Wall clock time and date at job start Mon Mar 30 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47141 * 2 1 4 4 C 1.34750 * 116.99969 * 179.97438 * 3 2 1 5 5 O 1.21507 * 120.00038 * 359.72922 * 4 3 2 6 6 C 1.47406 * 119.99927 * 180.02562 * 4 3 2 7 7 C 1.39773 * 120.19557 * 359.45116 * 6 4 3 8 8 C 1.37761 * 119.90022 * 179.72032 * 7 6 4 9 9 C 1.38567 * 120.30705 * 0.55677 * 8 7 6 10 10 C 1.38047 * 120.40325 * 359.72005 * 9 8 7 11 11 C 1.50702 * 119.95613 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47371 * 264.97832 * 11 10 9 13 13 H 1.07999 * 119.99656 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00389 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99708 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00190 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47294 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47162 * 120.00228 * 16 14 12 19 19 H 1.48505 * 109.46940 * 240.00166 * 16 14 12 20 20 C 1.38704 * 120.09218 * 0.02562 * 10 9 8 21 21 O 1.35638 * 120.15959 * 180.02562 * 20 10 9 22 22 H 1.09001 * 109.46982 * 59.99892 * 1 2 3 23 23 H 1.08994 * 109.46935 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47443 * 300.00074 * 1 2 3 25 25 H 1.08996 * 109.47016 * 240.00103 * 2 1 3 26 26 H 1.08997 * 109.47247 * 119.99661 * 2 1 3 27 27 H 1.08003 * 120.04692 * 359.97438 * 7 6 4 28 28 H 1.08003 * 119.84829 * 180.27960 * 8 7 6 29 29 H 1.08007 * 119.79821 * 179.69941 * 9 8 7 30 30 H 1.08998 * 109.46875 * 24.98053 * 11 10 9 31 31 H 1.09003 * 109.47430 * 144.97841 * 11 10 9 32 32 H 0.97004 * 119.99918 * 180.02562 * 15 14 12 33 33 H 0.96697 * 114.00401 * 269.98035 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5455 0.0005 5 8 4.0900 0.5819 0.0060 6 6 3.9133 2.9076 0.0011 7 6 3.0657 4.0190 -0.0104 8 6 3.5987 5.2893 -0.0039 9 6 4.9724 5.4712 0.0023 10 6 5.8212 4.3825 0.0080 11 6 7.3136 4.5920 0.0154 12 6 7.8357 4.5370 -1.3972 13 1 7.1548 4.3677 -2.2182 14 6 9.1823 4.7038 -1.6415 15 7 10.0113 4.9104 -0.6417 16 14 9.8292 4.6362 -3.3926 17 1 8.7017 4.3929 -4.3279 18 1 10.4825 5.9266 -3.7291 19 1 10.8179 3.5347 -3.5129 20 6 5.3025 3.0962 0.0069 21 8 6.1353 2.0256 0.0130 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.9944 3.8820 -0.0202 28 1 2.9429 6.1474 -0.0083 29 1 5.3814 6.4708 0.0025 30 1 7.5417 5.5655 0.4494 31 1 7.7874 3.8098 0.6086 32 1 10.9587 5.0281 -0.8136 33 1 6.3815 1.7137 -0.8685 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396021259.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:43 Heat of formation + Delta-G solvation = -136.414713 kcal Electronic energy + Delta-G solvation = -17825.645711 eV Core-core repulsion = 14815.468560 eV Total energy + Delta-G solvation = -3010.177152 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.72738 -40.30442 -37.76728 -37.28175 -35.49904 -33.43056 -32.46318 -31.12057 -28.90872 -25.74567 -25.32821 -23.60738 -22.51940 -21.71808 -19.23817 -18.65536 -18.42240 -17.76834 -17.55454 -16.65727 -16.51274 -16.39987 -15.36319 -15.03966 -14.78653 -14.44147 -14.19838 -13.62862 -13.43166 -13.27200 -13.06923 -12.97166 -12.84586 -12.60752 -12.50436 -12.36777 -12.08046 -11.61345 -11.55567 -11.51508 -11.03459 -10.61312 -9.88208 -9.44944 -8.20441 -6.33901 -0.31669 0.40172 1.39703 1.40846 1.52524 1.54941 1.60440 2.39074 2.74237 3.11572 3.36507 3.68164 3.97116 4.01905 4.10399 4.16700 4.35397 4.40664 4.47579 4.68688 4.88621 4.95014 5.01664 5.13317 5.19402 5.26720 5.36419 5.39456 5.49134 5.73429 5.83215 5.87253 6.14908 6.72200 6.78867 6.81346 7.35059 8.89649 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.031145 B = 0.005354 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.813499 B = 5228.390231 C = 5641.092321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 O -0.352 6.352 4 C 0.512 3.488 5 O -0.527 6.527 6 C -0.178 4.178 7 C -0.056 4.056 8 C -0.127 4.127 9 C -0.076 4.076 10 C -0.108 4.108 11 C 0.063 3.937 12 C -0.525 4.525 13 H 0.057 0.943 14 C 0.007 3.993 15 N -0.929 5.929 16 Si 0.965 3.035 17 H -0.263 1.263 18 H -0.276 1.276 19 H -0.281 1.281 20 C 0.150 3.850 21 O -0.493 6.493 22 H 0.072 0.928 23 H 0.101 0.899 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.168 0.832 28 H 0.174 0.826 29 H 0.138 0.862 30 H 0.010 0.990 31 H 0.001 0.999 32 H 0.265 0.735 33 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.768 -3.532 -0.564 20.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.269 6.269 4 C 0.359 3.641 5 O -0.417 6.417 6 C -0.180 4.180 7 C -0.074 4.074 8 C -0.144 4.144 9 C -0.094 4.094 10 C -0.109 4.109 11 C 0.026 3.974 12 C -0.563 4.563 13 H 0.075 0.925 14 C -0.192 4.192 15 N -0.569 5.569 16 Si 0.790 3.210 17 H -0.187 1.187 18 H -0.201 1.201 19 H -0.206 1.206 20 C 0.104 3.896 21 O -0.305 6.305 22 H 0.091 0.909 23 H 0.119 0.881 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.186 0.814 28 H 0.191 0.809 29 H 0.156 0.844 30 H 0.029 0.971 31 H 0.019 0.981 32 H 0.074 0.926 33 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -19.454 -3.789 0.082 19.819 hybrid contribution 1.330 -0.428 -1.055 1.751 sum -18.123 -4.217 -0.973 18.633 Atomic orbital electron populations 1.21815 0.89669 1.04492 1.03957 1.23337 0.97438 0.78985 1.02401 1.86532 1.22374 1.33839 1.84146 1.21095 0.81022 0.89530 0.72483 1.90835 1.61013 1.43170 1.46730 1.19622 0.92676 0.91663 1.14021 1.21565 1.00611 0.90456 0.94794 1.21483 0.94208 0.98159 1.00577 1.21512 0.93909 0.98540 0.95427 1.20778 0.98210 0.92552 0.99318 1.17952 0.86884 0.95846 0.96699 1.21331 0.92936 1.49527 0.92527 0.92469 1.25902 0.97219 0.94574 1.01482 1.70097 1.03927 1.49816 1.33081 0.85391 0.78381 0.77850 0.79374 1.18701 1.20138 1.20648 1.18560 0.87306 0.86877 0.96839 1.84593 1.65995 1.45811 1.34103 0.90941 0.88077 0.91018 0.91504 0.91709 0.81444 0.80908 0.84425 0.97133 0.98095 0.92627 0.74340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 10.29 71.98 0.74 -1.05 16 2 C 0.05 1.08 6.20 71.98 0.45 1.53 16 3 O -0.35 -9.45 9.47 -56.61 -0.54 -9.98 16 4 C 0.51 17.61 7.89 70.24 0.55 18.17 16 5 O -0.53 -21.19 14.95 26.81 0.40 -20.79 16 6 C -0.18 -6.23 5.89 -20.02 -0.12 -6.35 16 7 C -0.06 -1.50 9.61 22.53 0.22 -1.29 16 8 C -0.13 -3.25 10.02 22.24 0.22 -3.03 16 9 C -0.08 -2.60 9.66 22.30 0.22 -2.39 16 10 C -0.11 -4.71 5.08 -19.80 -0.10 -4.81 16 11 C 0.06 3.38 4.82 29.10 0.14 3.52 16 12 C -0.53 -29.33 9.09 25.60 0.23 -29.10 16 13 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 14 C 0.01 0.37 5.46 84.65 0.46 0.84 16 15 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 16 Si 0.97 43.81 29.54 68.60 2.03 45.83 16 17 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 C 0.15 6.32 6.69 22.86 0.15 6.48 16 21 O -0.49 -22.40 10.71 -68.59 -0.73 -23.13 16 22 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 23 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 27 H 0.17 3.26 7.61 -2.91 -0.02 3.24 16 28 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 29 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 30 H 0.01 0.58 8.05 -2.39 -0.02 0.56 16 31 H 0.00 0.04 7.69 -2.39 -0.02 0.03 16 32 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 33 H 0.40 16.18 9.06 -74.06 -0.67 15.51 16 Total: -1.00 -71.27 295.26 5.06 -66.21 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.45 Total: 15.09 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 3.17 Total: -17.49 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.28 Total: -55.74 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -0.87 Total: -53.90 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -71.27 5.06 -66.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396021259.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.202 kcal (2) G-P(sol) polarization free energy of solvation -71.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds