Wall clock time and date at job start Mon Mar 30 2020 06:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38236 * 119.99751 * 2 1 4 4 C 1.38232 * 119.99843 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.00224 * 179.97438 * 4 3 2 6 6 C 1.38236 * 120.00167 * 359.97438 * 4 3 2 7 7 C 1.50703 * 120.00062 * 179.97438 * 6 4 3 8 8 S 1.81399 * 109.47147 * 90.00039 * 7 6 4 9 9 C 1.81394 * 102.99894 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46854 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00482 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99886 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99878 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99954 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46902 * 60.00102 * 14 12 10 16 16 H 1.48502 * 109.46926 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47281 * 300.00149 * 14 12 10 18 18 C 1.38237 * 119.99938 * 0.27223 * 6 4 3 19 19 C 1.50700 * 120.00162 * 179.72779 * 18 6 4 20 20 C 1.38232 * 119.99969 * 179.97438 * 2 1 3 21 21 H 1.09002 * 109.46972 * 90.00284 * 1 2 3 22 22 H 1.09000 * 109.46874 * 209.99878 * 1 2 3 23 23 H 1.08999 * 109.46989 * 329.99974 * 1 2 3 24 24 H 1.07997 * 120.00219 * 359.97438 * 3 2 1 25 25 H 1.08998 * 109.47110 * 269.98347 * 5 4 3 26 26 H 1.09004 * 109.46699 * 29.98388 * 5 4 3 27 27 H 1.08995 * 109.46880 * 149.97753 * 5 4 3 28 28 H 1.09001 * 109.46980 * 330.00027 * 7 6 4 29 29 H 1.09004 * 109.47113 * 210.00008 * 7 6 4 30 30 H 1.09002 * 109.47501 * 299.99574 * 9 8 7 31 31 H 1.08998 * 109.47135 * 60.00434 * 9 8 7 32 32 H 0.96999 * 119.99860 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.47014 * 89.99702 * 19 18 6 34 34 H 1.09002 * 109.47076 * 210.00198 * 19 18 6 35 35 H 1.09004 * 109.46914 * 330.00169 * 19 18 6 36 36 H 1.07999 * 120.00384 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.3340 2.5023 0.0000 6 6 4.2717 0.0001 0.0016 7 6 5.7787 0.0001 0.0016 8 16 6.3834 0.0017 1.7119 9 6 8.1858 0.0008 1.5074 10 6 8.8450 0.0026 2.8625 11 1 8.2402 0.0037 3.7573 12 6 10.2204 0.0017 2.9601 13 7 10.9569 -0.0002 1.8705 14 14 11.0375 0.0046 4.6399 15 1 10.6237 -1.2059 5.3938 16 1 12.5131 0.0038 4.4725 17 1 10.6255 1.2190 5.3887 18 6 3.5805 -1.1971 -0.0035 19 6 4.3341 -2.5022 -0.0086 20 6 2.1982 -1.1971 0.0005 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6581 2.1325 -0.0004 25 1 4.5163 2.8161 -1.0278 26 1 3.7445 3.2624 0.5128 27 1 5.2860 2.3724 0.5146 28 1 6.1420 0.8897 -0.5130 29 1 6.1421 -0.8903 -0.5115 30 1 8.4886 -0.8899 0.9568 31 1 8.4892 0.8901 0.9550 32 1 11.9244 -0.0004 1.9392 33 1 4.5154 -2.8210 1.0179 34 1 3.7452 -3.2597 -0.5258 35 1 5.2867 -2.3697 -0.5215 36 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413012085.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:55 Heat of formation + Delta-G solvation = -23.067892 kcal Electronic energy + Delta-G solvation = -15505.903464 eV Core-core repulsion = 13079.227365 eV Total energy + Delta-G solvation = -2426.676099 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.109 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.76610 -35.34248 -35.28879 -34.49157 -30.74817 -30.34197 -28.78888 -27.59937 -25.95246 -24.92309 -21.68142 -20.94532 -18.66827 -17.30832 -17.25505 -16.57444 -16.44952 -15.34077 -15.14767 -14.72830 -14.51302 -14.42200 -14.08031 -13.92575 -13.87682 -13.76522 -13.72704 -13.46396 -12.92927 -12.71693 -12.65208 -12.46423 -12.26771 -11.90045 -11.88659 -11.75984 -11.49381 -10.75170 -10.70725 -9.43117 -9.24999 -8.45596 -8.33799 -6.47568 0.16610 0.48451 1.25949 1.39574 1.42300 1.51699 2.03921 2.36082 2.85196 3.00272 3.71708 3.79461 3.98223 4.02189 4.07119 4.39285 4.47664 4.57681 4.62299 4.71324 4.76209 4.79514 4.82967 4.90228 4.93027 4.93278 5.00747 5.04757 5.14366 5.37940 5.40471 5.55634 5.61410 5.69132 5.78534 5.87968 6.16256 6.59468 7.20384 8.77853 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.038481 B = 0.004588 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.465918 B = 6101.936216 C = 6320.195614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.082 4.082 3 C -0.137 4.137 4 C -0.072 4.072 5 C -0.121 4.121 6 C -0.095 4.095 7 C -0.039 4.039 8 S -0.298 6.298 9 C 0.090 3.910 10 C -0.537 4.537 11 H 0.061 0.939 12 C 0.015 3.985 13 N -0.925 5.925 14 Si 0.976 3.024 15 H -0.266 1.266 16 H -0.275 1.275 17 H -0.266 1.266 18 C -0.073 4.073 19 C -0.116 4.116 20 C -0.137 4.137 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.142 0.858 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.013 0.987 31 H 0.012 0.988 32 H 0.271 0.729 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.900 -0.031 -5.872 19.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.082 4.082 3 C -0.155 4.155 4 C -0.074 4.074 5 C -0.178 4.178 6 C -0.097 4.097 7 C -0.186 4.186 8 S -0.068 6.068 9 C -0.057 4.057 10 C -0.576 4.576 11 H 0.079 0.921 12 C -0.185 4.185 13 N -0.564 5.564 14 Si 0.799 3.201 15 H -0.191 1.191 16 H -0.200 1.200 17 H -0.191 1.191 18 C -0.075 4.075 19 C -0.172 4.172 20 C -0.155 4.155 21 H 0.101 0.899 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.160 0.840 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.031 0.969 31 H 0.031 0.969 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -19.247 -0.030 -5.000 19.886 hybrid contribution 1.792 0.008 -0.514 1.864 sum -17.456 -0.023 -5.514 18.306 Atomic orbital electron populations 1.20819 0.88793 1.03671 1.03248 1.20275 0.97692 0.92567 0.97711 1.21105 0.92602 0.98860 1.02911 1.19951 0.94568 0.94700 0.98175 1.20900 1.00160 0.93900 1.02811 1.19069 0.92182 0.93909 1.04501 1.22239 0.95666 1.04938 0.95799 1.86629 1.09448 1.97850 1.12909 1.20742 0.87389 0.97734 0.99876 1.20955 0.91935 1.53010 0.91662 0.92115 1.25917 0.97316 0.93724 1.01584 1.70054 1.06226 1.50019 1.30117 0.85335 0.77140 0.79340 0.78283 1.19100 1.19970 1.19114 1.19950 0.94585 0.94700 0.98222 1.20856 0.99784 0.93964 1.02618 1.21103 0.92584 0.98867 1.02900 0.89947 0.90640 0.90651 0.84048 0.90102 0.89964 0.92603 0.89999 0.89699 0.96919 0.96926 0.92047 0.91419 0.89384 0.92298 0.84009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 10.01 71.24 0.71 -0.84 16 2 C -0.08 -1.79 5.88 -19.87 -0.12 -1.91 16 3 C -0.14 -3.29 9.36 22.27 0.21 -3.08 16 4 C -0.07 -2.08 5.88 -19.86 -0.12 -2.20 16 5 C -0.12 -3.23 9.19 71.24 0.65 -2.58 16 6 C -0.10 -3.07 5.14 -19.86 -0.10 -3.17 16 7 C -0.04 -1.45 4.93 71.24 0.35 -1.09 16 8 S -0.30 -13.59 21.28 -56.49 -1.20 -14.80 16 9 C 0.09 4.95 5.70 71.24 0.41 5.35 16 10 C -0.54 -31.46 9.13 25.60 0.23 -31.22 16 11 H 0.06 3.54 7.71 -2.91 -0.02 3.52 16 12 C 0.02 0.88 5.46 84.66 0.46 1.34 16 13 N -0.93 -55.23 13.29 21.45 0.28 -54.95 16 14 Si 0.98 44.28 29.54 68.60 2.03 46.30 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 C -0.07 -2.10 5.88 -19.86 -0.12 -2.21 16 19 C -0.12 -3.08 9.60 71.24 0.68 -2.39 16 20 C -0.14 -3.27 9.36 22.27 0.21 -3.07 16 21 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.07 0.93 8.09 -2.39 -0.02 0.92 16 23 H 0.07 0.93 8.09 -2.39 -0.02 0.92 16 24 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 25 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.08 1.85 8.09 -2.39 -0.02 1.83 16 27 H 0.05 1.79 6.37 -2.39 -0.02 1.78 16 28 H 0.08 2.93 6.70 -2.39 -0.02 2.91 16 29 H 0.08 3.03 5.94 -2.39 -0.01 3.02 16 30 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.09 1.80 8.09 -2.39 -0.02 1.78 16 35 H 0.06 1.67 5.94 -2.39 -0.01 1.65 16 36 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -65.35 311.08 5.63 -59.72 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.05 Total: 10.79 kcal Atomic # 6 Polarization: -50.54 SS G_CDS: 3.47 Total: -47.07 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.28 Total: -54.95 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -13.59 SS G_CDS: -1.20 Total: -14.80 kcal Total: -65.35 5.63 -59.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413012085.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.653 kcal (2) G-P(sol) polarization free energy of solvation -65.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds