Wall clock time and date at job start Mon Mar 30 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42904 * 109.47177 * 2 1 4 4 C 1.35698 * 117.00048 * 179.97438 * 3 2 1 5 5 C 1.39027 * 119.90750 * 359.72281 * 4 3 2 6 6 C 1.37660 * 120.09404 * 179.72580 * 5 4 3 7 7 C 1.39815 * 119.90337 * 0.54980 * 6 5 4 8 8 C 1.47469 * 120.09272 * 179.70643 * 7 6 5 9 9 O 1.21499 * 120.00239 * 185.67094 * 8 7 6 10 10 O 1.34749 * 120.00017 * 5.66582 * 8 7 6 11 11 C 1.39775 * 119.81655 * 359.72096 * 7 6 5 12 12 C 1.50699 * 120.04678 * 179.97438 * 11 7 6 13 13 C 1.50692 * 109.47033 * 280.88138 * 12 11 7 14 14 H 1.08001 * 120.00294 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99927 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00070 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00340 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47212 * 59.99343 * 17 15 13 19 19 H 1.48497 * 109.47586 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46822 * 299.99925 * 17 15 13 21 21 C 1.37702 * 119.90094 * 0.02562 * 11 7 6 22 22 H 1.09003 * 109.46835 * 60.00581 * 1 2 3 23 23 H 1.08999 * 109.46991 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47523 * 300.00376 * 1 2 3 25 25 H 1.09001 * 109.47523 * 239.99624 * 2 1 3 26 26 H 1.09002 * 109.47281 * 119.99126 * 2 1 3 27 27 H 1.07997 * 119.95300 * 359.97438 * 5 4 3 28 28 H 1.08002 * 120.05312 * 180.24816 * 6 5 4 29 29 H 0.96700 * 116.99749 * 180.02562 * 10 8 7 30 30 H 1.09003 * 109.46937 * 40.88457 * 12 11 7 31 31 H 1.09005 * 109.46588 * 160.88022 * 12 11 7 32 32 H 0.96998 * 120.00338 * 180.02562 * 16 15 13 33 33 H 1.08004 * 119.95079 * 180.02562 * 21 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3516 1.5251 0.0005 5 6 4.1967 0.4212 0.0069 6 6 5.5620 0.5971 0.0018 7 6 6.0985 1.8882 0.0018 8 6 7.5604 2.0815 0.0028 9 8 8.0255 3.1991 0.1068 10 8 8.3806 1.0185 -0.1114 11 6 5.2452 2.9953 0.0011 12 6 5.8179 4.3893 0.0017 13 6 6.2556 4.7519 1.3973 14 1 6.1312 4.0440 2.2034 15 6 6.8140 5.9879 1.6454 16 7 6.9650 6.8502 0.6640 17 14 7.3573 6.4372 3.3752 18 1 8.3930 5.4770 3.8339 19 1 7.9214 7.8109 3.3759 20 1 6.1897 6.3807 4.2911 21 6 3.8807 2.8104 0.0010 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.7815 -0.5757 0.0118 28 1 6.2179 -0.2610 0.0027 29 1 9.3314 1.1950 -0.1054 30 1 6.6752 4.4302 -0.6702 31 1 5.0580 5.0943 -0.3356 32 1 7.3582 7.7196 0.8384 33 1 3.2207 3.6653 0.0000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396073113.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:53 Heat of formation + Delta-G solvation = -107.641210 kcal Electronic energy + Delta-G solvation = -17970.514867 eV Core-core repulsion = 14961.585428 eV Total energy + Delta-G solvation = -3008.929439 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.12221 -39.16967 -37.11796 -35.31118 -33.16101 -32.01638 -31.20605 -29.61601 -27.29567 -24.26551 -23.32947 -22.69272 -21.34830 -19.88121 -17.54502 -17.29975 -16.45753 -16.22763 -16.03851 -15.54811 -14.72003 -14.49494 -14.02705 -13.48498 -13.27698 -13.04583 -12.78763 -12.52186 -12.26348 -11.86223 -11.78549 -11.46767 -11.25195 -10.90648 -10.77845 -10.63639 -10.49802 -10.42812 -9.64630 -9.40203 -9.11372 -8.25544 -8.14536 -7.86188 -5.87991 -3.86241 1.37923 1.86987 3.27883 3.31583 3.41530 3.44308 3.47927 3.74842 4.32757 4.59644 4.82531 4.85953 5.09030 5.16413 5.22532 5.40692 5.50019 5.66341 5.68035 5.71153 5.89556 6.07797 6.22149 6.44082 6.57734 6.67567 6.96428 7.15427 7.19036 7.63317 7.66636 7.89149 8.04664 8.43548 8.75556 9.11409 9.72342 11.23956 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.006658 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.920693 B = 4204.638654 C = 5084.153586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.315 6.315 4 C 0.158 3.842 5 C -0.250 4.250 6 C -0.028 4.028 7 C -0.166 4.166 8 C 0.499 3.501 9 O -0.449 6.449 10 O -0.534 6.534 11 C 0.061 3.939 12 C 0.042 3.958 13 C -0.482 4.482 14 H 0.049 0.951 15 C 0.063 3.937 16 N -0.895 5.895 17 Si 0.892 3.108 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.171 4.171 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.125 0.875 28 H 0.130 0.870 29 H 0.403 0.597 30 H 0.060 0.940 31 H 0.026 0.974 32 H 0.259 0.741 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 -15.199 -2.506 16.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.228 6.228 4 C 0.112 3.888 5 C -0.269 4.269 6 C -0.046 4.046 7 C -0.167 4.167 8 C 0.341 3.659 9 O -0.333 6.333 10 O -0.347 6.347 11 C 0.061 3.939 12 C 0.006 3.994 13 C -0.521 4.521 14 H 0.068 0.932 15 C -0.138 4.138 16 N -0.534 5.534 17 Si 0.720 3.280 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.189 4.189 22 H 0.085 0.915 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.143 0.857 28 H 0.148 0.852 29 H 0.260 0.740 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.457 -14.613 -2.513 16.598 hybrid contribution 1.055 0.050 1.026 1.473 sum -6.402 -14.563 -1.487 15.978 Atomic orbital electron populations 1.21772 0.92997 1.02558 1.03573 1.22756 0.95650 0.82414 1.01369 1.86036 1.19628 1.28921 1.88236 1.19312 0.81676 0.94354 0.93462 1.20942 0.94052 0.97570 1.14287 1.21101 0.94281 0.96268 0.92947 1.18818 0.89444 0.93856 1.14596 1.20858 0.87823 0.82114 0.75067 1.91132 1.76816 1.23766 1.41597 1.84535 1.22558 1.40570 1.87071 1.20698 0.91012 0.97889 0.84307 1.18687 0.96955 0.84557 0.99207 1.20638 1.39935 0.99361 0.92131 0.93233 1.24850 0.95742 0.96474 0.96737 1.69931 1.45057 1.07247 1.31174 0.86659 0.78939 0.77337 0.85025 1.20432 1.21324 1.20392 1.20339 0.94780 0.94389 1.09435 0.91540 0.90617 0.91505 0.92094 0.92071 0.85739 0.85167 0.74047 0.92242 0.95591 0.93094 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.15 0.38 -0.87 16 2 C 0.05 0.56 5.45 37.15 0.20 0.77 16 3 O -0.31 -4.76 10.12 -18.80 -0.19 -4.95 16 4 C 0.16 2.68 6.70 -39.01 -0.26 2.42 16 5 C -0.25 -3.79 9.01 -39.50 -0.36 -4.15 16 6 C -0.03 -0.45 9.61 -39.20 -0.38 -0.83 16 7 C -0.17 -3.37 5.87 -104.97 -0.62 -3.99 16 8 C 0.50 10.35 8.18 34.49 0.28 10.63 16 9 O -0.45 -11.29 12.99 -19.26 -0.25 -11.54 16 10 O -0.53 -8.42 12.69 -40.63 -0.52 -8.94 16 11 C 0.06 1.38 5.11 -104.24 -0.53 0.84 16 12 C 0.04 1.13 4.40 -29.04 -0.13 1.00 16 13 C -0.48 -14.02 7.50 -34.44 -0.26 -14.28 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 16 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 17 Si 0.89 22.66 29.54 -169.99 -5.02 17.63 16 18 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 C -0.17 -3.40 9.59 -39.50 -0.38 -3.77 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 26 H 0.06 0.59 7.64 -51.93 -0.40 0.19 16 27 H 0.12 1.47 6.28 -52.49 -0.33 1.14 16 28 H 0.13 1.82 7.62 -52.49 -0.40 1.42 16 29 H 0.40 4.58 9.11 45.56 0.42 4.99 16 30 H 0.06 1.73 6.16 -51.93 -0.32 1.41 16 31 H 0.03 0.71 7.99 -51.93 -0.41 0.30 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.14 2.64 8.03 -52.48 -0.42 2.22 16 LS Contribution 288.06 15.07 4.34 4.34 Total: -1.00 -34.07 288.06 -6.11 -40.18 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -3.07 Total: 0.51 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -2.14 Total: -10.48 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.74 Total: -26.76 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.96 Total: -25.42 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -34.07 -6.11 -40.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396073113.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.462 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds