Wall clock time and date at job start Mon Mar 30 2020 06:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42906 * 109.46967 * 2 1 4 4 C 1.35631 * 116.99857 * 180.02562 * 3 2 1 5 5 C 1.38703 * 120.15920 * 89.99740 * 4 3 2 6 6 C 1.50700 * 119.95404 * 359.95279 * 5 4 3 7 7 C 1.50702 * 109.46869 * 84.99972 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48501 * 109.47188 * 90.00793 * 11 9 7 13 13 H 1.48501 * 109.47085 * 210.00372 * 11 9 7 14 14 H 1.48498 * 109.47634 * 330.00608 * 11 9 7 15 15 C 1.38059 * 120.09284 * 180.23394 * 5 4 3 16 16 C 1.38564 * 120.40173 * 359.48439 * 15 5 4 17 17 C 1.37763 * 120.30518 * 0.51742 * 16 15 5 18 18 C 1.39766 * 119.90410 * 359.74406 * 17 16 15 19 19 C 1.47400 * 120.19710 * 179.97438 * 18 17 16 20 20 O 1.21512 * 120.00139 * 180.02562 * 19 18 17 21 21 O 1.34750 * 119.99928 * 0.02562 * 19 18 17 22 22 H 1.08994 * 109.47377 * 60.00072 * 1 2 3 23 23 H 1.08998 * 109.47319 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47177 * 300.00132 * 1 2 3 25 25 H 1.08990 * 109.47059 * 239.99835 * 2 1 3 26 26 H 1.08998 * 109.46924 * 119.99345 * 2 1 3 27 27 H 1.09004 * 109.47210 * 325.00265 * 6 5 4 28 28 H 1.08994 * 109.47551 * 204.99917 * 6 5 4 29 29 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 30 30 H 1.08005 * 119.79736 * 179.72599 * 15 5 4 31 31 H 1.07994 * 119.84862 * 180.23631 * 16 15 5 32 32 H 1.08004 * 120.04669 * 179.76396 * 17 16 15 33 33 H 0.96709 * 117.00089 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3509 1.5251 -0.0005 5 6 4.0413 1.6165 -1.2001 6 6 3.2964 1.5172 -2.5064 7 6 2.7553 2.8730 -2.8804 8 1 2.9333 3.7219 -2.2368 9 6 2.0382 3.0312 -4.0474 10 7 1.8218 1.9977 -4.8313 11 14 1.3741 4.7134 -4.5148 12 1 2.3838 5.4353 -5.3300 13 1 0.1259 4.5513 -5.3028 14 1 1.0845 5.4910 -3.2833 15 6 5.4106 1.7925 -1.1990 16 6 6.1042 1.8899 -0.0034 17 6 5.4351 1.8013 1.1976 18 6 4.0496 1.6177 1.2114 19 6 3.3273 1.5214 2.4927 20 8 2.1228 1.3613 2.5007 21 8 4.0027 1.6110 3.6553 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 2.4711 0.8129 -2.4014 28 1 3.9743 1.1690 -3.2856 29 1 1.3170 2.1089 -5.6522 30 1 5.9439 1.8587 -2.1359 31 1 7.1747 2.0314 -0.0131 32 1 5.9804 1.8739 2.1270 33 1 3.4859 1.5417 4.4698 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396080739.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:27 Heat of formation + Delta-G solvation = -134.268752 kcal Electronic energy + Delta-G solvation = -18413.542619 eV Core-core repulsion = 15403.458523 eV Total energy + Delta-G solvation = -3010.084096 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.66740 -40.19649 -38.32932 -36.90202 -35.48838 -33.24814 -32.76967 -30.91959 -28.84186 -25.63147 -25.37221 -23.93307 -22.34510 -21.93143 -18.92775 -18.78535 -18.45003 -17.76289 -17.24471 -16.66442 -16.54404 -16.02910 -15.56001 -15.37680 -14.82235 -14.41486 -14.07639 -13.64324 -13.37585 -13.27335 -13.12254 -12.93763 -12.71297 -12.56206 -12.55811 -12.40004 -12.21965 -11.58701 -11.56711 -11.48380 -10.69116 -10.55409 -9.88191 -9.44937 -8.19859 -6.29899 -0.32270 0.36907 1.36847 1.38794 1.49827 1.60553 2.07936 2.39398 2.57205 2.99778 3.11996 3.88400 4.05184 4.12692 4.18812 4.26788 4.36368 4.43111 4.48056 4.59380 4.87944 4.97382 5.00283 5.19727 5.20545 5.25878 5.35744 5.47798 5.60917 5.74155 5.82988 5.84421 6.17674 6.68290 6.79240 7.04189 7.36693 8.89920 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.021562 B = 0.007609 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.285388 B = 3678.841665 C = 4285.688140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.077 3.923 3 O -0.336 6.336 4 C 0.136 3.864 5 C -0.106 4.106 6 C 0.067 3.933 7 C -0.518 4.518 8 H 0.045 0.955 9 C 0.009 3.991 10 N -0.927 5.927 11 Si 0.958 3.042 12 H -0.266 1.266 13 H -0.279 1.279 14 H -0.274 1.274 15 C -0.079 4.079 16 C -0.126 4.126 17 C -0.057 4.057 18 C -0.176 4.176 19 C 0.530 3.470 20 O -0.530 6.530 21 O -0.500 6.500 22 H 0.046 0.954 23 H 0.100 0.900 24 H 0.062 0.938 25 H 0.038 0.962 26 H 0.052 0.948 27 H 0.005 0.995 28 H 0.011 0.989 29 H 0.265 0.735 30 H 0.138 0.862 31 H 0.174 0.826 32 H 0.171 0.829 33 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.221 -3.003 14.002 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.003 3.997 3 O -0.254 6.254 4 C 0.091 3.909 5 C -0.107 4.107 6 C 0.030 3.970 7 C -0.556 4.556 8 H 0.064 0.936 9 C -0.189 4.189 10 N -0.568 5.568 11 Si 0.783 3.217 12 H -0.191 1.191 13 H -0.205 1.205 14 H -0.199 1.199 15 C -0.097 4.097 16 C -0.143 4.143 17 C -0.075 4.075 18 C -0.178 4.178 19 C 0.375 3.625 20 O -0.421 6.421 21 O -0.314 6.314 22 H 0.065 0.935 23 H 0.119 0.881 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.023 0.977 28 H 0.030 0.970 29 H 0.074 0.926 30 H 0.156 0.844 31 H 0.191 0.809 32 H 0.189 0.811 33 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 6.884 -2.941 13.504 15.440 hybrid contribution -1.032 0.527 -0.222 1.180 sum 5.851 -2.414 13.282 14.713 Atomic orbital electron populations 1.21670 0.92227 1.03443 1.02218 1.22578 0.96693 0.81308 0.99114 1.85951 1.17500 1.27880 1.94032 1.18825 0.83449 0.97435 0.91152 1.20813 0.95275 0.99182 0.95401 1.17943 0.93934 0.96435 0.88641 1.21241 1.33963 0.94605 1.05789 0.93620 1.25787 0.96259 1.00611 0.96288 1.70056 1.41517 1.31618 1.13569 0.85552 0.78189 0.79794 0.78186 1.19136 1.20460 1.19889 1.21518 0.92291 0.95577 1.00306 1.21512 1.02027 1.00316 0.90469 1.21596 0.90693 0.94766 1.00413 1.19615 0.95565 1.13348 0.89272 1.20640 0.84899 0.72264 0.84710 1.90906 1.16529 1.46360 1.88342 1.84501 1.45308 1.84849 1.16735 0.93477 0.88148 0.91907 0.94396 0.92966 0.97655 0.97027 0.92642 0.84437 0.80894 0.81143 0.70747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 10.28 71.98 0.74 -4.05 16 2 C 0.08 3.03 5.80 71.98 0.42 3.45 16 3 O -0.34 -15.74 7.75 -68.51 -0.53 -16.28 16 4 C 0.14 5.85 5.71 22.86 0.13 5.98 16 5 C -0.11 -4.71 5.08 -19.80 -0.10 -4.81 16 6 C 0.07 3.63 4.82 29.10 0.14 3.77 16 7 C -0.52 -30.40 9.09 25.60 0.23 -30.17 16 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 9 C 0.01 0.50 5.46 84.66 0.46 0.96 16 10 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 11 Si 0.96 45.72 29.54 68.60 2.03 47.75 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 14 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 15 C -0.08 -2.74 9.66 22.31 0.22 -2.52 16 16 C -0.13 -3.23 10.02 22.24 0.22 -3.01 16 17 C -0.06 -1.49 9.61 22.53 0.22 -1.27 16 18 C -0.18 -6.09 5.89 -20.02 -0.12 -6.21 16 19 C 0.53 16.75 8.26 70.23 0.58 17.33 16 20 O -0.53 -20.12 14.80 26.80 0.40 -19.72 16 21 O -0.50 -10.34 12.68 -56.61 -0.72 -11.06 16 22 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.10 2.69 8.14 -2.39 -0.02 2.68 16 24 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.04 1.55 7.17 -2.39 -0.02 1.53 16 26 H 0.05 1.89 7.50 -2.39 -0.02 1.87 16 27 H 0.01 0.31 6.42 -2.38 -0.02 0.29 16 28 H 0.01 0.64 8.05 -2.39 -0.02 0.62 16 29 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 30 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 31 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 32 H 0.17 3.16 7.61 -2.91 -0.02 3.13 16 33 H 0.43 4.71 9.11 -74.05 -0.67 4.03 16 Total: -1.00 -74.50 291.52 5.06 -69.44 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 0.46 Total: 6.42 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 3.14 Total: -20.55 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.28 Total: -56.00 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -0.85 Total: -47.06 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -74.50 5.06 -69.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396080739.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.829 kcal (2) G-P(sol) polarization free energy of solvation -74.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds