Wall clock time and date at job start Mon Mar 30 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45196 * 109.47124 * 2 1 4 4 C 1.34754 * 116.99814 * 179.97438 * 3 2 1 5 5 O 1.21507 * 119.99866 * 359.97438 * 4 3 2 6 6 C 1.47404 * 119.99798 * 179.97438 * 4 3 2 7 7 C 1.40231 * 120.19850 * 270.00244 * 6 4 3 8 8 O 1.35642 * 120.15607 * 359.95166 * 7 6 4 9 9 C 1.38664 * 119.68926 * 179.97438 * 7 6 4 10 10 C 1.38094 * 120.09282 * 0.02562 * 9 7 6 11 11 C 1.38522 * 120.40230 * 359.97438 * 10 9 7 12 12 C 1.37810 * 120.30404 * 359.74152 * 11 10 9 13 13 C 1.50704 * 120.04669 * 180.25437 * 12 11 10 14 14 C 1.50694 * 109.47417 * 265.28453 * 13 12 11 15 15 H 1.08006 * 119.99635 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99988 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99914 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00280 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47328 * 90.00028 * 18 16 14 20 20 H 1.48502 * 109.47265 * 210.00309 * 18 16 14 21 21 H 1.48500 * 109.47070 * 330.00136 * 18 16 14 22 22 H 1.08996 * 109.47065 * 300.00386 * 1 2 3 23 23 H 1.09005 * 109.46402 * 60.00386 * 1 2 3 24 24 H 1.09003 * 109.47008 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47065 * 239.99614 * 2 1 3 26 26 H 1.08996 * 109.46551 * 119.99888 * 2 1 3 27 27 H 0.96700 * 113.99576 * 89.99738 * 8 7 6 28 28 H 1.08004 * 119.95396 * 179.97438 * 9 7 6 29 29 H 1.08000 * 119.80313 * 180.02562 * 10 9 7 30 30 H 1.07996 * 119.84477 * 180.02562 * 11 10 9 31 31 H 1.09006 * 109.46906 * 25.28712 * 13 12 11 32 32 H 1.09004 * 109.46771 * 145.27719 * 13 12 11 33 33 H 0.96995 * 120.00318 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3500 1.5454 0.0005 5 8 4.0901 0.5818 0.0015 6 6 3.9134 2.9076 0.0000 7 6 4.1835 3.5587 -1.2123 8 8 3.9285 2.9376 -2.3909 9 6 4.7130 4.8402 -1.2004 10 6 4.9731 5.4709 0.0002 11 6 4.7077 4.8313 1.2000 12 6 4.1760 3.5599 1.2074 13 6 3.8842 2.8717 2.5160 14 6 5.0543 2.0024 2.8983 15 1 5.9223 1.9528 2.2575 16 6 5.0163 1.2695 4.0655 17 7 6.0373 0.5104 4.3989 18 14 3.5148 1.3546 5.1734 19 1 2.5448 0.3035 4.7742 20 1 3.9271 1.1380 6.5835 21 1 2.8788 2.6902 5.0433 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.0380 3.0946 -2.7335 28 1 4.9231 5.3455 -2.1316 29 1 5.3851 6.4692 0.0040 30 1 4.9142 5.3331 2.1337 31 1 3.7190 3.6200 3.2912 32 1 2.9919 2.2545 2.4109 33 1 6.0108 -0.0049 5.2202 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396024698.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:45 Heat of formation + Delta-G solvation = -110.070547 kcal Electronic energy + Delta-G solvation = -18410.722780 eV Core-core repulsion = 15401.687997 eV Total energy + Delta-G solvation = -3009.034783 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.27871 -38.84389 -36.73650 -35.93694 -33.39042 -31.82810 -31.31626 -29.87102 -27.76374 -24.44738 -23.12584 -22.47727 -21.07255 -20.16000 -17.94457 -17.31431 -16.81244 -16.39806 -16.30087 -15.28304 -15.21762 -14.34303 -14.21020 -13.52377 -13.38237 -13.04745 -12.70071 -12.48177 -12.27571 -12.02841 -11.63875 -11.54027 -11.39174 -11.27216 -10.92804 -10.59945 -10.26592 -10.15950 -10.07094 -9.76372 -9.41061 -8.60121 -8.46658 -8.12569 -6.07483 -4.07623 1.37128 1.67261 2.78076 3.10758 3.25383 3.32934 3.34127 3.91846 4.31079 4.38581 5.03405 5.10208 5.17309 5.19924 5.24023 5.39465 5.48064 5.64653 5.75720 5.82619 5.92630 5.98970 6.06180 6.27956 6.52941 6.56596 6.72118 6.82101 6.87626 7.10028 7.25535 7.60369 7.76813 8.31324 8.45416 8.98917 9.50443 11.05476 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.015774 B = 0.010145 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.608672 B = 2759.327404 C = 3900.170378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.059 3.941 3 O -0.361 6.361 4 C 0.527 3.473 5 O -0.472 6.472 6 C -0.132 4.132 7 C 0.137 3.863 8 O -0.495 6.495 9 C -0.169 4.169 10 C -0.085 4.085 11 C -0.131 4.131 12 C 0.023 3.977 13 C 0.008 3.992 14 C -0.512 4.512 15 H 0.077 0.923 16 C 0.074 3.926 17 N -0.893 5.893 18 Si 0.872 3.128 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.264 1.264 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.388 0.612 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.038 0.962 32 H 0.023 0.977 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.426 6.871 -9.981 15.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.015 4.015 3 O -0.279 6.279 4 C 0.368 3.632 5 O -0.356 6.356 6 C -0.134 4.134 7 C 0.093 3.907 8 O -0.305 6.305 9 C -0.187 4.187 10 C -0.103 4.103 11 C -0.149 4.149 12 C 0.023 3.977 13 C -0.029 4.029 14 C -0.550 4.550 15 H 0.095 0.905 16 C -0.129 4.129 17 N -0.531 5.531 18 Si 0.699 3.301 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.188 1.188 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.244 0.756 28 H 0.147 0.853 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.564 6.189 -9.781 15.015 hybrid contribution -1.046 -0.195 0.597 1.221 sum -10.610 5.994 -9.184 15.259 Atomic orbital electron populations 1.21784 0.93006 1.02616 1.03229 1.22976 0.94913 0.80865 1.02786 1.86601 1.24620 1.31807 1.84887 1.20798 0.80309 0.89803 0.72299 1.90881 1.60164 1.41777 1.42782 1.19285 1.07072 0.92801 0.94204 1.18274 0.98556 0.90495 0.83414 1.84789 1.36977 1.73276 1.35456 1.21091 1.04790 0.93946 0.98897 1.21118 0.97729 0.99594 0.91870 1.21040 1.00630 0.94814 0.98406 1.20235 0.90759 0.92292 0.94449 1.18961 0.98266 0.96194 0.89485 1.20800 1.01801 1.25125 1.07244 0.90471 1.24942 0.95924 0.94657 0.97337 1.69892 1.30375 1.28339 1.24462 0.86899 0.83722 0.79177 0.80346 1.20170 1.20973 1.18810 0.91507 0.91788 0.90503 0.91484 0.90950 0.75644 0.85329 0.85552 0.84966 0.94341 0.95859 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.29 37.16 0.38 -1.32 16 2 C 0.06 0.92 6.20 37.16 0.23 1.15 16 3 O -0.36 -6.80 10.23 -40.64 -0.42 -7.22 16 4 C 0.53 11.67 5.49 34.46 0.19 11.85 16 5 O -0.47 -12.18 16.90 -19.27 -0.33 -12.51 16 6 C -0.13 -2.75 5.76 -104.86 -0.60 -3.35 16 7 C 0.14 2.39 6.72 -38.68 -0.26 2.13 16 8 O -0.50 -7.62 12.95 -18.63 -0.24 -7.86 16 9 C -0.17 -2.49 9.98 -39.48 -0.39 -2.89 16 10 C -0.08 -1.24 10.03 -39.53 -0.40 -1.63 16 11 C -0.13 -2.31 9.66 -39.63 -0.38 -2.70 16 12 C 0.02 0.49 5.10 -104.22 -0.53 -0.04 16 13 C 0.01 0.19 3.70 -29.04 -0.11 0.08 16 14 C -0.51 -14.95 9.65 -34.44 -0.33 -15.28 16 15 H 0.08 2.52 7.98 -52.48 -0.42 2.10 16 16 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 17 N -0.89 -28.00 13.96 55.43 0.77 -27.23 16 18 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 27 H 0.39 3.83 9.06 45.56 0.41 4.25 16 28 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 29 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.13 2.13 8.06 -52.49 -0.42 1.70 16 31 H 0.04 0.89 7.11 -51.93 -0.37 0.52 16 32 H 0.02 0.58 6.71 -51.93 -0.35 0.23 16 33 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 294.35 15.07 4.44 4.44 Total: -1.00 -35.49 294.35 -6.02 -41.50 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -3.27 Total: 1.87 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -2.30 Total: -9.90 kcal Atomic # 7 Polarization: -28.00 SS G_CDS: 0.77 Total: -27.23 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.98 Total: -27.59 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -35.49 -6.02 -41.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396024698.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.567 kcal (2) G-P(sol) polarization free energy of solvation -35.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds