Wall clock time and date at job start Mon Mar 30 2020 06:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42906 * 109.46967 * 2 1 4 4 C 1.35631 * 116.99857 * 180.02562 * 3 2 1 5 5 C 1.38703 * 120.15920 * 89.99740 * 4 3 2 6 6 C 1.50700 * 119.95404 * 359.95279 * 5 4 3 7 7 C 1.50702 * 109.46869 * 84.99972 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48501 * 109.47188 * 90.00793 * 11 9 7 13 13 H 1.48501 * 109.47085 * 210.00372 * 11 9 7 14 14 H 1.48498 * 109.47634 * 330.00608 * 11 9 7 15 15 C 1.38059 * 120.09284 * 180.23394 * 5 4 3 16 16 C 1.38564 * 120.40173 * 359.48439 * 15 5 4 17 17 C 1.37763 * 120.30518 * 0.51742 * 16 15 5 18 18 C 1.39766 * 119.90410 * 359.74406 * 17 16 15 19 19 C 1.47400 * 120.19710 * 179.97438 * 18 17 16 20 20 O 1.21512 * 120.00139 * 180.02562 * 19 18 17 21 21 O 1.34750 * 119.99928 * 0.02562 * 19 18 17 22 22 H 1.08994 * 109.47377 * 60.00072 * 1 2 3 23 23 H 1.08998 * 109.47319 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47177 * 300.00132 * 1 2 3 25 25 H 1.08990 * 109.47059 * 239.99835 * 2 1 3 26 26 H 1.08998 * 109.46924 * 119.99345 * 2 1 3 27 27 H 1.09004 * 109.47210 * 325.00265 * 6 5 4 28 28 H 1.08994 * 109.47551 * 204.99917 * 6 5 4 29 29 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 30 30 H 1.08005 * 119.79736 * 179.72599 * 15 5 4 31 31 H 1.07994 * 119.84862 * 180.23631 * 16 15 5 32 32 H 1.08004 * 120.04669 * 179.76396 * 17 16 15 33 33 H 0.96709 * 117.00089 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3509 1.5251 -0.0005 5 6 4.0413 1.6165 -1.2001 6 6 3.2964 1.5172 -2.5064 7 6 2.7553 2.8730 -2.8804 8 1 2.9333 3.7219 -2.2368 9 6 2.0382 3.0312 -4.0474 10 7 1.8218 1.9977 -4.8313 11 14 1.3741 4.7134 -4.5148 12 1 2.3838 5.4353 -5.3300 13 1 0.1259 4.5513 -5.3028 14 1 1.0845 5.4910 -3.2833 15 6 5.4106 1.7925 -1.1990 16 6 6.1042 1.8899 -0.0034 17 6 5.4351 1.8013 1.1976 18 6 4.0496 1.6177 1.2114 19 6 3.3273 1.5214 2.4927 20 8 2.1228 1.3613 2.5007 21 8 4.0027 1.6110 3.6553 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 2.4711 0.8129 -2.4014 28 1 3.9743 1.1690 -3.2856 29 1 1.3170 2.1089 -5.6522 30 1 5.9439 1.8587 -2.1359 31 1 7.1747 2.0314 -0.0131 32 1 5.9804 1.8739 2.1270 33 1 3.4859 1.5417 4.4698 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396080739.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:27 Heat of formation + Delta-G solvation = -113.318020 kcal Electronic energy + Delta-G solvation = -18412.634127 eV Core-core repulsion = 15403.458523 eV Total energy + Delta-G solvation = -3009.175604 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.32479 -38.84952 -36.88361 -35.71804 -33.51245 -31.49344 -31.36144 -29.44881 -27.01349 -24.30714 -23.47253 -22.45060 -20.92452 -20.51924 -17.66499 -17.32816 -16.47648 -16.27741 -15.77128 -15.37956 -14.69881 -14.52928 -14.14500 -13.96712 -13.42362 -12.64035 -12.40745 -12.25424 -11.83419 -11.71999 -11.59565 -11.33288 -11.24794 -11.11507 -10.82903 -10.69090 -10.45869 -10.19418 -9.73235 -9.48740 -9.11600 -8.48175 -8.39859 -7.93795 -6.02823 -4.04694 1.03475 1.74809 2.91398 3.23653 3.32567 3.38827 3.45012 3.93488 4.38334 4.50618 5.15633 5.31307 5.35624 5.42481 5.56351 5.68537 5.77791 5.82741 5.85867 5.91930 6.19480 6.36378 6.44422 6.55668 6.60761 6.65452 6.81888 6.87858 7.17620 7.49299 7.67117 7.92497 8.14213 8.16667 8.31994 8.97805 9.58062 11.07534 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.021562 B = 0.007609 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.285388 B = 3678.841665 C = 4285.688140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.079 3.921 3 O -0.306 6.306 4 C 0.164 3.836 5 C -0.070 4.070 6 C 0.055 3.945 7 C -0.502 4.502 8 H 0.056 0.944 9 C 0.059 3.941 10 N -0.896 5.896 11 Si 0.894 3.106 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.273 1.273 15 C -0.077 4.077 16 C -0.144 4.144 17 C -0.078 4.078 18 C -0.163 4.163 19 C 0.523 3.477 20 O -0.498 6.498 21 O -0.520 6.520 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.372 -3.769 12.079 13.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.005 3.995 3 O -0.222 6.222 4 C 0.119 3.881 5 C -0.070 4.070 6 C 0.019 3.981 7 C -0.540 4.540 8 H 0.074 0.926 9 C -0.142 4.142 10 N -0.535 5.535 11 Si 0.722 3.278 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.198 1.198 15 C -0.095 4.095 16 C -0.162 4.162 17 C -0.097 4.097 18 C -0.165 4.165 19 C 0.368 3.632 20 O -0.386 6.386 21 O -0.332 6.332 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 5.012 -3.706 11.548 13.123 hybrid contribution -0.563 0.805 0.254 1.015 sum 4.449 -2.901 11.802 12.942 Atomic orbital electron populations 1.21669 0.93554 1.01574 1.03468 1.22462 0.95586 0.82138 0.99322 1.86002 1.16140 1.26306 1.93798 1.18594 0.83726 0.95777 0.89982 1.21090 0.93673 0.95175 0.97063 1.18289 0.94896 0.98426 0.86537 1.20957 1.33664 0.93647 1.05770 0.92565 1.24951 0.96031 0.96858 0.96316 1.69947 1.40803 1.29625 1.13115 0.86542 0.78429 0.84270 0.78543 1.20660 1.21159 1.19755 1.21330 0.93746 0.96184 0.98233 1.21064 0.99949 1.02986 0.92196 1.21097 0.92029 0.97925 0.98613 1.19433 0.94203 1.13277 0.89598 1.20861 0.85493 0.72931 0.83953 1.90914 1.15118 1.44802 1.87743 1.84587 1.45823 1.85866 1.16895 0.91237 0.91546 0.91883 0.93070 0.94136 0.94707 0.95190 0.92900 0.85183 0.85726 0.85139 0.73574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 10.28 37.16 0.38 -2.05 16 2 C 0.08 1.49 5.80 37.16 0.22 1.71 16 3 O -0.31 -6.86 7.75 -40.47 -0.31 -7.17 16 4 C 0.16 3.47 5.71 -38.67 -0.22 3.25 16 5 C -0.07 -1.50 5.08 -104.52 -0.53 -2.03 16 6 C 0.06 1.40 4.82 -29.03 -0.14 1.26 16 7 C -0.50 -14.17 9.09 -34.44 -0.31 -14.48 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.90 -26.31 13.29 55.43 0.74 -25.58 16 11 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 15 C -0.08 -1.38 9.66 -39.53 -0.38 -1.76 16 16 C -0.14 -2.14 10.02 -39.63 -0.40 -2.54 16 17 C -0.08 -1.19 9.61 -39.18 -0.38 -1.57 16 18 C -0.16 -2.96 5.89 -104.86 -0.62 -3.58 16 19 C 0.52 8.79 8.26 34.46 0.28 9.07 16 20 O -0.50 -9.59 14.80 -26.60 -0.39 -9.98 16 21 O -0.52 -6.38 12.68 -40.63 -0.52 -6.90 16 22 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.97 7.17 -51.93 -0.37 0.59 16 26 H 0.04 0.71 7.50 -51.93 -0.39 0.33 16 27 H 0.03 0.94 6.42 -51.93 -0.33 0.60 16 28 H 0.03 0.78 8.05 -51.93 -0.42 0.36 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.13 2.15 8.06 -52.48 -0.42 1.73 16 31 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.13 1.62 7.61 -52.48 -0.40 1.22 16 33 H 0.41 3.01 9.11 45.56 0.42 3.42 16 LS Contribution 291.52 15.07 4.39 4.39 Total: -1.00 -32.78 291.52 -6.46 -39.24 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -3.15 Total: 0.22 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -2.19 Total: -11.11 kcal Atomic # 7 Polarization: -26.31 SS G_CDS: 0.74 Total: -25.58 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -1.22 Total: -24.05 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.78 -6.46 -39.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396080739.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.082 kcal (2) G-P(sol) polarization free energy of solvation -32.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds