Wall clock time and date at job start Mon Mar 30 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.46917 * 2 1 4 4 C 1.35639 * 116.99536 * 179.97438 * 3 2 1 5 5 C 1.38708 * 120.15651 * 0.02562 * 4 3 2 6 6 C 1.38048 * 120.08894 * 179.97438 * 5 4 3 7 7 C 1.50700 * 119.79993 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46869 * 90.00259 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 C 1.38566 * 120.40415 * 0.26232 * 6 5 4 17 17 C 1.37766 * 120.30842 * 359.48124 * 16 6 5 18 18 C 1.39773 * 119.89595 * 0.50982 * 17 16 6 19 19 C 1.47399 * 120.19246 * 179.72453 * 18 17 16 20 20 O 1.21516 * 120.00155 * 180.02562 * 19 18 17 21 21 O 1.34756 * 120.00326 * 0.02562 * 19 18 17 22 22 H 1.09007 * 109.47313 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47293 * 299.99575 * 1 2 3 24 24 H 1.09006 * 109.47139 * 59.99899 * 1 2 3 25 25 H 1.09001 * 109.46847 * 240.00129 * 2 1 3 26 26 H 1.08995 * 109.47370 * 120.00533 * 2 1 3 27 27 H 1.07997 * 119.95933 * 0.02562 * 5 4 3 28 28 H 1.09004 * 109.47210 * 330.00552 * 7 6 5 29 29 H 1.08994 * 109.47551 * 210.00205 * 7 6 5 30 30 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 31 31 H 1.08007 * 119.84601 * 179.72309 * 16 6 5 32 32 H 1.08002 * 120.05382 * 180.24041 * 17 16 6 33 33 H 0.96695 * 116.99947 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3510 1.5250 0.0005 5 6 4.1989 0.4272 0.0005 6 6 5.5673 0.6097 0.0005 7 6 6.4824 -0.5876 0.0011 8 6 6.7876 -0.9872 -1.4196 9 1 6.3618 -0.4297 -2.2407 10 6 7.6155 -2.0608 -1.6711 11 7 8.1343 -2.7395 -0.6711 12 14 7.9999 -2.5514 -3.4320 13 1 7.2980 -1.6346 -4.3657 14 1 9.4646 -2.4648 -3.6614 15 1 7.5433 -3.9445 -3.6687 16 6 6.1045 1.8870 0.0060 17 6 5.2777 2.9889 0.0008 18 6 3.8903 2.8190 0.0006 19 6 2.9996 3.9935 0.0012 20 8 1.7940 3.8417 0.0015 21 8 3.5223 5.2355 0.0013 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.7881 -0.5715 -0.0003 28 1 5.9959 -1.4166 0.5152 29 1 7.4101 -0.3357 0.5149 30 1 8.7164 -3.4950 -0.8481 31 1 7.1764 2.0192 0.0105 32 1 5.7008 3.9826 0.0012 33 1 2.8984 5.9743 0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396074851.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:25 Heat of formation + Delta-G solvation = -120.692256 kcal Electronic energy + Delta-G solvation = -17800.280136 eV Core-core repulsion = 14790.784761 eV Total energy + Delta-G solvation = -3009.495375 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.34404 -39.10347 -37.32128 -35.72151 -33.59267 -31.91329 -31.27786 -29.31337 -27.75632 -24.31594 -23.84938 -22.00846 -21.33050 -20.45153 -17.85164 -17.45871 -16.52264 -16.42330 -15.95333 -15.37170 -15.18872 -14.66620 -14.13211 -13.71733 -13.26404 -13.14441 -12.76304 -12.47914 -12.47691 -11.84798 -11.59950 -11.48960 -11.24244 -11.14770 -10.96015 -10.68085 -10.58469 -10.47305 -10.20459 -9.66206 -9.55637 -8.54167 -8.31707 -7.81899 -6.16355 -4.21036 1.22090 1.86539 2.98698 3.22938 3.31237 3.31439 3.36206 3.38379 4.21368 4.39392 5.04770 5.05555 5.18855 5.22719 5.34637 5.38771 5.53328 5.61838 5.79458 5.88094 5.90526 6.00810 6.11235 6.37667 6.58008 6.69072 6.83380 6.93403 7.15125 7.37775 7.60344 7.71059 7.79173 8.14811 8.21877 8.84124 9.43722 10.93709 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.022076 B = 0.005953 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.056724 B = 4702.498046 C = 5465.224334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 O -0.291 6.291 4 C 0.192 3.808 5 C -0.229 4.229 6 C 0.046 3.954 7 C 0.040 3.960 8 C -0.515 4.515 9 H 0.060 0.940 10 C 0.060 3.940 11 N -0.892 5.892 12 Si 0.897 3.103 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.283 1.283 16 C -0.174 4.174 17 C -0.028 4.028 18 C -0.200 4.200 19 C 0.529 3.471 20 O -0.511 6.511 21 O -0.520 6.520 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.135 0.865 28 H 0.033 0.967 29 H 0.037 0.963 30 H 0.263 0.737 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.358 8.831 2.190 13.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 O -0.203 6.203 4 C 0.145 3.855 5 C -0.247 4.247 6 C 0.046 3.954 7 C 0.004 3.996 8 C -0.553 4.553 9 H 0.078 0.922 10 C -0.142 4.142 11 N -0.530 5.530 12 Si 0.724 3.276 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.209 1.209 16 C -0.193 4.193 17 C -0.046 4.046 18 C -0.202 4.202 19 C 0.375 3.625 20 O -0.400 6.400 21 O -0.332 6.332 22 H 0.094 0.906 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.152 0.848 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.153 0.847 33 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -9.473 8.437 2.230 12.880 hybrid contribution 0.005 -0.139 -0.973 0.983 sum -9.468 8.298 1.257 12.652 Atomic orbital electron populations 1.21727 0.92945 1.02372 1.03392 1.22865 0.95748 0.82281 1.01937 1.86233 1.18347 1.28674 1.87032 1.18966 0.82672 0.92436 0.91443 1.21153 0.93980 0.97518 1.12095 1.20834 0.93665 0.96868 0.84076 1.18526 0.93447 0.89372 0.98290 1.21013 1.29387 1.13904 0.91002 0.92208 1.25003 0.95596 0.96119 0.97453 1.69960 1.32305 1.20006 1.30740 0.86447 0.78230 0.78451 0.84431 1.19588 1.20790 1.20852 1.21046 1.00363 0.91573 1.06269 1.21198 0.90737 0.99533 0.93146 1.18093 0.92885 0.87834 1.21369 1.20729 0.86829 0.82566 0.72386 1.90887 1.16051 1.86516 1.46565 1.84588 1.45262 1.16654 1.86659 0.90596 0.91717 0.91668 0.91595 0.91823 0.84774 0.94846 0.94518 0.92707 0.85207 0.84734 0.73697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 37.16 0.38 -1.28 16 2 C 0.05 0.66 5.46 37.16 0.20 0.86 16 3 O -0.29 -5.16 8.21 -40.50 -0.33 -5.50 16 4 C 0.19 3.57 6.70 -38.67 -0.26 3.31 16 5 C -0.23 -4.39 8.67 -39.48 -0.34 -4.73 16 6 C 0.05 0.95 5.07 -104.57 -0.53 0.42 16 7 C 0.04 0.98 5.09 -29.03 -0.15 0.83 16 8 C -0.51 -13.78 9.09 -34.44 -0.31 -14.10 16 9 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.89 -25.34 13.29 55.43 0.74 -24.61 16 12 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 13 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 C -0.17 -3.20 9.67 -39.63 -0.38 -3.58 16 17 C -0.03 -0.46 9.61 -39.18 -0.38 -0.84 16 18 C -0.20 -3.54 5.88 -104.86 -0.62 -4.16 16 19 C 0.53 8.77 8.26 34.46 0.28 9.06 16 20 O -0.51 -9.67 15.95 -26.60 -0.42 -10.09 16 21 O -0.52 -6.48 12.68 -40.64 -0.52 -6.99 16 22 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.90 7.66 -51.93 -0.40 0.51 16 26 H 0.06 0.83 7.66 -51.93 -0.40 0.43 16 27 H 0.13 2.44 6.30 -52.49 -0.33 2.11 16 28 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 29 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.13 2.24 8.06 -52.48 -0.42 1.81 16 32 H 0.13 1.84 7.61 -52.49 -0.40 1.44 16 33 H 0.41 3.03 9.11 45.56 0.42 3.45 16 LS Contribution 293.28 15.07 4.42 4.42 Total: -1.00 -31.64 293.28 -6.52 -38.16 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -3.18 Total: 1.45 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -2.20 Total: -12.67 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.74 Total: -24.61 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -1.27 Total: -22.58 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.64 -6.52 -38.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396074851.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.532 kcal (2) G-P(sol) polarization free energy of solvation -31.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds