Wall clock time and date at job start Mon Mar 30 2020 06:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45192 * 109.46916 * 2 1 4 4 C 1.34748 * 116.99940 * 180.02562 * 3 2 1 5 5 O 1.21501 * 120.00034 * 359.97438 * 4 3 2 6 6 C 1.47466 * 120.00003 * 179.97438 * 4 3 2 7 7 C 1.39814 * 120.09242 * 0.02562 * 6 4 3 8 8 C 1.37662 * 119.90543 * 180.02562 * 7 6 4 9 9 C 1.39042 * 120.09317 * 359.97438 * 8 7 6 10 10 O 1.35691 * 119.90529 * 179.97438 * 9 8 7 11 11 C 1.38999 * 120.18313 * 0.02562 * 9 8 7 12 12 C 1.50698 * 119.94718 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.47294 * 279.99900 * 12 11 9 14 14 H 1.07999 * 119.99515 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00176 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99883 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00043 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47216 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 119.99848 * 17 15 13 20 20 H 1.48501 * 109.47057 * 239.99829 * 17 15 13 21 21 C 1.37692 * 120.09782 * 0.27432 * 11 9 8 22 22 H 1.09000 * 109.46960 * 60.00596 * 1 2 3 23 23 H 1.09007 * 109.46871 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47436 * 299.99975 * 1 2 3 25 25 H 1.08997 * 109.46958 * 239.99865 * 2 1 3 26 26 H 1.09003 * 109.46810 * 120.00160 * 2 1 3 27 27 H 1.07996 * 120.04533 * 359.97227 * 7 6 4 28 28 H 1.07994 * 119.95483 * 179.97438 * 8 7 6 29 29 H 0.96699 * 113.99882 * 270.01989 * 10 9 8 30 30 H 1.09001 * 109.46665 * 160.00281 * 12 11 9 31 31 H 1.09000 * 109.47722 * 40.00613 * 12 11 9 32 32 H 0.97004 * 119.99507 * 180.02562 * 16 15 13 33 33 H 1.07992 * 120.05138 * 179.70204 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3498 1.5455 -0.0005 5 8 4.0900 0.5820 -0.0005 6 6 3.9134 2.9082 -0.0011 7 6 3.0635 4.0183 -0.0006 8 6 3.5938 5.2887 -0.0017 9 6 4.9725 5.4687 -0.0028 10 8 5.4911 6.7226 -0.0044 11 6 5.8210 4.3677 -0.0033 12 6 7.3145 4.5689 -0.0051 13 6 7.7779 4.8799 -1.4050 14 1 7.0623 4.9275 -2.2125 15 6 9.1152 5.1036 -1.6548 16 7 9.9866 5.0451 -0.6715 17 14 9.6894 5.4898 -3.3899 18 1 8.5220 5.4964 -4.3077 19 1 10.3428 6.8232 -3.4099 20 1 10.6600 4.4563 -3.8317 21 6 5.2989 3.0936 -0.0085 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.9925 3.8794 -0.0002 28 1 2.9380 6.1468 -0.0017 29 1 5.6405 7.0853 -0.8883 30 1 7.8038 3.6604 0.3461 31 1 7.5703 5.3978 0.6549 32 1 10.9274 5.2029 -0.8472 33 1 5.9588 2.2388 -0.0137 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396021819.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:22 Heat of formation + Delta-G solvation = -139.597436 kcal Electronic energy + Delta-G solvation = -17567.812689 eV Core-core repulsion = 14557.497524 eV Total energy + Delta-G solvation = -3010.315165 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.67992 -40.49712 -37.85405 -37.27116 -35.51727 -33.29917 -32.58391 -31.20169 -29.04310 -25.56319 -25.32578 -23.57474 -22.80938 -21.64983 -19.29691 -18.77770 -18.42763 -17.89703 -17.58824 -16.63042 -16.50018 -16.27172 -15.27330 -15.17048 -14.70107 -14.43367 -14.29274 -13.71394 -13.60155 -13.30656 -13.18137 -13.02532 -12.83953 -12.60162 -12.51568 -12.48053 -12.02999 -11.64289 -11.55854 -11.52409 -11.11814 -10.62113 -9.88039 -9.52959 -8.20714 -6.34546 -0.38620 0.41839 1.39971 1.41265 1.44110 1.54158 1.58072 2.39121 2.70961 3.11458 3.39432 3.66900 3.92027 4.00446 4.02892 4.10503 4.30790 4.36571 4.46090 4.73139 4.84351 4.96175 5.01896 5.09476 5.16921 5.21340 5.33998 5.36929 5.41297 5.72457 5.73015 5.82457 6.13064 6.66043 6.78000 6.89923 7.34554 8.89826 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.028650 B = 0.005105 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.087379 B = 5483.086330 C = 5986.410374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 O -0.348 6.348 4 C 0.518 3.482 5 O -0.543 6.543 6 C -0.153 4.153 7 C -0.046 4.046 8 C -0.149 4.149 9 C 0.141 3.859 10 O -0.501 6.501 11 C -0.108 4.108 12 C 0.063 3.937 13 C -0.525 4.525 14 H 0.061 0.939 15 C 0.005 3.995 16 N -0.931 5.931 17 Si 0.968 3.032 18 H -0.260 1.260 19 H -0.275 1.275 20 H -0.283 1.283 21 C -0.057 4.057 22 H 0.071 0.929 23 H 0.101 0.899 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.173 0.827 28 H 0.171 0.829 29 H 0.409 0.591 30 H -0.004 1.004 31 H 0.011 0.989 32 H 0.265 0.735 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.060 -3.399 -0.594 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 O -0.265 6.265 4 C 0.366 3.634 5 O -0.435 6.435 6 C -0.155 4.155 7 C -0.063 4.063 8 C -0.167 4.167 9 C 0.096 3.904 10 O -0.314 6.314 11 C -0.108 4.108 12 C 0.026 3.974 13 C -0.563 4.563 14 H 0.079 0.921 15 C -0.193 4.193 16 N -0.571 5.571 17 Si 0.792 3.208 18 H -0.184 1.184 19 H -0.200 1.200 20 H -0.209 1.209 21 C -0.076 4.076 22 H 0.090 0.910 23 H 0.119 0.881 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.190 0.810 28 H 0.188 0.812 29 H 0.268 0.732 30 H 0.014 0.986 31 H 0.029 0.971 32 H 0.074 0.926 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -19.738 -3.745 0.043 20.090 hybrid contribution 1.366 -0.166 -1.033 1.721 sum -18.372 -3.911 -0.990 18.810 Atomic orbital electron populations 1.21822 0.89669 1.04510 1.03990 1.23379 0.97461 0.78871 1.02581 1.86533 1.22135 1.33957 1.83836 1.21165 0.81044 0.89513 0.71723 1.90815 1.61336 1.43522 1.47850 1.19099 0.93196 0.90837 1.12321 1.21474 1.00924 0.89832 0.94117 1.21635 0.93129 0.98989 1.02916 1.18859 0.91255 0.84164 0.96120 1.84569 1.85087 1.26728 1.35064 1.20702 0.97974 0.92834 0.99315 1.17954 0.86666 0.95703 0.97066 1.21325 0.93041 1.48250 0.93655 0.92082 1.25945 0.96899 0.94977 1.01514 1.70109 1.02822 1.50345 1.33786 0.85352 0.78457 0.77828 0.79118 1.18366 1.20030 1.20922 1.20927 0.93785 0.96605 0.96243 0.90985 0.88079 0.90934 0.91470 0.91387 0.80966 0.81203 0.73151 0.98611 0.97083 0.92629 0.86876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 10.29 71.98 0.74 -0.94 16 2 C 0.05 0.99 6.20 71.98 0.45 1.44 16 3 O -0.35 -8.87 9.46 -56.58 -0.54 -9.41 16 4 C 0.52 17.08 7.89 70.25 0.55 17.64 16 5 O -0.54 -21.28 16.13 19.83 0.32 -20.96 16 6 C -0.15 -5.19 5.87 -20.09 -0.12 -5.31 16 7 C -0.05 -1.20 9.61 22.52 0.22 -0.99 16 8 C -0.15 -4.06 9.97 22.33 0.22 -3.84 16 9 C 0.14 5.18 6.68 22.65 0.15 5.33 16 10 O -0.50 -18.11 12.71 -90.10 -1.15 -19.25 16 11 C -0.11 -4.75 5.08 -19.81 -0.10 -4.85 16 12 C 0.06 3.41 4.76 29.10 0.14 3.55 16 13 C -0.52 -29.18 9.09 25.60 0.23 -28.95 16 14 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 15 C 0.00 0.28 5.46 84.65 0.46 0.74 16 16 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 17 Si 0.97 43.47 29.54 68.60 2.03 45.50 16 18 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 C -0.06 -2.36 9.20 22.51 0.21 -2.15 16 22 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.17 3.22 7.60 -2.91 -0.02 3.20 16 28 H 0.17 3.32 8.06 -2.91 -0.02 3.29 16 29 H 0.41 11.97 9.06 -74.06 -0.67 11.29 16 30 H 0.00 -0.26 8.00 -2.39 -0.02 -0.28 16 31 H 0.01 0.64 7.85 -2.39 -0.02 0.62 16 32 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 33 H 0.11 5.07 7.62 -2.91 -0.02 5.05 16 Total: -1.00 -70.89 297.47 4.56 -66.33 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.45 Total: 12.14 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 3.15 Total: -18.33 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.28 Total: -56.01 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -1.36 Total: -49.62 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -70.89 4.56 -66.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396021819.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.263 kcal (2) G-P(sol) polarization free energy of solvation -70.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds