Wall clock time and date at job start Mon Mar 30 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45203 * 109.47244 * 2 1 4 4 C 1.34713 * 117.00139 * 179.97438 * 3 2 1 5 5 O 1.21469 * 119.99722 * 0.02562 * 4 3 2 6 6 C 1.47746 * 119.99657 * 180.02562 * 4 3 2 7 7 C 1.39642 * 120.12534 * 359.97438 * 6 4 3 8 8 C 1.37952 * 119.96035 * 179.72763 * 7 6 4 9 9 C 1.38297 * 120.21250 * 0.56328 * 8 7 6 10 10 C 1.50699 * 119.87732 * 179.72682 * 9 8 7 11 11 C 1.50706 * 109.46817 * 264.73024 * 10 9 8 12 12 H 1.07995 * 120.00167 * 359.72198 * 11 10 9 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47487 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47233 * 120.00158 * 15 13 11 18 18 H 1.48508 * 109.46883 * 239.99963 * 15 13 11 19 19 C 1.38823 * 120.24601 * 359.45459 * 9 8 7 20 20 O 1.35902 * 119.98156 * 180.27062 * 19 9 8 21 21 C 1.38484 * 120.03366 * 0.25117 * 19 9 8 22 22 H 1.09003 * 109.46810 * 299.99780 * 1 2 3 23 23 H 1.08995 * 109.47156 * 59.99636 * 1 2 3 24 24 H 1.09000 * 109.46760 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47538 * 240.00344 * 2 1 3 26 26 H 1.09000 * 109.47750 * 119.99994 * 2 1 3 27 27 H 1.08001 * 120.02211 * 0.02562 * 7 6 4 28 28 H 1.08004 * 119.89855 * 180.31839 * 8 7 6 29 29 H 1.09000 * 109.47247 * 144.73087 * 10 9 8 30 30 H 1.09001 * 109.47358 * 24.72513 * 10 9 8 31 31 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 32 32 H 0.96698 * 114.00011 * 90.00125 * 20 19 9 33 33 H 1.08001 * 120.10341 * 180.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5455 0.0005 5 8 4.0894 0.5821 0.0005 6 6 3.9141 2.9108 0.0011 7 6 3.0659 4.0200 0.0006 8 6 3.5967 5.2933 0.0069 9 6 4.9676 5.4758 0.0019 10 6 5.5393 6.8701 0.0026 11 6 5.8451 7.2882 -1.4127 12 1 5.6496 6.6103 -2.2303 13 6 6.3793 8.5344 -1.6630 14 7 6.6225 9.3579 -0.6669 15 14 6.7577 9.0530 -3.4173 16 1 6.3959 7.9535 -4.3475 17 1 5.9716 10.2667 -3.7552 18 1 8.2071 9.3509 -3.5437 19 6 5.8190 4.3793 0.0020 20 8 7.1653 4.5648 0.0027 21 6 5.2971 3.0965 0.0019 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.9948 3.8812 0.0002 28 1 2.9397 6.1505 0.0117 29 1 6.4558 6.8868 0.5924 30 1 4.8152 7.5596 0.4367 31 1 6.9987 10.2345 -0.8431 32 1 7.5545 4.6183 0.8863 33 1 5.9584 2.2427 0.0024 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396019501.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:40 Heat of formation + Delta-G solvation = -118.325751 kcal Electronic energy + Delta-G solvation = -17474.072450 eV Core-core repulsion = 14464.679695 eV Total energy + Delta-G solvation = -3009.392755 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.44300 -39.10477 -36.58515 -36.00249 -33.55628 -31.99449 -31.32268 -29.54172 -27.61619 -24.56692 -23.17665 -22.13348 -21.72543 -20.32259 -18.40883 -17.05513 -16.56724 -16.46651 -16.16268 -15.22266 -15.03298 -14.43776 -14.20265 -14.12455 -13.43941 -13.16266 -12.93087 -12.45283 -12.17463 -11.92193 -11.84061 -11.55184 -11.48155 -11.12359 -10.77338 -10.64811 -10.61652 -10.44714 -10.15673 -9.60274 -9.48026 -8.45856 -8.45419 -8.03730 -6.08215 -4.10795 1.06452 1.68690 2.65819 2.79237 3.29231 3.36840 3.42849 4.08723 4.44182 4.65666 4.75278 4.78963 4.87882 5.08580 5.23952 5.29729 5.41348 5.48519 5.57632 5.68826 5.76173 5.87572 6.18350 6.29985 6.43148 6.52847 6.79663 6.84478 7.16287 7.43215 7.60676 7.85324 7.87256 8.19012 8.27473 8.92342 9.52578 11.02161 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.035513 B = 0.004584 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.254980 B = 6106.699388 C = 6364.978033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.355 6.355 4 C 0.517 3.483 5 O -0.518 6.518 6 C -0.149 4.149 7 C -0.069 4.069 8 C -0.128 4.128 9 C -0.019 4.019 10 C 0.049 3.951 11 C -0.503 4.503 12 H 0.057 0.943 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.088 3.912 20 O -0.479 6.479 21 C -0.082 4.082 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.035 0.965 30 H 0.032 0.968 31 H 0.262 0.738 32 H 0.381 0.619 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.414 -13.712 3.836 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.272 6.272 4 C 0.363 3.637 5 O -0.408 6.408 6 C -0.150 4.150 7 C -0.087 4.087 8 C -0.146 4.146 9 C -0.020 4.020 10 C 0.012 3.988 11 C -0.542 4.542 12 H 0.076 0.924 13 C -0.142 4.142 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.209 1.209 19 C 0.043 3.957 20 O -0.287 6.287 21 C -0.101 4.101 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.149 0.851 28 H 0.151 0.849 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.236 0.764 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.222 -13.865 3.256 16.967 hybrid contribution 0.394 0.167 -0.481 0.644 sum -8.829 -13.698 2.775 16.531 Atomic orbital electron populations 1.21802 0.92662 1.02820 1.03637 1.22995 0.95271 0.80392 1.02525 1.86558 1.24174 1.31981 1.84469 1.21272 0.80210 0.90037 0.72138 1.90792 1.60403 1.42679 1.46902 1.18637 0.93388 0.89425 1.13543 1.21356 0.99562 0.91698 0.96118 1.21043 0.94852 0.96655 1.02024 1.21455 0.93089 0.98687 0.88749 1.18370 0.96630 0.85328 0.98431 1.20962 1.42007 0.99810 0.91387 0.92429 1.24969 0.95424 0.96463 0.97367 1.69952 1.44330 1.08356 1.30783 0.86442 0.78047 0.78471 0.84553 1.19657 1.20948 1.20886 1.18127 0.83986 0.90626 1.02918 1.84938 1.16600 1.94722 1.32463 1.21400 0.93550 0.97430 0.97723 0.91422 0.91394 0.90358 0.91304 0.91325 0.85080 0.84916 0.94647 0.94967 0.92858 0.76397 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 37.16 0.38 -0.74 16 2 C 0.06 0.65 6.19 37.16 0.23 0.88 16 3 O -0.35 -4.84 9.47 -40.53 -0.38 -5.22 16 4 C 0.52 8.31 7.90 34.62 0.27 8.58 16 5 O -0.52 -9.26 16.13 -19.24 -0.31 -9.57 16 6 C -0.15 -2.49 5.87 -105.00 -0.62 -3.11 16 7 C -0.07 -1.09 9.61 -39.16 -0.38 -1.47 16 8 C -0.13 -2.28 9.65 -39.66 -0.38 -2.66 16 9 C -0.02 -0.40 5.09 -104.38 -0.53 -0.93 16 10 C 0.05 1.21 4.82 -29.03 -0.14 1.07 16 11 C -0.50 -13.95 9.09 -34.44 -0.31 -14.26 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 14 N -0.90 -25.95 13.29 55.43 0.74 -25.21 16 15 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 C 0.09 1.71 6.67 -39.27 -0.26 1.45 16 20 O -0.48 -9.13 12.62 -19.43 -0.25 -9.38 16 21 C -0.08 -1.45 9.53 -39.01 -0.37 -1.82 16 22 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.13 1.73 7.61 -52.49 -0.40 1.33 16 28 H 0.13 2.20 8.06 -52.48 -0.42 1.78 16 29 H 0.04 0.91 7.68 -51.93 -0.40 0.51 16 30 H 0.03 0.82 8.05 -51.93 -0.42 0.40 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.38 5.31 9.06 45.56 0.41 5.72 16 33 H 0.13 2.24 7.65 -52.49 -0.40 1.84 16 LS Contribution 297.40 15.07 4.48 4.48 Total: -1.00 -32.01 297.40 -6.23 -38.23 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -3.28 Total: 1.55 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -2.20 Total: -11.46 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.74 Total: -25.21 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.94 Total: -24.17 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.01 -6.23 -38.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396019501.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.092 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds