Wall clock time and date at job start Mon Mar 30 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45192 * 109.46916 * 2 1 4 4 C 1.34748 * 116.99940 * 180.02562 * 3 2 1 5 5 O 1.21501 * 120.00034 * 359.97438 * 4 3 2 6 6 C 1.47466 * 120.00003 * 179.97438 * 4 3 2 7 7 C 1.39814 * 120.09242 * 0.02562 * 6 4 3 8 8 C 1.37662 * 119.90543 * 180.02562 * 7 6 4 9 9 C 1.39042 * 120.09317 * 359.97438 * 8 7 6 10 10 O 1.35691 * 119.90529 * 179.97438 * 9 8 7 11 11 C 1.38999 * 120.18313 * 0.02562 * 9 8 7 12 12 C 1.50698 * 119.94718 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.47294 * 279.99900 * 12 11 9 14 14 H 1.07999 * 119.99515 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00176 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99883 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00043 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47216 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 119.99848 * 17 15 13 20 20 H 1.48501 * 109.47057 * 239.99829 * 17 15 13 21 21 C 1.37692 * 120.09782 * 0.27432 * 11 9 8 22 22 H 1.09000 * 109.46960 * 60.00596 * 1 2 3 23 23 H 1.09007 * 109.46871 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47436 * 299.99975 * 1 2 3 25 25 H 1.08997 * 109.46958 * 239.99865 * 2 1 3 26 26 H 1.09003 * 109.46810 * 120.00160 * 2 1 3 27 27 H 1.07996 * 120.04533 * 359.97227 * 7 6 4 28 28 H 1.07994 * 119.95483 * 179.97438 * 8 7 6 29 29 H 0.96699 * 113.99882 * 270.01989 * 10 9 8 30 30 H 1.09001 * 109.46665 * 160.00281 * 12 11 9 31 31 H 1.09000 * 109.47722 * 40.00613 * 12 11 9 32 32 H 0.97004 * 119.99507 * 180.02562 * 16 15 13 33 33 H 1.07992 * 120.05138 * 179.70204 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3498 1.5455 -0.0005 5 8 4.0900 0.5820 -0.0005 6 6 3.9134 2.9082 -0.0011 7 6 3.0635 4.0183 -0.0006 8 6 3.5938 5.2887 -0.0017 9 6 4.9725 5.4687 -0.0028 10 8 5.4911 6.7226 -0.0044 11 6 5.8210 4.3677 -0.0033 12 6 7.3145 4.5689 -0.0051 13 6 7.7779 4.8799 -1.4050 14 1 7.0623 4.9275 -2.2125 15 6 9.1152 5.1036 -1.6548 16 7 9.9866 5.0451 -0.6715 17 14 9.6894 5.4898 -3.3899 18 1 8.5220 5.4964 -4.3077 19 1 10.3428 6.8232 -3.4099 20 1 10.6600 4.4563 -3.8317 21 6 5.2989 3.0936 -0.0085 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.9925 3.8794 -0.0002 28 1 2.9380 6.1468 -0.0017 29 1 5.6405 7.0853 -0.8883 30 1 7.8038 3.6604 0.3461 31 1 7.5703 5.3978 0.6549 32 1 10.9274 5.2029 -0.8472 33 1 5.9588 2.2388 -0.0137 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396021819.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:23 Heat of formation + Delta-G solvation = -119.429952 kcal Electronic energy + Delta-G solvation = -17566.938161 eV Core-core repulsion = 14557.497524 eV Total energy + Delta-G solvation = -3009.440637 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.37478 -39.09128 -36.59597 -35.86948 -33.55950 -31.93625 -31.32340 -29.84543 -27.19021 -24.33830 -23.45180 -22.57884 -21.34403 -20.25608 -17.85151 -17.41182 -16.61899 -16.48846 -16.33726 -15.15826 -14.84086 -14.60842 -14.15148 -13.95926 -13.40134 -12.95150 -12.84299 -12.53803 -12.11273 -12.01027 -11.77407 -11.61259 -11.44023 -11.26860 -10.79548 -10.65979 -10.55613 -10.33084 -10.15393 -9.61237 -9.45605 -8.48383 -8.46246 -7.97464 -6.09334 -4.14495 1.01166 1.82858 2.73659 2.79914 3.25683 3.33949 3.36779 4.09022 4.39648 4.74218 4.79211 4.80482 4.91799 5.13181 5.22210 5.27204 5.35400 5.53779 5.60711 5.75051 5.78647 5.90586 6.17328 6.37791 6.46364 6.58267 6.79428 6.88355 7.19755 7.51032 7.69435 7.85023 7.93681 8.20910 8.24883 8.89865 9.49690 11.00656 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.028650 B = 0.005105 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.087379 B = 5483.086330 C = 5986.410374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.357 6.357 4 C 0.514 3.486 5 O -0.510 6.510 6 C -0.148 4.148 7 C -0.072 4.072 8 C -0.167 4.167 9 C 0.146 3.854 10 O -0.490 6.490 11 C -0.075 4.075 12 C 0.052 3.948 13 C -0.516 4.516 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.889 5.889 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.043 4.043 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.396 0.604 30 H 0.030 0.970 31 H 0.041 0.959 32 H 0.262 0.738 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.830 -4.012 0.613 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.275 6.275 4 C 0.360 3.640 5 O -0.400 6.400 6 C -0.149 4.149 7 C -0.090 4.090 8 C -0.185 4.185 9 C 0.101 3.899 10 O -0.301 6.301 11 C -0.075 4.075 12 C 0.015 3.985 13 C -0.554 4.554 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.527 5.527 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.061 4.061 22 H 0.085 0.915 23 H 0.096 0.904 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.149 0.851 28 H 0.146 0.854 29 H 0.254 0.746 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.471 -4.365 1.257 17.086 hybrid contribution 0.477 0.079 -1.465 1.543 sum -15.994 -4.286 -0.208 16.560 Atomic orbital electron populations 1.21798 0.92766 1.02794 1.03487 1.22985 0.95153 0.80504 1.02615 1.86551 1.24331 1.31928 1.84659 1.21262 0.80148 0.90189 0.72419 1.90826 1.60286 1.42597 1.46264 1.19035 0.94145 0.89343 1.12370 1.21030 0.99361 0.91117 0.97486 1.21310 0.94618 0.97387 1.05226 1.18702 0.90026 0.85011 0.96185 1.84605 1.84779 1.26982 1.33778 1.21045 1.00111 0.90994 0.95392 1.18296 0.83314 0.98709 0.98189 1.20998 0.92647 1.48900 0.92902 0.92637 1.24993 0.96731 0.95219 0.97131 1.69967 1.02421 1.49079 1.31278 0.86491 0.78827 0.78013 0.84419 1.19732 1.20881 1.20899 1.21147 0.92371 0.97851 0.94759 0.91495 0.90383 0.91499 0.91273 0.91292 0.85082 0.85384 0.74618 0.95168 0.94084 0.92778 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.29 37.16 0.38 -0.76 16 2 C 0.06 0.67 6.20 37.16 0.23 0.90 16 3 O -0.36 -5.01 9.46 -40.62 -0.38 -5.39 16 4 C 0.51 8.72 7.89 34.49 0.27 8.99 16 5 O -0.51 -9.87 16.13 -19.27 -0.31 -10.18 16 6 C -0.15 -2.59 5.87 -104.97 -0.62 -3.20 16 7 C -0.07 -1.08 9.61 -39.20 -0.38 -1.46 16 8 C -0.17 -2.60 9.97 -39.49 -0.39 -2.99 16 9 C 0.15 2.75 6.68 -39.00 -0.26 2.49 16 10 O -0.49 -9.03 12.71 -18.78 -0.24 -9.27 16 11 C -0.07 -1.60 5.08 -104.54 -0.53 -2.13 16 12 C 0.05 1.31 4.76 -29.03 -0.14 1.17 16 13 C -0.52 -13.91 9.09 -34.44 -0.31 -14.22 16 14 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 17 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.04 -0.86 9.20 -39.20 -0.36 -1.22 16 22 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.13 1.63 7.60 -52.49 -0.40 1.23 16 28 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.40 5.97 9.06 45.56 0.41 6.38 16 30 H 0.03 0.81 8.00 -51.93 -0.42 0.40 16 31 H 0.04 1.12 7.85 -51.93 -0.41 0.71 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.14 2.81 7.62 -52.49 -0.40 2.41 16 LS Contribution 297.47 15.07 4.48 4.48 Total: -1.00 -31.37 297.47 -6.22 -37.60 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -3.29 Total: 2.83 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -2.20 Total: -10.84 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.74 Total: -25.17 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.93 Total: -24.84 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.37 -6.22 -37.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396021819.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.831 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds