Wall clock time and date at job start Mon Mar 30 2020 06:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38236 * 119.99751 * 2 1 4 4 C 1.38232 * 119.99843 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.00224 * 179.97438 * 4 3 2 6 6 C 1.38236 * 120.00167 * 359.97438 * 4 3 2 7 7 C 1.50703 * 120.00062 * 179.97438 * 6 4 3 8 8 S 1.81399 * 109.47147 * 90.00039 * 7 6 4 9 9 C 1.81394 * 102.99894 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46854 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00482 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99886 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99878 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99954 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46902 * 60.00102 * 14 12 10 16 16 H 1.48502 * 109.46926 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47281 * 300.00149 * 14 12 10 18 18 C 1.38237 * 119.99938 * 0.27223 * 6 4 3 19 19 C 1.50700 * 120.00162 * 179.72779 * 18 6 4 20 20 C 1.38232 * 119.99969 * 179.97438 * 2 1 3 21 21 H 1.09002 * 109.46972 * 90.00284 * 1 2 3 22 22 H 1.09000 * 109.46874 * 209.99878 * 1 2 3 23 23 H 1.08999 * 109.46989 * 329.99974 * 1 2 3 24 24 H 1.07997 * 120.00219 * 359.97438 * 3 2 1 25 25 H 1.08998 * 109.47110 * 269.98347 * 5 4 3 26 26 H 1.09004 * 109.46699 * 29.98388 * 5 4 3 27 27 H 1.08995 * 109.46880 * 149.97753 * 5 4 3 28 28 H 1.09001 * 109.46980 * 330.00027 * 7 6 4 29 29 H 1.09004 * 109.47113 * 210.00008 * 7 6 4 30 30 H 1.09002 * 109.47501 * 299.99574 * 9 8 7 31 31 H 1.08998 * 109.47135 * 60.00434 * 9 8 7 32 32 H 0.96999 * 119.99860 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.47014 * 89.99702 * 19 18 6 34 34 H 1.09002 * 109.47076 * 210.00198 * 19 18 6 35 35 H 1.09004 * 109.46914 * 330.00169 * 19 18 6 36 36 H 1.07999 * 120.00384 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.3340 2.5023 0.0000 6 6 4.2717 0.0001 0.0016 7 6 5.7787 0.0001 0.0016 8 16 6.3834 0.0017 1.7119 9 6 8.1858 0.0008 1.5074 10 6 8.8450 0.0026 2.8625 11 1 8.2402 0.0037 3.7573 12 6 10.2204 0.0017 2.9601 13 7 10.9569 -0.0002 1.8705 14 14 11.0375 0.0046 4.6399 15 1 10.6237 -1.2059 5.3938 16 1 12.5131 0.0038 4.4725 17 1 10.6255 1.2190 5.3887 18 6 3.5805 -1.1971 -0.0035 19 6 4.3341 -2.5022 -0.0086 20 6 2.1982 -1.1971 0.0005 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6581 2.1325 -0.0004 25 1 4.5163 2.8161 -1.0278 26 1 3.7445 3.2624 0.5128 27 1 5.2860 2.3724 0.5146 28 1 6.1420 0.8897 -0.5130 29 1 6.1421 -0.8903 -0.5115 30 1 8.4886 -0.8899 0.9568 31 1 8.4892 0.8901 0.9550 32 1 11.9244 -0.0004 1.9392 33 1 4.5154 -2.8210 1.0179 34 1 3.7452 -3.2597 -0.5258 35 1 5.2867 -2.3697 -0.5215 36 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413012085.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:56 Heat of formation + Delta-G solvation = -9.060488 kcal Electronic energy + Delta-G solvation = -15505.296058 eV Core-core repulsion = 13079.227365 eV Total energy + Delta-G solvation = -2426.068692 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.109 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.69136 -34.28578 -33.41298 -33.12984 -29.31040 -28.48188 -27.76369 -26.56149 -24.68866 -22.92048 -20.60758 -19.88572 -16.55956 -16.12629 -15.71419 -15.18763 -14.66330 -14.19639 -13.94546 -13.34811 -13.20647 -12.97805 -12.81168 -12.74035 -12.49896 -12.41434 -12.32375 -12.23900 -11.81408 -11.36635 -11.10742 -10.85727 -10.85231 -10.68926 -10.61403 -10.07418 -9.57165 -8.83066 -8.59816 -8.36854 -8.09502 -6.64142 -6.18060 -4.22159 1.36689 1.55200 2.80538 3.28934 3.31893 3.36523 3.89634 3.96139 4.36764 4.84557 4.86099 4.98918 5.11785 5.18912 5.21568 5.41070 5.49997 5.52276 5.63399 5.68483 5.76747 5.81800 5.84340 5.86541 6.04916 6.08014 6.16490 6.39863 6.48166 6.68916 6.69530 6.90576 7.11403 7.12874 7.20651 7.76309 8.03197 8.79531 9.40710 10.93181 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.038481 B = 0.004588 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.465918 B = 6101.936216 C = 6320.195614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.087 4.087 3 C -0.130 4.130 4 C -0.061 4.061 5 C -0.123 4.123 6 C -0.064 4.064 7 C -0.058 4.058 8 S -0.291 6.291 9 C 0.087 3.913 10 C -0.511 4.511 11 H 0.066 0.934 12 C 0.065 3.935 13 N -0.894 5.894 14 Si 0.906 3.094 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.062 4.062 19 C -0.117 4.117 20 C -0.130 4.130 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.118 0.882 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.266 0.734 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.702 -0.039 -6.189 17.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.088 4.088 3 C -0.148 4.148 4 C -0.063 4.063 5 C -0.180 4.180 6 C -0.065 4.065 7 C -0.205 4.205 8 S -0.063 6.063 9 C -0.060 4.060 10 C -0.551 4.551 11 H 0.084 0.916 12 C -0.138 4.138 13 N -0.532 5.532 14 Si 0.733 3.267 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.064 4.064 19 C -0.174 4.174 20 C -0.148 4.148 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.136 0.864 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.048 -0.038 -5.317 17.858 hybrid contribution 1.275 0.006 -0.311 1.313 sum -15.772 -0.032 -5.629 16.747 Atomic orbital electron populations 1.20743 0.91549 1.02486 1.01909 1.19799 0.95669 0.93180 1.00148 1.20789 0.93297 0.97317 1.03420 1.19718 0.93466 0.94879 0.98214 1.20913 1.01353 0.93661 1.02033 1.19089 0.93581 0.92483 1.01352 1.22278 0.93998 1.04810 0.99370 1.86837 1.13195 1.97861 1.08358 1.21060 0.83836 0.99959 1.01127 1.20643 0.91076 1.52239 0.91108 0.91566 1.24960 0.96805 0.94680 0.97382 1.69945 1.05738 1.49716 1.27795 0.86423 0.77953 0.78973 0.83372 1.19908 1.21068 1.19910 1.19717 0.93487 0.94888 0.98270 1.20859 0.99846 0.93514 1.03134 1.20776 0.93264 0.97322 1.03442 0.91529 0.91780 0.91781 0.86420 0.91514 0.91707 0.89881 0.90080 0.89867 0.94735 0.94734 0.92479 0.90301 0.92093 0.91174 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 36.01 0.36 -0.65 16 2 C -0.09 -1.09 5.88 -104.62 -0.62 -1.71 16 3 C -0.13 -1.73 9.36 -39.58 -0.37 -2.10 16 4 C -0.06 -0.91 5.88 -104.62 -0.62 -1.53 16 5 C -0.12 -1.68 9.19 36.01 0.33 -1.35 16 6 C -0.06 -1.04 5.14 -104.62 -0.54 -1.58 16 7 C -0.06 -1.02 4.93 36.01 0.18 -0.85 16 8 S -0.29 -6.43 21.28 -107.50 -2.29 -8.71 16 9 C 0.09 2.28 5.70 36.01 0.21 2.48 16 10 C -0.51 -14.54 9.13 -34.44 -0.31 -14.85 16 11 H 0.07 1.89 7.71 -52.49 -0.40 1.48 16 12 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 13 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 14 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 C -0.06 -0.92 5.88 -104.62 -0.62 -1.54 16 19 C -0.12 -1.59 9.60 36.01 0.35 -1.24 16 20 C -0.13 -1.72 9.36 -39.58 -0.37 -2.09 16 21 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 23 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 24 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 27 H 0.08 1.31 6.37 -51.93 -0.33 0.98 16 28 H 0.08 1.39 6.70 -51.92 -0.35 1.04 16 29 H 0.08 1.43 5.94 -51.92 -0.31 1.12 16 30 H 0.03 0.94 8.14 -51.92 -0.42 0.51 16 31 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.07 0.98 5.94 -51.93 -0.31 0.67 16 36 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 311.08 15.07 4.69 4.69 Total: -1.00 -29.86 311.08 -9.47 -39.33 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.47 Total: -1.17 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: -2.12 Total: -25.25 kcal Atomic # 7 Polarization: -26.10 SS G_CDS: 0.74 Total: -25.37 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -6.43 SS G_CDS: -2.29 Total: -8.71 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.86 -9.47 -39.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413012085.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.271 kcal (2) G-P(sol) polarization free energy of solvation -29.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds