 -3.9197 -1.2965 11 6 6.5856 -3.1466 -0.2424 12 1 7.3427 -2.5382 -0.7370 13 6 7.2447 -4.1164 0.7042 14 1 7.0998 -5.1790 0.5761 15 6 8.0337 -3.6473 1.7330 16 7 8.6093 -4.4937 2.5587 17 14 8.2848 -1.8095 1.9541 18 1 7.2295 -1.2698 2.8487 19 1 9.6192 -1.5612 2.5566 20 1 8.2054 -1.1366 0.6327 21 8 5.6797 -2.3033 0.4789 22 6 2.1994 -1.1988 -0.0047 23 9 1.5247 -2.3692 -0.0102 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5137 27 1 1.6583 2.1322 -0.0008 28 1 4.1201 2.1328 0.0001 29 1 5.3532 0.0019 0.0005 30 1 4.6744 -2.2137 -2.1460 31 1 3.6357 -3.6238 -1.7459 32 1 6.3067 -3.9845 -2.2397 33 1 5.4998 -4.9120 -0.9308 34 1 9.1640 -4.1636 3.2827 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394992307.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:12 Heat of formation + Delta-G solvation = -92.391567 kcal Electronic energy + Delta-G solvation = -18380.474608 eV Core-core repulsion = 15384.579233 eV Total energy + Delta-G solvation = -2995.895375 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.92310 -40.79338 -39.43440 -34.98240 -33.96962 -32.95983 -32.28574 -29.99623 -27.83449 -26.60431 -23.83634 -22.85635 -22.13635 -21.40696 -19.02049 -18.57362 -17.92123 -17.22380 -16.81729 -16.66287 -16.25826 -15.66727 -15.04323 -14.79382 -14.58570 -14.32547 -14.22929 -14.09066 -13.98680 -13.41136 -13.03394 -12.88531 -12.70752 -12.51344 -12.48443 -12.20006 -11.83330 -11.76292 -11.54695 -11.44873 -10.87581 -10.22212 -9.62971 -9.56055 -8.37513 -6.50362 0.17059 0.23865 1.32741 1.41574 1.48886 2.35256 2.57169 2.81977 3.23878 3.35639 3.61332 3.74193 3.85538 4.01615 4.11217 4.23550 4.33049 4.39338 4.48344 4.57389 4.76582 4.78003 4.84877 4.88662 4.96606 5.06800 5.08290 5.23758 5.29638 5.40203 5.47771 5.52113 5.52925 5.96902 6.12077 6.41493 6.65906 7.26651 8.77170 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.029015 B = 0.007065 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.794665 B = 3962.357675 C = 4451.125905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.121 4.121 5 C -0.098 4.098 6 C -0.126 4.126 7 C 0.114 3.886 8 H 0.051 0.949 9 C -0.128 4.128 10 C -0.130 4.130 11 C 0.164 3.836 12 H 0.048 0.952 13 C -0.540 4.540 14 H 0.040 0.960 15 C 0.027 3.973 16 N -0.941 5.941 17 Si 0.961 3.039 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.245 1.245 21 O -0.400 6.400 22 C 0.077 3.923 23 F -0.146 7.146 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.096 0.904 27 H 0.170 0.830 28 H 0.157 0.843 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.388 14.083 -8.514 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.123 4.123 3 C -0.108 4.108 4 C -0.139 4.139 5 C -0.116 4.116 6 C -0.127 4.127 7 C 0.056 3.944 8 H 0.069 0.931 9 C -0.166 4.166 10 C -0.167 4.167 11 C 0.109 3.891 12 H 0.065 0.935 13 C -0.577 4.577 14 H 0.058 0.942 15 C -0.173 4.173 16 N -0.580 5.580 17 Si 0.787 3.213 18 H -0.206 1.206 19 H -0.217 1.217 20 H -0.169 1.169 21 O -0.321 6.321 22 C 0.058 3.942 23 F -0.125 7.125 24 H 0.104 0.896 25 H 0.079 0.921 26 H 0.114 0.886 27 H 0.187 0.813 28 H 0.175 0.825 29 H 0.139 0.861 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.249 14.137 -8.231 22.364 hybrid contribution 0.534 -0.562 0.600 0.980 sum -14.715 13.575 -7.631 21.426 Atomic orbital electron populations 1.20775 0.88079 1.04019 1.03726 1.20270 0.98447 0.91175 1.02424 1.21325 0.93764 0.97789 0.97968 1.21546 0.94908 0.98098 0.99314 1.21024 1.00671 0.91561 0.98320 1.20016 0.92177 0.96465 1.04034 1.21507 0.84799 0.92661 0.95389 0.93075 1.23159 0.98607 0.99744 0.95071 1.22970 0.95724 0.98786 0.99256 1.20757 0.89007 0.88877 0.90490 0.93485 1.21670 1.28671 0.93333 1.14058 0.94176 1.25916 0.93821 1.02938 0.94594 1.70062 1.33197 1.37011 1.17761 0.85455 0.76018 0.80090 0.79761 1.20633 1.21704 1.16877 1.88368 1.15816 1.65001 1.62936 1.17531 0.88707 0.81829 1.06133 1.91422 1.80139 1.46804 1.94139 0.89584 0.92130 0.88574 0.81281 0.82549 0.86073 0.89427 0.88988 0.89029 0.92216 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 9.83 71.24 0.70 -1.07 16 2 C -0.12 -2.80 5.89 -19.82 -0.12 -2.92 16 3 C -0.09 -1.73 9.70 22.26 0.22 -1.52 16 4 C -0.12 -2.72 10.04 22.27 0.22 -2.49 16 5 C -0.10 -3.04 9.38 22.26 0.21 -2.83 16 6 C -0.13 -4.32 5.11 -19.82 -0.10 -4.42 16 7 C 0.11 4.56 3.40 30.51 0.10 4.66 16 8 H 0.05 2.22 7.90 -2.39 -0.02 2.20 16 9 C -0.13 -4.33 6.56 32.05 0.21 -4.12 16 10 C -0.13 -5.09 6.53 31.86 0.21 -4.89 16 11 C 0.16 7.98 2.82 30.32 0.09 8.06 16 12 H 0.05 2.26 7.15 -2.39 -0.02 2.24 16 13 C -0.54 -32.08 9.33 25.60 0.24 -31.84 16 14 H 0.04 2.59 7.76 -2.91 -0.02 2.57 16 15 C 0.03 1.63 5.47 84.66 0.46 2.09 16 16 N -0.94 -60.43 13.96 21.45 0.30 -60.13 16 17 Si 0.96 48.44 26.30 68.60 1.80 50.24 16 18 H -0.28 -14.32 7.11 99.48 0.71 -13.61 16 19 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 20 H -0.25 -11.44 6.52 99.48 0.65 -10.79 16 21 O -0.40 -19.13 7.39 -148.98 -1.10 -20.23 16 22 C 0.08 2.34 7.19 22.38 0.16 2.50 16 23 F -0.15 -4.64 15.85 44.97 0.71 -3.93 16 24 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.06 1.09 7.65 -2.39 -0.02 1.08 16 26 H 0.10 1.06 8.09 -2.39 -0.02 1.05 16 27 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 28 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 29 H 0.12 4.13 7.29 -2.92 -0.02 4.11 16 30 H 0.09 2.65 8.05 -2.39 -0.02 2.63 16 31 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 33 H 0.06 2.49 7.65 -2.39 -0.02 2.47 16 34 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -71.05 285.87 5.35 -65.70 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.03 Total: 7.12 kcal Atomic # 6 Polarization: -41.38 SS G_CDS: 2.60 Total: -38.78 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.30 Total: -60.13 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -1.10 Total: -20.23 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.71 Total: -3.93 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 1.80 Total: 50.24 kcal Total: -71.05 5.35 -65.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394992307.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.688 kcal (2) G-P(sol) polarization free energy of solvation -71.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds