Wall clock time and date at job start Mon Mar 30 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.46917 * 2 1 4 4 C 1.35639 * 116.99536 * 179.97438 * 3 2 1 5 5 C 1.38708 * 120.15651 * 0.02562 * 4 3 2 6 6 C 1.38048 * 120.08894 * 179.97438 * 5 4 3 7 7 C 1.50700 * 119.79993 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46869 * 90.00259 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 C 1.38566 * 120.40415 * 0.26232 * 6 5 4 17 17 C 1.37766 * 120.30842 * 359.48124 * 16 6 5 18 18 C 1.39773 * 119.89595 * 0.50982 * 17 16 6 19 19 C 1.47399 * 120.19246 * 179.72453 * 18 17 16 20 20 O 1.21516 * 120.00155 * 180.02562 * 19 18 17 21 21 O 1.34756 * 120.00326 * 0.02562 * 19 18 17 22 22 H 1.09007 * 109.47313 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47293 * 299.99575 * 1 2 3 24 24 H 1.09006 * 109.47139 * 59.99899 * 1 2 3 25 25 H 1.09001 * 109.46847 * 240.00129 * 2 1 3 26 26 H 1.08995 * 109.47370 * 120.00533 * 2 1 3 27 27 H 1.07997 * 119.95933 * 0.02562 * 5 4 3 28 28 H 1.09004 * 109.47210 * 330.00552 * 7 6 5 29 29 H 1.08994 * 109.47551 * 210.00205 * 7 6 5 30 30 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 31 31 H 1.08007 * 119.84601 * 179.72309 * 16 6 5 32 32 H 1.08002 * 120.05382 * 180.24041 * 17 16 6 33 33 H 0.96695 * 116.99947 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3510 1.5250 0.0005 5 6 4.1989 0.4272 0.0005 6 6 5.5673 0.6097 0.0005 7 6 6.4824 -0.5876 0.0011 8 6 6.7876 -0.9872 -1.4196 9 1 6.3618 -0.4297 -2.2407 10 6 7.6155 -2.0608 -1.6711 11 7 8.1343 -2.7395 -0.6711 12 14 7.9999 -2.5514 -3.4320 13 1 7.2980 -1.6346 -4.3657 14 1 9.4646 -2.4648 -3.6614 15 1 7.5433 -3.9445 -3.6687 16 6 6.1045 1.8870 0.0060 17 6 5.2777 2.9889 0.0008 18 6 3.8903 2.8190 0.0006 19 6 2.9996 3.9935 0.0012 20 8 1.7940 3.8417 0.0015 21 8 3.5223 5.2355 0.0013 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.7881 -0.5715 -0.0003 28 1 5.9959 -1.4166 0.5152 29 1 7.4101 -0.3357 0.5149 30 1 8.7164 -3.4950 -0.8481 31 1 7.1764 2.0192 0.0105 32 1 5.7008 3.9826 0.0012 33 1 2.8984 5.9743 0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396074851.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:25 Heat of formation + Delta-G solvation = -139.749105 kcal Electronic energy + Delta-G solvation = -17801.106503 eV Core-core repulsion = 14790.784761 eV Total energy + Delta-G solvation = -3010.321742 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.67699 -40.37259 -38.73079 -36.90000 -35.47030 -33.46816 -32.55475 -30.71907 -29.50199 -26.08280 -25.02352 -23.58735 -22.60422 -21.85590 -19.13534 -18.78210 -18.49048 -17.81750 -17.19234 -16.81752 -16.50551 -16.39902 -15.46057 -15.14976 -14.63721 -14.60587 -14.19650 -14.05762 -13.43974 -13.40796 -13.28730 -12.83981 -12.72420 -12.54882 -12.43145 -12.33960 -12.19187 -11.77258 -11.74269 -11.43322 -11.27286 -10.62503 -9.84891 -9.24640 -8.23406 -6.35710 -0.20017 0.44675 1.39914 1.41524 1.53727 1.64208 2.14105 2.16847 2.39113 2.83035 3.09463 3.79518 3.88387 4.01704 4.13236 4.23353 4.24977 4.36081 4.51861 4.55597 4.86797 4.91622 4.94699 5.07187 5.21998 5.23001 5.31950 5.37236 5.66127 5.71272 5.74703 5.89111 6.11180 6.34691 6.76384 7.10769 7.33199 8.86796 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.022076 B = 0.005953 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.056724 B = 4702.498046 C = 5465.224334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.036 3.964 3 O -0.303 6.303 4 C 0.186 3.814 5 C -0.233 4.233 6 C 0.022 3.978 7 C 0.049 3.951 8 C -0.529 4.529 9 H 0.056 0.944 10 C 0.010 3.990 11 N -0.926 5.926 12 Si 0.963 3.037 13 H -0.267 1.267 14 H -0.276 1.276 15 H -0.277 1.277 16 C -0.180 4.180 17 C -0.009 4.009 18 C -0.208 4.208 19 C 0.538 3.462 20 O -0.538 6.538 21 O -0.504 6.504 22 H 0.103 0.897 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.134 0.866 28 H 0.011 0.989 29 H 0.018 0.982 30 H 0.267 0.733 31 H 0.138 0.862 32 H 0.170 0.830 33 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.935 10.216 1.381 14.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.038 4.038 3 O -0.216 6.216 4 C 0.138 3.862 5 C -0.251 4.251 6 C 0.022 3.978 7 C 0.013 3.987 8 C -0.567 4.567 9 H 0.074 0.926 10 C -0.189 4.189 11 N -0.566 5.566 12 Si 0.787 3.213 13 H -0.191 1.191 14 H -0.201 1.201 15 H -0.203 1.203 16 C -0.198 4.198 17 C -0.026 4.026 18 C -0.210 4.210 19 C 0.384 3.616 20 O -0.430 6.430 21 O -0.318 6.318 22 H 0.121 0.879 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.152 0.848 28 H 0.029 0.971 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.156 0.844 32 H 0.187 0.813 33 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -10.058 9.857 1.425 14.155 hybrid contribution 0.128 -0.478 -0.675 0.837 sum -9.931 9.379 0.749 13.680 Atomic orbital electron populations 1.21751 0.90698 1.04126 1.03195 1.23175 0.97543 0.80918 1.02202 1.86237 1.17753 1.30740 1.86821 1.19080 0.83074 0.92667 0.91381 1.21100 0.93580 0.98084 1.12358 1.20565 0.93715 0.96528 0.87011 1.18262 0.93256 0.90383 0.96844 1.21311 1.29273 1.14004 0.92065 0.92617 1.25842 0.95421 0.96097 1.01531 1.70067 1.33056 1.20607 1.32882 0.85427 0.78187 0.78170 0.79473 1.19079 1.20100 1.20269 1.21136 1.01124 0.91186 1.06379 1.21455 0.89920 1.00354 0.90911 1.18456 0.93779 0.88327 1.20459 1.20447 0.86011 0.83396 0.71770 1.90884 1.17085 1.87155 1.47840 1.84513 1.45633 1.15994 1.85650 0.87858 0.91724 0.91982 0.91699 0.91228 0.84796 0.97057 0.96337 0.92446 0.84434 0.81259 0.70790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 10.28 71.98 0.74 -2.24 16 2 C 0.04 1.00 5.46 71.98 0.39 1.39 16 3 O -0.30 -10.61 8.21 -68.61 -0.56 -11.17 16 4 C 0.19 6.80 6.70 22.86 0.15 6.95 16 5 C -0.23 -9.04 8.67 22.34 0.19 -8.85 16 6 C 0.02 0.93 5.07 -19.83 -0.10 0.83 16 7 C 0.05 2.49 5.09 29.10 0.15 2.64 16 8 C -0.53 -28.81 9.09 25.60 0.23 -28.58 16 9 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 10 C 0.01 0.54 5.46 84.66 0.46 1.00 16 11 N -0.93 -53.60 13.29 21.45 0.28 -53.32 16 12 Si 0.96 42.80 29.54 68.60 2.03 44.83 16 13 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 14 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 15 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 16 C -0.18 -6.47 9.67 22.24 0.21 -6.26 16 17 C -0.01 -0.26 9.61 22.53 0.22 -0.05 16 18 C -0.21 -7.02 5.88 -20.02 -0.12 -7.14 16 19 C 0.54 16.50 8.26 70.23 0.58 17.08 16 20 O -0.54 -19.42 15.95 26.79 0.43 -18.99 16 21 O -0.50 -10.67 12.68 -56.66 -0.72 -11.39 16 22 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 23 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.06 1.78 7.66 -2.39 -0.02 1.76 16 26 H 0.07 1.81 7.66 -2.39 -0.02 1.79 16 27 H 0.13 5.04 6.30 -2.91 -0.02 5.02 16 28 H 0.01 0.60 8.08 -2.38 -0.02 0.58 16 29 H 0.02 0.97 8.08 -2.39 -0.02 0.95 16 30 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 31 H 0.14 4.64 8.06 -2.91 -0.02 4.62 16 32 H 0.17 3.96 7.61 -2.91 -0.02 3.93 16 33 H 0.43 4.73 9.11 -74.06 -0.67 4.06 16 Total: -1.00 -67.95 293.28 5.03 -62.92 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.46 Total: 10.33 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 3.12 Total: -23.21 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.28 Total: -53.32 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -0.85 Total: -41.55 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -67.95 5.03 -62.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396074851.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.824 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds