Wall clock time and date at job start Mon Mar 30 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45203 * 109.47244 * 2 1 4 4 C 1.34713 * 117.00139 * 179.97438 * 3 2 1 5 5 O 1.21469 * 119.99722 * 0.02562 * 4 3 2 6 6 C 1.47746 * 119.99657 * 180.02562 * 4 3 2 7 7 C 1.39642 * 120.12534 * 359.97438 * 6 4 3 8 8 C 1.37952 * 119.96035 * 179.72763 * 7 6 4 9 9 C 1.38297 * 120.21250 * 0.56328 * 8 7 6 10 10 C 1.50699 * 119.87732 * 179.72682 * 9 8 7 11 11 C 1.50706 * 109.46817 * 264.73024 * 10 9 8 12 12 H 1.07995 * 120.00167 * 359.72198 * 11 10 9 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47487 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47233 * 120.00158 * 15 13 11 18 18 H 1.48508 * 109.46883 * 239.99963 * 15 13 11 19 19 C 1.38823 * 120.24601 * 359.45459 * 9 8 7 20 20 O 1.35902 * 119.98156 * 180.27062 * 19 9 8 21 21 C 1.38484 * 120.03366 * 0.25117 * 19 9 8 22 22 H 1.09003 * 109.46810 * 299.99780 * 1 2 3 23 23 H 1.08995 * 109.47156 * 59.99636 * 1 2 3 24 24 H 1.09000 * 109.46760 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47538 * 240.00344 * 2 1 3 26 26 H 1.09000 * 109.47750 * 119.99994 * 2 1 3 27 27 H 1.08001 * 120.02211 * 0.02562 * 7 6 4 28 28 H 1.08004 * 119.89855 * 180.31839 * 8 7 6 29 29 H 1.09000 * 109.47247 * 144.73087 * 10 9 8 30 30 H 1.09001 * 109.47358 * 24.72513 * 10 9 8 31 31 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 32 32 H 0.96698 * 114.00011 * 90.00125 * 20 19 9 33 33 H 1.08001 * 120.10341 * 180.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5455 0.0005 5 8 4.0894 0.5821 0.0005 6 6 3.9141 2.9108 0.0011 7 6 3.0659 4.0200 0.0006 8 6 3.5967 5.2933 0.0069 9 6 4.9676 5.4758 0.0019 10 6 5.5393 6.8701 0.0026 11 6 5.8451 7.2882 -1.4127 12 1 5.6496 6.6103 -2.2303 13 6 6.3793 8.5344 -1.6630 14 7 6.6225 9.3579 -0.6669 15 14 6.7577 9.0530 -3.4173 16 1 6.3959 7.9535 -4.3475 17 1 5.9716 10.2667 -3.7552 18 1 8.2071 9.3509 -3.5437 19 6 5.8190 4.3793 0.0020 20 8 7.1653 4.5648 0.0027 21 6 5.2971 3.0965 0.0019 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.9948 3.8812 0.0002 28 1 2.9397 6.1505 0.0117 29 1 6.4558 6.8868 0.5924 30 1 4.8152 7.5596 0.4367 31 1 6.9987 10.2345 -0.8431 32 1 7.5545 4.6183 0.8863 33 1 5.9584 2.2427 0.0024 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396019501.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:39 Heat of formation + Delta-G solvation = -138.463358 kcal Electronic energy + Delta-G solvation = -17474.945683 eV Core-core repulsion = 14464.679695 eV Total energy + Delta-G solvation = -3010.265988 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.69211 -40.50161 -37.78178 -37.41430 -35.49705 -33.36708 -32.48623 -30.97223 -29.34237 -26.18606 -24.38733 -23.46959 -23.10540 -21.72947 -19.73532 -18.54190 -18.30212 -17.62157 -17.53863 -16.81581 -16.63060 -16.00486 -15.62380 -15.14691 -14.73959 -14.49642 -14.32896 -13.69938 -13.60617 -13.36200 -13.16792 -12.89490 -12.75835 -12.60547 -12.49321 -12.41206 -11.90920 -11.81524 -11.56711 -11.52183 -11.17206 -10.59239 -9.88566 -9.55655 -8.20645 -6.30748 -0.32650 0.29876 1.39040 1.40139 1.45787 1.53857 1.56268 2.40370 2.72266 3.12086 3.35889 3.61616 3.89767 4.03299 4.08953 4.15372 4.16524 4.36409 4.44199 4.69448 4.89307 4.91797 4.95715 5.11567 5.16166 5.21480 5.32167 5.33486 5.42713 5.73417 5.77188 5.82301 6.16139 6.64022 6.78950 6.91604 7.36485 8.89379 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.035513 B = 0.004584 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.254980 B = 6106.699388 C = 6364.978033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.352 6.352 4 C 0.523 3.477 5 O -0.538 6.538 6 C -0.145 4.145 7 C -0.052 4.052 8 C -0.126 4.126 9 C -0.050 4.050 10 C 0.059 3.941 11 C -0.520 4.520 12 H 0.047 0.953 13 C 0.009 3.991 14 N -0.927 5.927 15 Si 0.960 3.040 16 H -0.270 1.270 17 H -0.273 1.273 18 H -0.278 1.278 19 C 0.082 3.918 20 O -0.498 6.498 21 C -0.083 4.083 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.102 0.898 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.165 0.835 28 H 0.143 0.857 29 H 0.014 0.986 30 H 0.016 0.984 31 H 0.265 0.735 32 H 0.400 0.600 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.031 -14.985 3.224 18.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.268 6.268 4 C 0.370 3.630 5 O -0.430 6.430 6 C -0.147 4.147 7 C -0.070 4.070 8 C -0.144 4.144 9 C -0.051 4.051 10 C 0.022 3.978 11 C -0.558 4.558 12 H 0.065 0.935 13 C -0.189 4.189 14 N -0.567 5.567 15 Si 0.785 3.215 16 H -0.195 1.195 17 H -0.198 1.198 18 H -0.204 1.204 19 C 0.038 3.962 20 O -0.310 6.310 21 C -0.102 4.102 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.121 0.879 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.183 0.817 28 H 0.161 0.839 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.258 0.742 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.857 -15.144 2.660 18.823 hybrid contribution 0.829 0.444 -0.239 0.971 sum -10.028 -14.699 2.421 17.958 Atomic orbital electron populations 1.21833 0.90060 1.04504 1.03856 1.23381 0.97252 0.78708 1.02783 1.86547 1.22413 1.34144 1.83716 1.21070 0.81012 0.89259 0.71702 1.90787 1.61162 1.43175 1.47886 1.18853 0.93214 0.90451 1.12152 1.21585 1.01055 0.90219 0.94155 1.21161 0.93736 0.98109 1.01377 1.21215 0.94653 0.96879 0.92305 1.18064 0.95419 0.87705 0.96570 1.21249 1.41986 0.99900 0.92641 0.93487 1.25783 0.95263 0.96544 1.01334 1.70049 1.45077 1.08790 1.32759 0.85468 0.78006 0.78239 0.79764 1.19490 1.19834 1.20405 1.18182 0.83867 0.90983 1.03183 1.84862 1.16858 1.94806 1.34434 1.21422 0.94337 0.96731 0.97693 0.91063 0.91280 0.87946 0.91265 0.90976 0.81712 0.83894 0.96760 0.96589 0.92566 0.74244 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.29 71.98 0.74 -0.93 16 2 C 0.05 0.95 6.19 71.98 0.45 1.39 16 3 O -0.35 -8.62 9.47 -56.23 -0.53 -9.15 16 4 C 0.52 15.68 7.90 70.34 0.56 16.24 16 5 O -0.54 -18.37 16.13 19.94 0.32 -18.05 16 6 C -0.15 -4.60 5.87 -20.11 -0.12 -4.72 16 7 C -0.05 -1.53 9.61 22.54 0.22 -1.31 16 8 C -0.13 -4.37 9.65 22.22 0.21 -4.16 16 9 C -0.05 -2.09 5.09 -19.71 -0.10 -2.19 16 10 C 0.06 3.02 4.82 29.10 0.14 3.16 16 11 C -0.52 -29.36 9.09 25.60 0.23 -29.13 16 12 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 13 C 0.01 0.51 5.46 84.66 0.46 0.97 16 14 N -0.93 -54.57 13.29 21.45 0.28 -54.29 16 15 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 16 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 C 0.08 3.21 6.67 22.47 0.15 3.36 16 20 O -0.50 -19.35 12.62 -92.44 -1.17 -20.51 16 21 C -0.08 -2.86 9.53 22.64 0.22 -2.65 16 22 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.17 3.70 7.61 -2.91 -0.02 3.68 16 28 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 29 H 0.01 0.76 7.68 -2.39 -0.02 0.75 16 30 H 0.02 0.84 8.05 -2.39 -0.02 0.82 16 31 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 32 H 0.40 11.46 9.06 -74.06 -0.67 10.79 16 33 H 0.14 4.60 7.65 -2.91 -0.02 4.58 16 Total: -1.00 -68.45 297.40 4.54 -63.91 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.45 Total: 11.57 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: 3.16 Total: -19.96 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.28 Total: -54.29 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -1.38 Total: -47.71 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -68.45 4.54 -63.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396019501.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.558 kcal (2) G-P(sol) polarization free energy of solvation -68.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds