Wall clock time and date at job start Mon Mar 30 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42904 * 109.47177 * 2 1 4 4 C 1.35698 * 117.00048 * 179.97438 * 3 2 1 5 5 C 1.39027 * 119.90750 * 359.72281 * 4 3 2 6 6 C 1.37660 * 120.09404 * 179.72580 * 5 4 3 7 7 C 1.39815 * 119.90337 * 0.54980 * 6 5 4 8 8 C 1.47469 * 120.09272 * 179.70643 * 7 6 5 9 9 O 1.21499 * 120.00239 * 185.67094 * 8 7 6 10 10 O 1.34749 * 120.00017 * 5.66582 * 8 7 6 11 11 C 1.39775 * 119.81655 * 359.72096 * 7 6 5 12 12 C 1.50699 * 120.04678 * 179.97438 * 11 7 6 13 13 C 1.50692 * 109.47033 * 280.88138 * 12 11 7 14 14 H 1.08001 * 120.00294 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99927 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00070 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00340 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47212 * 59.99343 * 17 15 13 19 19 H 1.48497 * 109.47586 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46822 * 299.99925 * 17 15 13 21 21 C 1.37702 * 119.90094 * 0.02562 * 11 7 6 22 22 H 1.09003 * 109.46835 * 60.00581 * 1 2 3 23 23 H 1.08999 * 109.46991 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47523 * 300.00376 * 1 2 3 25 25 H 1.09001 * 109.47523 * 239.99624 * 2 1 3 26 26 H 1.09002 * 109.47281 * 119.99126 * 2 1 3 27 27 H 1.07997 * 119.95300 * 359.97438 * 5 4 3 28 28 H 1.08002 * 120.05312 * 180.24816 * 6 5 4 29 29 H 0.96700 * 116.99749 * 180.02562 * 10 8 7 30 30 H 1.09003 * 109.46937 * 40.88457 * 12 11 7 31 31 H 1.09005 * 109.46588 * 160.88022 * 12 11 7 32 32 H 0.96998 * 120.00338 * 180.02562 * 16 15 13 33 33 H 1.08004 * 119.95079 * 180.02562 * 21 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3516 1.5251 0.0005 5 6 4.1967 0.4212 0.0069 6 6 5.5620 0.5971 0.0018 7 6 6.0985 1.8882 0.0018 8 6 7.5604 2.0815 0.0028 9 8 8.0255 3.1991 0.1068 10 8 8.3806 1.0185 -0.1114 11 6 5.2452 2.9953 0.0011 12 6 5.8179 4.3893 0.0017 13 6 6.2556 4.7519 1.3973 14 1 6.1312 4.0440 2.2034 15 6 6.8140 5.9879 1.6454 16 7 6.9650 6.8502 0.6640 17 14 7.3573 6.4372 3.3752 18 1 8.3930 5.4770 3.8339 19 1 7.9214 7.8109 3.3759 20 1 6.1897 6.3807 4.2911 21 6 3.8807 2.8104 0.0010 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.7815 -0.5757 0.0118 28 1 6.2179 -0.2610 0.0027 29 1 9.3314 1.1950 -0.1054 30 1 6.6752 4.4302 -0.6702 31 1 5.0580 5.0943 -0.3356 32 1 7.3582 7.7196 0.8384 33 1 3.2207 3.6653 0.0000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396073113.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:53 Heat of formation + Delta-G solvation = -131.131276 kcal Electronic energy + Delta-G solvation = -17971.533473 eV Core-core repulsion = 14961.585428 eV Total energy + Delta-G solvation = -3009.948045 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.53794 -40.56316 -38.48913 -36.84475 -35.20060 -33.00334 -32.92596 -30.91029 -29.17493 -25.89108 -24.67994 -24.11362 -22.85566 -21.24892 -18.91823 -18.75264 -18.42941 -17.89002 -17.03350 -16.85566 -16.52012 -16.29807 -15.47544 -14.78549 -14.52861 -14.34126 -14.28837 -14.02585 -13.63943 -13.28206 -13.14983 -13.00513 -12.73554 -12.65024 -12.49743 -12.24548 -12.01183 -11.66675 -11.47687 -11.43001 -10.92327 -10.45042 -9.75650 -9.24709 -8.12248 -6.17957 -0.08243 0.43796 1.36012 1.40520 1.47347 1.78382 2.17884 2.35244 2.43345 2.88039 3.22301 3.79615 3.92972 4.12784 4.15876 4.25069 4.35257 4.43984 4.49428 4.71018 4.91664 4.99680 5.03805 5.16063 5.26549 5.27006 5.32939 5.38565 5.71044 5.74621 5.88395 5.92555 6.23082 6.44242 6.86607 7.29982 7.44279 9.00052 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.006658 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.920693 B = 4204.638654 C = 5084.153586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.039 3.961 3 O -0.328 6.328 4 C 0.171 3.829 5 C -0.229 4.229 6 C -0.010 4.010 7 C -0.191 4.191 8 C 0.506 3.494 9 O -0.509 6.509 10 O -0.511 6.511 11 C 0.032 3.968 12 C 0.054 3.946 13 C -0.489 4.489 14 H 0.043 0.957 15 C 0.005 3.995 16 N -0.933 5.933 17 Si 0.958 3.042 18 H -0.276 1.276 19 H -0.280 1.280 20 H -0.265 1.265 21 C -0.191 4.191 22 H 0.061 0.939 23 H 0.105 0.895 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.173 0.827 28 H 0.166 0.834 29 H 0.423 0.577 30 H 0.027 0.973 31 H -0.002 1.002 32 H 0.261 0.739 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.009 -18.812 -1.598 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.035 4.035 3 O -0.242 6.242 4 C 0.125 3.875 5 C -0.248 4.248 6 C -0.028 4.028 7 C -0.193 4.193 8 C 0.350 3.650 9 O -0.397 6.397 10 O -0.326 6.326 11 C 0.032 3.968 12 C 0.017 3.983 13 C -0.527 4.527 14 H 0.061 0.939 15 C -0.192 4.192 16 N -0.574 5.574 17 Si 0.783 3.217 18 H -0.201 1.201 19 H -0.205 1.205 20 H -0.190 1.190 21 C -0.210 4.210 22 H 0.080 0.920 23 H 0.124 0.876 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.191 0.809 28 H 0.184 0.816 29 H 0.284 0.716 30 H 0.045 0.955 31 H 0.016 0.984 32 H 0.069 0.931 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.417 -18.277 -1.607 20.186 hybrid contribution 1.225 0.965 0.673 1.698 sum -7.192 -17.312 -0.935 18.769 Atomic orbital electron populations 1.21825 0.91494 1.04344 1.03043 1.23242 0.96961 0.80232 1.03106 1.86050 1.18297 1.32338 1.87500 1.19231 0.83053 0.93550 0.91713 1.21415 0.93153 0.98975 1.11215 1.21435 0.95407 0.95268 0.90691 1.18933 0.89084 0.94980 1.16291 1.21045 0.88555 0.81960 0.73405 1.91117 1.77824 1.26124 1.44677 1.84458 1.24005 1.38110 1.85989 1.20284 0.92478 0.96219 0.87864 1.18304 0.94979 0.87398 0.97613 1.20887 1.39413 0.99321 0.93096 0.93888 1.25753 0.95923 0.96498 1.01030 1.70071 1.46212 1.07654 1.33426 0.85619 0.78810 0.77221 0.80062 1.20127 1.20469 1.18986 1.20208 0.93779 0.96014 1.10985 0.92001 0.87614 0.92203 0.90070 0.90365 0.80930 0.81608 0.71625 0.95471 0.98418 0.93059 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.28 71.98 0.74 -1.22 16 2 C 0.04 0.65 5.45 71.98 0.39 1.04 16 3 O -0.33 -9.09 10.12 -90.18 -0.91 -10.00 16 4 C 0.17 5.46 6.70 22.64 0.15 5.61 16 5 C -0.23 -5.93 9.01 22.32 0.20 -5.73 16 6 C -0.01 -0.29 9.61 22.51 0.22 -0.08 16 7 C -0.19 -7.71 5.87 -20.09 -0.12 -7.83 16 8 C 0.51 21.06 8.18 70.25 0.57 21.63 16 9 O -0.51 -26.74 12.99 19.84 0.26 -26.49 16 10 O -0.51 -15.07 12.69 -56.60 -0.72 -15.79 16 11 C 0.03 1.49 5.11 -19.62 -0.10 1.39 16 12 C 0.05 3.08 4.40 29.10 0.13 3.21 16 13 C -0.49 -29.81 7.50 25.60 0.19 -29.61 16 14 H 0.04 2.60 7.74 -2.91 -0.02 2.57 16 15 C 0.00 0.30 5.46 84.66 0.46 0.76 16 16 N -0.93 -60.04 13.29 21.45 0.28 -59.76 16 17 Si 0.96 47.62 29.54 68.60 2.03 49.64 16 18 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 19 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 21 C -0.19 -7.77 9.59 22.32 0.21 -7.56 16 22 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.08 1.07 7.67 -2.39 -0.02 1.06 16 26 H 0.08 1.09 7.64 -2.39 -0.02 1.07 16 27 H 0.17 2.84 6.28 -2.91 -0.02 2.82 16 28 H 0.17 3.69 7.62 -2.91 -0.02 3.67 16 29 H 0.42 8.82 9.11 -74.06 -0.67 8.14 16 30 H 0.03 1.72 6.16 -2.39 -0.01 1.71 16 31 H 0.00 -0.15 7.99 -2.38 -0.02 -0.17 16 32 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 33 H 0.12 5.10 8.03 -2.91 -0.02 5.08 16 Total: -1.00 -79.03 288.06 4.45 -74.57 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 0.46 Total: 6.20 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 3.05 Total: -18.39 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.28 Total: -59.76 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -1.37 Total: -52.27 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.64 kcal Total: -79.03 4.45 -74.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396073113.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.556 kcal (2) G-P(sol) polarization free energy of solvation -79.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds