Wall clock time and date at job start Mon Mar 30 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45196 * 109.47124 * 2 1 4 4 C 1.34754 * 116.99814 * 179.97438 * 3 2 1 5 5 O 1.21507 * 119.99866 * 359.97438 * 4 3 2 6 6 C 1.47404 * 119.99798 * 179.97438 * 4 3 2 7 7 C 1.40231 * 120.19850 * 270.00244 * 6 4 3 8 8 O 1.35642 * 120.15607 * 359.95166 * 7 6 4 9 9 C 1.38664 * 119.68926 * 179.97438 * 7 6 4 10 10 C 1.38094 * 120.09282 * 0.02562 * 9 7 6 11 11 C 1.38522 * 120.40230 * 359.97438 * 10 9 7 12 12 C 1.37810 * 120.30404 * 359.74152 * 11 10 9 13 13 C 1.50704 * 120.04669 * 180.25437 * 12 11 10 14 14 C 1.50694 * 109.47417 * 265.28453 * 13 12 11 15 15 H 1.08006 * 119.99635 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99988 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99914 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00280 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47328 * 90.00028 * 18 16 14 20 20 H 1.48502 * 109.47265 * 210.00309 * 18 16 14 21 21 H 1.48500 * 109.47070 * 330.00136 * 18 16 14 22 22 H 1.08996 * 109.47065 * 300.00386 * 1 2 3 23 23 H 1.09005 * 109.46402 * 60.00386 * 1 2 3 24 24 H 1.09003 * 109.47008 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47065 * 239.99614 * 2 1 3 26 26 H 1.08996 * 109.46551 * 119.99888 * 2 1 3 27 27 H 0.96700 * 113.99576 * 89.99738 * 8 7 6 28 28 H 1.08004 * 119.95396 * 179.97438 * 9 7 6 29 29 H 1.08000 * 119.80313 * 180.02562 * 10 9 7 30 30 H 1.07996 * 119.84477 * 180.02562 * 11 10 9 31 31 H 1.09006 * 109.46906 * 25.28712 * 13 12 11 32 32 H 1.09004 * 109.46771 * 145.27719 * 13 12 11 33 33 H 0.96995 * 120.00318 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3500 1.5454 0.0005 5 8 4.0901 0.5818 0.0015 6 6 3.9134 2.9076 0.0000 7 6 4.1835 3.5587 -1.2123 8 8 3.9285 2.9376 -2.3909 9 6 4.7130 4.8402 -1.2004 10 6 4.9731 5.4709 0.0002 11 6 4.7077 4.8313 1.2000 12 6 4.1760 3.5599 1.2074 13 6 3.8842 2.8717 2.5160 14 6 5.0543 2.0024 2.8983 15 1 5.9223 1.9528 2.2575 16 6 5.0163 1.2695 4.0655 17 7 6.0373 0.5104 4.3989 18 14 3.5148 1.3546 5.1734 19 1 2.5448 0.3035 4.7742 20 1 3.9271 1.1380 6.5835 21 1 2.8788 2.6902 5.0433 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.0380 3.0946 -2.7335 28 1 4.9231 5.3455 -2.1316 29 1 5.3851 6.4692 0.0040 30 1 4.9142 5.3331 2.1337 31 1 3.7190 3.6200 3.2912 32 1 2.9919 2.2545 2.4109 33 1 6.0108 -0.0049 5.2202 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396024698.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:45 Heat of formation + Delta-G solvation = -135.736843 kcal Electronic energy + Delta-G solvation = -18411.835754 eV Core-core repulsion = 15401.687997 eV Total energy + Delta-G solvation = -3010.147757 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.81496 -40.25726 -38.05790 -37.58141 -35.34697 -33.49154 -32.68239 -31.26630 -29.50047 -25.92513 -24.89252 -23.71732 -22.60534 -21.68839 -19.36601 -19.03416 -18.75772 -17.95364 -17.78785 -16.68684 -16.59120 -16.15659 -15.59651 -15.11268 -14.82146 -14.62810 -14.23536 -14.03499 -13.75060 -13.49124 -13.18088 -12.94935 -12.70368 -12.60380 -12.49395 -12.44023 -12.00066 -11.84583 -11.69960 -11.58999 -11.26042 -10.85715 -9.84731 -9.53321 -8.34918 -6.41036 0.03709 0.33336 1.08559 1.28189 1.30279 1.42176 1.66477 2.28303 2.61003 2.97405 3.10041 3.71167 3.91236 3.94398 4.05192 4.10397 4.27885 4.37387 4.43259 4.66088 4.75999 4.82505 4.88197 4.95031 5.02927 5.06648 5.25288 5.35711 5.41465 5.45570 5.67300 5.84795 6.17221 6.63794 6.66200 6.72067 7.21013 8.82436 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.015774 B = 0.010145 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.608672 B = 2759.327404 C = 3900.170378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.046 3.954 3 O -0.355 6.355 4 C 0.528 3.472 5 O -0.528 6.528 6 C -0.170 4.170 7 C 0.137 3.863 8 O -0.504 6.504 9 C -0.153 4.153 10 C -0.065 4.065 11 C -0.139 4.139 12 C -0.015 4.015 13 C 0.016 3.984 14 C -0.516 4.516 15 H 0.021 0.979 16 C 0.007 3.993 17 N -0.946 5.946 18 Si 0.945 3.055 19 H -0.273 1.273 20 H -0.274 1.274 21 H -0.234 1.234 22 H 0.064 0.936 23 H 0.082 0.918 24 H 0.104 0.896 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.412 0.588 28 H 0.171 0.829 29 H 0.176 0.824 30 H 0.145 0.855 31 H 0.054 0.946 32 H 0.014 0.986 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.446 9.505 -10.951 19.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 O -0.272 6.272 4 C 0.372 3.628 5 O -0.417 6.417 6 C -0.171 4.171 7 C 0.092 3.908 8 O -0.317 6.317 9 C -0.171 4.171 10 C -0.083 4.083 11 C -0.157 4.157 12 C -0.015 4.015 13 C -0.021 4.021 14 C -0.554 4.554 15 H 0.039 0.961 16 C -0.190 4.190 17 N -0.586 5.586 18 Si 0.766 3.234 19 H -0.198 1.198 20 H -0.200 1.200 21 H -0.157 1.157 22 H 0.084 0.916 23 H 0.101 0.899 24 H 0.122 0.878 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.272 0.728 28 H 0.189 0.811 29 H 0.193 0.807 30 H 0.163 0.837 31 H 0.072 0.928 32 H 0.032 0.968 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.633 8.860 -10.777 18.165 hybrid contribution -0.369 -1.008 0.720 1.293 sum -12.002 7.852 -10.057 17.517 Atomic orbital electron populations 1.21812 0.88964 1.04683 1.04055 1.23360 0.98011 0.79414 1.01949 1.86613 1.22987 1.33583 1.84017 1.21298 0.80853 0.90094 0.70530 1.90839 1.61488 1.43647 1.45675 1.19530 1.09243 0.92528 0.95837 1.18469 0.98289 0.91272 0.82753 1.84729 1.38996 1.73572 1.34403 1.21584 1.02170 0.92499 1.00826 1.21623 0.95296 1.01108 0.90269 1.21286 1.00187 0.93590 1.00625 1.20097 0.94177 0.94211 0.93060 1.18752 0.95544 0.95709 0.92105 1.20966 1.01826 1.26220 1.06354 0.96076 1.26004 0.99664 0.94036 0.99281 1.70067 1.33202 1.29850 1.25492 0.85749 0.79066 0.80669 0.77874 1.19804 1.19957 1.15675 0.91646 0.89928 0.87784 0.90853 0.93469 0.72845 0.81144 0.80670 0.83748 0.92785 0.96779 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 10.29 71.98 0.74 -2.16 16 2 C 0.05 1.48 6.20 71.98 0.45 1.93 16 3 O -0.35 -13.63 10.23 -56.65 -0.58 -14.21 16 4 C 0.53 24.34 5.49 70.24 0.39 24.72 16 5 O -0.53 -29.05 16.90 19.81 0.33 -28.72 16 6 C -0.17 -7.15 5.76 -20.02 -0.12 -7.27 16 7 C 0.14 4.55 6.72 22.86 0.15 4.70 16 8 O -0.50 -14.62 12.95 -89.56 -1.16 -15.78 16 9 C -0.15 -3.88 9.98 22.34 0.22 -3.65 16 10 C -0.07 -1.62 10.03 22.30 0.22 -1.40 16 11 C -0.14 -4.66 9.66 22.24 0.21 -4.44 16 12 C -0.02 -0.65 5.10 -19.60 -0.10 -0.75 16 13 C 0.02 0.79 3.70 29.10 0.11 0.90 16 14 C -0.52 -31.64 9.65 25.60 0.25 -31.39 16 15 H 0.02 1.48 7.98 -2.91 -0.02 1.45 16 16 C 0.01 0.45 5.47 84.65 0.46 0.91 16 17 N -0.95 -62.15 13.96 21.45 0.30 -61.85 16 18 Si 0.94 45.13 27.47 68.60 1.88 47.01 16 19 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 21 H -0.23 -9.97 6.54 99.48 0.65 -9.32 16 22 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 24 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.41 7.19 9.06 -74.06 -0.67 6.52 16 28 H 0.17 2.95 8.06 -2.91 -0.02 2.92 16 29 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 31 H 0.05 2.46 7.11 -2.38 -0.02 2.44 16 32 H 0.01 0.71 6.71 -2.39 -0.02 0.69 16 33 H 0.27 16.28 8.31 -92.71 -0.77 15.51 16 Total: -1.00 -84.01 294.35 4.17 -79.84 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.40 Total: 11.59 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 2.99 Total: -17.89 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: 0.30 Total: -61.85 kcal Atomic # 8 Polarization: -57.29 SS G_CDS: -1.40 Total: -58.70 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Total: -84.01 4.17 -79.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396024698.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.893 kcal (2) G-P(sol) polarization free energy of solvation -84.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds