Wall clock time and date at job start Mon Mar 30 2020 06:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45196 * 109.47093 * 2 1 4 4 C 1.34714 * 116.99832 * 179.97438 * 3 2 1 5 5 O 1.21474 * 119.99939 * 359.97438 * 4 3 2 6 6 C 1.47738 * 119.99964 * 179.97438 * 4 3 2 7 7 C 1.39573 * 120.12405 * 5.79554 * 6 4 3 8 8 C 1.38447 * 119.78918 * 179.74341 * 7 6 4 9 9 O 1.35909 * 119.98178 * 180.25547 * 8 7 6 10 10 C 1.38864 * 120.03068 * 0.53385 * 8 7 6 11 11 C 1.38249 * 120.25225 * 359.71690 * 10 8 7 12 12 C 1.37993 * 120.21246 * 0.02565 * 11 10 8 13 13 C 1.50699 * 120.02110 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46939 * 100.35106 * 13 12 11 15 15 H 1.07997 * 120.00227 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99925 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99985 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47265 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47543 * 119.99805 * 18 16 14 21 21 H 1.48500 * 109.46912 * 239.99537 * 18 16 14 22 22 H 1.09001 * 109.47461 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47710 * 300.00678 * 1 2 3 24 24 H 1.09005 * 109.47079 * 60.00703 * 1 2 3 25 25 H 1.09009 * 109.46482 * 119.99727 * 2 1 3 26 26 H 1.08994 * 109.47263 * 239.99249 * 2 1 3 27 27 H 1.08005 * 120.10661 * 0.02562 * 7 6 4 28 28 H 0.96696 * 113.99742 * 270.27466 * 9 8 7 29 29 H 1.07999 * 119.87179 * 179.70132 * 10 8 7 30 30 H 1.07997 * 119.89139 * 179.97438 * 11 10 8 31 31 H 1.08996 * 109.46925 * 220.35155 * 13 12 11 32 32 H 1.08996 * 109.47045 * 340.35252 * 13 12 11 33 33 H 0.97002 * 120.00031 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3495 1.5454 0.0005 5 8 4.0894 0.5820 0.0015 6 6 3.9142 2.9106 0.0000 7 6 3.0721 4.0170 0.1208 8 6 3.6092 5.2931 0.1249 9 8 2.7932 6.3730 0.2476 10 6 4.9806 5.4702 -0.0022 11 6 5.8157 4.3756 -0.1272 12 6 5.2918 3.0989 -0.1271 13 6 6.2060 1.9088 -0.2643 14 6 6.4452 1.3001 1.0934 15 1 5.9820 1.7321 1.9681 16 6 7.2564 0.1923 1.2190 17 7 7.8209 -0.3335 0.1539 18 14 7.5524 -0.5626 2.9018 19 1 6.8083 0.2100 3.9288 20 1 7.0805 -1.9706 2.9027 21 1 9.0042 -0.5271 3.2118 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.8932 -0.5139 0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 2.0052 3.8781 0.2155 28 1 2.4713 6.7205 -0.5954 29 1 5.3964 6.4670 -0.0035 30 1 6.8814 4.5201 -0.2261 31 1 5.7438 1.1690 -0.9178 32 1 7.1564 2.2281 -0.6919 33 1 8.3913 -1.1131 0.2422 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396019128.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:21 Heat of formation + Delta-G solvation = -106.193610 kcal Electronic energy + Delta-G solvation = -18154.265819 eV Core-core repulsion = 15145.399153 eV Total energy + Delta-G solvation = -3008.866666 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.08189 -38.88492 -36.78017 -35.62745 -33.03868 -31.74729 -30.63115 -30.56504 -26.76731 -24.40610 -22.99483 -22.62868 -21.01281 -20.24228 -18.18360 -16.89034 -16.38449 -15.94206 -15.69568 -15.23086 -15.12399 -14.53103 -14.13332 -13.70782 -13.13683 -12.93950 -12.66129 -12.44759 -11.98931 -11.80881 -11.45839 -11.37633 -11.32404 -11.15525 -10.72869 -10.54489 -10.40082 -10.06140 -9.66677 -9.36980 -9.11568 -8.62718 -8.25627 -7.88856 -5.91719 -3.90125 1.24650 1.73472 3.15113 3.20956 3.36052 3.42763 3.47633 4.16994 4.44989 4.56728 5.09796 5.11822 5.21404 5.28341 5.41282 5.46912 5.54456 5.73920 5.81508 5.92101 5.95248 6.05715 6.15502 6.29102 6.64168 6.80197 6.85027 7.01365 7.17958 7.60184 7.84211 7.86444 8.01187 8.40272 8.57006 9.08420 9.69071 11.19983 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.014935 B = 0.009011 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.369989 B = 3106.608795 C = 4518.522458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.370 6.370 4 C 0.482 3.518 5 O -0.435 6.435 6 C -0.113 4.113 7 C -0.091 4.091 8 C 0.055 3.945 9 O -0.499 6.499 10 C -0.112 4.112 11 C -0.123 4.123 12 C 0.018 3.982 13 C 0.042 3.958 14 C -0.482 4.482 15 H 0.050 0.950 16 C 0.062 3.938 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.133 0.867 28 H 0.381 0.619 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.058 0.942 32 H 0.025 0.975 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.797 7.385 -2.871 14.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 O -0.289 6.289 4 C 0.324 3.676 5 O -0.318 6.318 6 C -0.114 4.114 7 C -0.110 4.110 8 C 0.011 3.989 9 O -0.307 6.307 10 C -0.130 4.130 11 C -0.141 4.141 12 C 0.018 3.982 13 C 0.005 3.995 14 C -0.521 4.521 15 H 0.069 0.931 16 C -0.138 4.138 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 H 0.093 0.907 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.151 0.849 28 H 0.235 0.765 29 H 0.143 0.857 30 H 0.151 0.849 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.360 6.815 -2.311 13.448 hybrid contribution 0.070 -0.527 0.500 0.730 sum -11.291 6.288 -1.811 13.050 Atomic orbital electron populations 1.21778 0.93290 1.02475 1.03086 1.22872 0.94569 0.81003 1.02640 1.86491 1.25149 1.31508 1.85779 1.21162 0.80090 0.90499 0.75817 1.91085 1.58476 1.41533 1.40746 1.18822 0.93509 0.89547 1.09554 1.21581 1.00204 0.91284 0.97948 1.18159 0.89066 0.85976 1.05662 1.84869 1.66244 1.45231 1.34405 1.21576 0.92930 0.99547 0.98978 1.20991 1.00161 0.91037 1.01933 1.20971 0.92517 0.97288 0.87460 1.18671 0.92366 0.89439 0.99000 1.20748 1.27725 1.12089 0.91499 0.93138 1.24857 0.96048 0.96566 0.96373 1.69952 1.32357 1.22911 1.28141 0.86557 0.77670 0.79247 0.84646 1.19912 1.21089 1.21108 0.90653 0.91756 0.91800 0.91374 0.91479 0.84885 0.76543 0.85694 0.84881 0.92454 0.95673 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.29 37.16 0.38 -1.21 16 2 C 0.06 0.94 6.19 37.16 0.23 1.17 16 3 O -0.37 -6.58 9.49 -40.53 -0.38 -6.97 16 4 C 0.48 10.29 7.82 34.61 0.27 10.56 16 5 O -0.44 -10.98 12.02 -19.25 -0.23 -11.21 16 6 C -0.11 -2.30 5.87 -105.00 -0.62 -2.92 16 7 C -0.09 -1.56 9.55 -39.01 -0.37 -1.93 16 8 C 0.06 0.86 6.70 -39.27 -0.26 0.60 16 9 O -0.50 -6.53 13.50 -19.45 -0.26 -6.80 16 10 C -0.11 -1.74 9.98 -39.35 -0.39 -2.14 16 11 C -0.12 -2.25 9.65 -39.67 -0.38 -2.63 16 12 C 0.02 0.39 5.11 -104.20 -0.53 -0.14 16 13 C 0.04 1.09 4.40 -29.04 -0.13 0.96 16 14 C -0.48 -13.89 7.54 -34.44 -0.26 -14.15 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 17 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 18 Si 0.89 22.55 29.54 -169.99 -5.02 17.53 16 19 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -7.19 7.11 56.52 0.40 -6.78 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 22 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.13 2.03 7.62 -52.48 -0.40 1.63 16 28 H 0.38 2.98 9.06 45.56 0.41 3.39 16 29 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.13 2.26 8.03 -52.49 -0.42 1.84 16 31 H 0.06 1.64 6.13 -51.93 -0.32 1.32 16 32 H 0.03 0.67 8.00 -51.93 -0.42 0.26 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 291.35 15.07 4.39 4.39 Total: -1.00 -33.68 291.35 -6.15 -39.83 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -3.22 Total: -0.22 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -2.16 Total: -10.08 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.88 Total: -24.97 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.68 -6.15 -39.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396019128.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.362 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds