Wall clock time and date at job start Mon Mar 30 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45196 * 109.47093 * 2 1 4 4 C 1.34714 * 116.99832 * 179.97438 * 3 2 1 5 5 O 1.21474 * 119.99939 * 359.97438 * 4 3 2 6 6 C 1.47738 * 119.99964 * 179.97438 * 4 3 2 7 7 C 1.39573 * 120.12405 * 5.79554 * 6 4 3 8 8 C 1.38447 * 119.78918 * 179.74341 * 7 6 4 9 9 O 1.35909 * 119.98178 * 180.25547 * 8 7 6 10 10 C 1.38864 * 120.03068 * 0.53385 * 8 7 6 11 11 C 1.38249 * 120.25225 * 359.71690 * 10 8 7 12 12 C 1.37993 * 120.21246 * 0.02565 * 11 10 8 13 13 C 1.50699 * 120.02110 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46939 * 100.35106 * 13 12 11 15 15 H 1.07997 * 120.00227 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99925 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99985 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47265 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47543 * 119.99805 * 18 16 14 21 21 H 1.48500 * 109.46912 * 239.99537 * 18 16 14 22 22 H 1.09001 * 109.47461 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47710 * 300.00678 * 1 2 3 24 24 H 1.09005 * 109.47079 * 60.00703 * 1 2 3 25 25 H 1.09009 * 109.46482 * 119.99727 * 2 1 3 26 26 H 1.08994 * 109.47263 * 239.99249 * 2 1 3 27 27 H 1.08005 * 120.10661 * 0.02562 * 7 6 4 28 28 H 0.96696 * 113.99742 * 270.27466 * 9 8 7 29 29 H 1.07999 * 119.87179 * 179.70132 * 10 8 7 30 30 H 1.07997 * 119.89139 * 179.97438 * 11 10 8 31 31 H 1.08996 * 109.46925 * 220.35155 * 13 12 11 32 32 H 1.08996 * 109.47045 * 340.35252 * 13 12 11 33 33 H 0.97002 * 120.00031 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3495 1.5454 0.0005 5 8 4.0894 0.5820 0.0015 6 6 3.9142 2.9106 0.0000 7 6 3.0721 4.0170 0.1208 8 6 3.6092 5.2931 0.1249 9 8 2.7932 6.3730 0.2476 10 6 4.9806 5.4702 -0.0022 11 6 5.8157 4.3756 -0.1272 12 6 5.2918 3.0989 -0.1271 13 6 6.2060 1.9088 -0.2643 14 6 6.4452 1.3001 1.0934 15 1 5.9820 1.7321 1.9681 16 6 7.2564 0.1923 1.2190 17 7 7.8209 -0.3335 0.1539 18 14 7.5524 -0.5626 2.9018 19 1 6.8083 0.2100 3.9288 20 1 7.0805 -1.9706 2.9027 21 1 9.0042 -0.5271 3.2118 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.8932 -0.5139 0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 2.0052 3.8781 0.2155 28 1 2.4713 6.7205 -0.5954 29 1 5.3964 6.4670 -0.0035 30 1 6.8814 4.5201 -0.2261 31 1 5.7438 1.1690 -0.9178 32 1 7.1564 2.2281 -0.6919 33 1 8.3913 -1.1131 0.2422 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396019128.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:20 Heat of formation + Delta-G solvation = -129.166230 kcal Electronic energy + Delta-G solvation = -18155.261987 eV Core-core repulsion = 15145.399153 eV Total energy + Delta-G solvation = -3009.862834 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.61864 -40.24924 -38.12706 -37.14458 -35.10981 -33.01874 -32.33165 -31.87437 -28.58813 -25.95497 -24.77703 -23.85566 -22.54137 -21.70531 -19.47978 -18.54106 -18.35136 -17.43931 -17.11361 -16.83600 -16.52644 -16.13341 -15.65143 -15.08968 -14.57836 -14.39191 -14.31433 -13.78705 -13.45008 -13.37787 -13.04854 -12.96616 -12.78662 -12.60549 -12.51010 -12.42975 -11.77722 -11.54076 -11.46380 -11.42346 -10.90445 -10.45889 -10.01860 -9.39649 -8.13895 -6.19424 -0.20710 0.35333 1.33777 1.35335 1.46981 1.66248 1.73601 2.40386 2.77830 3.20205 3.25989 3.80615 3.97697 4.01926 4.12456 4.19700 4.25520 4.37754 4.47811 4.76222 4.86224 4.94172 4.98123 5.13649 5.21474 5.28695 5.36759 5.40277 5.52081 5.78818 5.81362 5.90610 6.23631 6.84626 6.92740 6.99135 7.43154 8.97920 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.014935 B = 0.009011 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.369989 B = 3106.608795 C = 4518.522458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.052 3.948 3 O -0.360 6.360 4 C 0.483 3.517 5 O -0.489 6.489 6 C -0.132 4.132 7 C -0.087 4.087 8 C 0.080 3.920 9 O -0.497 6.497 10 C -0.095 4.095 11 C -0.126 4.126 12 C -0.018 4.018 13 C 0.054 3.946 14 C -0.488 4.488 15 H 0.040 0.960 16 C 0.006 3.994 17 N -0.931 5.931 18 Si 0.953 3.047 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.271 1.271 22 H 0.100 0.900 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.153 0.847 28 H 0.410 0.590 29 H 0.165 0.835 30 H 0.139 0.861 31 H 0.022 0.978 32 H 0.005 0.995 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.678 9.684 -2.005 16.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.021 4.021 3 O -0.278 6.278 4 C 0.328 3.672 5 O -0.376 6.376 6 C -0.133 4.133 7 C -0.105 4.105 8 C 0.036 3.964 9 O -0.310 6.310 10 C -0.113 4.113 11 C -0.144 4.144 12 C -0.019 4.019 13 C 0.017 3.983 14 C -0.526 4.526 15 H 0.059 0.941 16 C -0.191 4.191 17 N -0.572 5.572 18 Si 0.779 3.221 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.196 1.196 22 H 0.118 0.882 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.171 0.829 28 H 0.269 0.731 29 H 0.182 0.818 30 H 0.157 0.843 31 H 0.040 0.960 32 H 0.023 0.977 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.283 9.153 -1.461 16.197 hybrid contribution 0.498 -1.095 0.179 1.217 sum -12.785 8.057 -1.282 15.167 Atomic orbital electron populations 1.21787 0.89307 1.04420 1.03929 1.23236 0.97563 0.79527 1.01814 1.86487 1.23134 1.33253 1.84951 1.21552 0.80809 0.90620 0.74255 1.91061 1.59849 1.43160 1.43542 1.18872 0.93407 0.90081 1.10972 1.21726 1.00700 0.90886 0.97222 1.18150 0.89411 0.86144 1.02731 1.84809 1.65621 1.43823 1.36699 1.21878 0.92643 1.00216 0.96603 1.21063 1.01059 0.90457 1.01827 1.20653 0.92716 0.97000 0.91498 1.18286 0.92144 0.90720 0.97147 1.20982 1.27094 1.12164 0.92387 0.94139 1.25708 0.96045 0.97192 1.00140 1.70073 1.33307 1.23533 1.30264 0.85577 0.78184 0.78157 0.80210 1.19369 1.20932 1.19628 0.88152 0.91051 0.90728 0.92612 0.92145 0.82919 0.73076 0.81767 0.84277 0.95965 0.97723 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 10.29 71.98 0.74 -1.91 16 2 C 0.05 1.57 6.19 71.98 0.45 2.01 16 3 O -0.36 -12.82 9.49 -56.24 -0.53 -13.36 16 4 C 0.48 21.35 7.82 70.33 0.55 21.90 16 5 O -0.49 -26.23 12.02 19.92 0.24 -25.99 16 6 C -0.13 -5.41 5.87 -20.11 -0.12 -5.53 16 7 C -0.09 -2.74 9.55 22.64 0.22 -2.53 16 8 C 0.08 2.18 6.70 22.47 0.15 2.33 16 9 O -0.50 -10.30 13.50 -92.52 -1.25 -11.55 16 10 C -0.10 -2.62 9.98 22.42 0.22 -2.39 16 11 C -0.13 -4.49 9.65 22.21 0.21 -4.28 16 12 C -0.02 -0.81 5.11 -19.59 -0.10 -0.91 16 13 C 0.05 2.99 4.40 29.10 0.13 3.11 16 14 C -0.49 -29.34 7.54 25.60 0.19 -29.15 16 15 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 16 C 0.01 0.37 5.46 84.66 0.46 0.83 16 17 N -0.93 -59.07 13.29 21.45 0.28 -58.78 16 18 Si 0.95 47.41 29.54 68.60 2.03 49.44 16 19 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.28 -13.91 7.11 99.48 0.71 -13.21 16 21 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 22 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 25 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.15 4.17 7.62 -2.91 -0.02 4.14 16 28 H 0.41 3.99 9.06 -74.06 -0.67 3.32 16 29 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 30 H 0.14 4.67 8.03 -2.91 -0.02 4.64 16 31 H 0.02 1.38 6.13 -2.39 -0.01 1.37 16 32 H 0.00 0.26 8.00 -2.39 -0.02 0.24 16 33 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -76.89 291.35 4.33 -72.56 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 0.46 Total: 4.18 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 3.11 Total: -16.50 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.28 Total: -58.78 kcal Atomic # 8 Polarization: -49.35 SS G_CDS: -1.54 Total: -50.90 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -76.89 4.33 -72.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396019128.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.605 kcal (2) G-P(sol) polarization free energy of solvation -76.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds