Wall clock time and date at job start Mon Mar 30 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47261 * 2 1 4 4 H 1.08999 * 109.47028 * 55.00078 * 3 2 1 5 5 C 1.50698 * 109.47382 * 175.00260 * 3 2 1 6 6 H 1.07998 * 120.00502 * 119.99438 * 5 3 2 7 7 C 1.37879 * 119.99954 * 300.00002 * 5 3 2 8 8 N 1.31517 * 119.99656 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00160 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47093 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46982 * 120.00006 * 9 7 5 12 12 H 1.48500 * 109.47218 * 239.99738 * 9 7 5 13 13 O 1.42905 * 109.46800 * 295.00025 * 3 2 1 14 14 C 1.34998 * 116.99552 * 90.00209 * 13 3 2 15 15 O 1.21711 * 120.00596 * 359.97438 * 14 13 3 16 16 C 1.41299 * 119.99571 * 180.02562 * 14 13 3 17 17 C 1.35754 * 119.99860 * 186.38074 * 16 14 13 18 18 C 1.41531 * 120.00145 * 9.01955 * 17 16 14 19 19 C 1.37994 * 126.11055 * 220.52232 * 18 17 16 20 20 C 1.40281 * 106.52936 * 179.97438 * 19 18 17 21 21 C 1.35182 * 107.20968 * 359.97438 * 20 19 18 22 22 O 1.34013 * 109.03935 * 359.75871 * 21 20 19 23 23 H 1.08993 * 109.47448 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47207 * 59.99508 * 1 2 3 25 25 H 1.09002 * 109.46812 * 300.00446 * 1 2 3 26 26 H 1.08998 * 109.47532 * 119.99794 * 2 1 3 27 27 H 1.08995 * 109.47216 * 240.00106 * 2 1 3 28 28 H 0.97000 * 119.99522 * 180.02562 * 8 7 5 29 29 H 1.07997 * 120.00108 * 6.37772 * 16 14 13 30 30 H 1.07998 * 119.99654 * 189.01958 * 17 16 14 31 31 H 1.08006 * 126.73664 * 359.97438 * 19 18 17 32 32 H 1.08002 * 126.39498 * 179.97438 * 20 19 18 33 33 H 1.07998 * 125.47999 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1434 0.8785 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8801 1.3810 10 1 6.5988 1.5453 0.1935 11 1 6.4000 1.6157 2.6090 12 1 6.4962 -0.5190 1.4626 13 8 1.6620 2.0814 -1.2211 14 6 0.4720 2.7188 -1.2363 15 8 -0.2250 2.7305 -0.2387 16 6 0.0353 3.3715 -2.4110 17 6 -1.0968 4.1205 -2.3904 18 6 -1.7343 4.4057 -1.1594 19 6 -3.0950 4.4099 -0.9301 20 6 -3.2710 4.7430 0.4212 21 6 -2.0410 4.9243 0.9519 22 8 -1.1197 4.7154 0.0014 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.8294 -0.0612 2.9497 29 1 0.6020 3.2746 -3.3252 30 1 -1.5108 4.4987 -3.3133 31 1 -3.8721 4.1983 -1.6497 32 1 -4.2133 4.8371 0.9406 33 1 -1.8340 5.1900 1.9780 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588558069.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:53 Heat of formation + Delta-G solvation = -51.856573 kcal Electronic energy + Delta-G solvation = -18467.815280 eV Core-core repulsion = 15461.304844 eV Total energy + Delta-G solvation = -3006.510435 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.17081 -39.64374 -36.19096 -33.77888 -33.40511 -32.60298 -31.28709 -28.81926 -27.22050 -24.50443 -22.93502 -21.44728 -21.16717 -19.84319 -18.98518 -17.70562 -16.68989 -16.36115 -15.75341 -15.25255 -15.06399 -14.54418 -13.97139 -13.57876 -12.97601 -12.75098 -12.63959 -12.36048 -12.08885 -12.08040 -11.42635 -11.25392 -11.13341 -10.94113 -10.60194 -10.23899 -9.94469 -9.77365 -9.63558 -9.52205 -9.25480 -8.69763 -8.39577 -7.79512 -6.14245 -4.20791 0.72834 2.32968 2.86797 3.25418 3.32275 3.37534 3.42343 3.76237 3.96745 4.39858 4.92227 5.16814 5.18116 5.22297 5.38244 5.65956 5.87016 5.99289 6.12780 6.24386 6.28637 6.34947 6.45821 6.54835 6.72952 6.93802 7.03198 7.23559 7.32410 7.42821 7.67100 7.80645 8.02053 8.22519 8.71406 8.98081 9.44655 10.92644 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.032260 B = 0.005873 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.747649 B = 4766.725522 C = 4837.658906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 C 0.218 3.782 4 H 0.045 0.955 5 C -0.518 4.518 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.909 3.091 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.347 6.347 14 C 0.472 3.528 15 O -0.497 6.497 16 C -0.166 4.166 17 C -0.011 4.011 18 C 0.010 3.990 19 C -0.185 4.185 20 C -0.229 4.229 21 C -0.013 4.013 22 O -0.131 6.131 23 H 0.031 0.969 24 H 0.031 0.969 25 H 0.052 0.948 26 H 0.106 0.894 27 H 0.040 0.960 28 H 0.264 0.736 29 H 0.145 0.855 30 H 0.157 0.843 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.438 7.167 -6.535 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.165 3.835 4 H 0.063 0.937 5 C -0.556 4.556 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.736 3.264 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.263 6.263 14 C 0.318 3.682 15 O -0.388 6.388 16 C -0.185 4.185 17 C -0.030 4.030 18 C -0.041 4.041 19 C -0.204 4.204 20 C -0.249 4.249 21 C -0.084 4.084 22 O -0.024 6.024 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.125 0.875 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.163 0.837 30 H 0.175 0.825 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -10.245 7.052 -6.008 13.812 hybrid contribution 0.662 -0.264 0.338 0.788 sum -9.583 6.788 -5.670 13.041 Atomic orbital electron populations 1.21836 0.98413 0.98777 1.00699 1.22033 0.92563 0.99640 1.03172 1.20214 0.94948 0.88792 0.79582 0.93721 1.21106 0.89793 1.38616 1.06111 0.91403 1.24889 0.99134 0.94848 0.95130 1.69911 1.35196 1.38051 1.09479 0.86258 0.84099 0.77838 0.78178 1.19500 1.20807 1.20744 1.86203 1.33865 1.62725 1.43530 1.19801 0.81568 0.78433 0.88391 1.90867 1.54511 1.58178 1.35291 1.21827 0.97863 0.99712 0.99128 1.20633 0.93375 0.94854 0.94106 1.19607 0.90915 1.07146 0.86408 1.22071 0.94522 1.06497 0.97337 1.21567 0.98358 1.09504 0.95429 1.24160 0.87073 1.03105 0.94052 1.84314 1.36037 1.65115 1.16927 0.95033 0.94989 0.92923 0.87545 0.94153 0.92557 0.83724 0.82523 0.83621 0.83815 0.78638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.55 37.16 0.32 -2.87 16 2 C -0.14 -3.48 5.48 -26.73 -0.15 -3.63 16 3 C 0.22 5.94 2.22 -27.88 -0.06 5.87 16 4 H 0.05 1.35 7.11 -51.93 -0.37 0.98 16 5 C -0.52 -14.81 8.89 -34.44 -0.31 -15.12 16 6 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.52 11.29 55.43 0.63 -24.89 16 9 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 O -0.35 -8.50 9.68 -41.31 -0.40 -8.90 16 14 C 0.47 10.12 5.90 31.90 0.19 10.30 16 15 O -0.50 -11.53 9.55 -27.69 -0.26 -11.80 16 16 C -0.17 -2.62 9.99 -39.31 -0.39 -3.01 16 17 C -0.01 -0.15 9.95 -39.22 -0.39 -0.54 16 18 C 0.01 0.15 5.31 -38.42 -0.20 -0.05 16 19 C -0.19 -2.55 10.90 -38.90 -0.42 -2.98 16 20 C -0.23 -3.10 10.87 -39.90 -0.43 -3.53 16 21 C -0.01 -0.20 12.06 29.64 0.36 0.16 16 22 O -0.13 -2.38 7.84 -20.14 -0.16 -2.54 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.03 0.70 6.05 -51.93 -0.31 0.39 16 25 H 0.05 1.26 7.75 -51.93 -0.40 0.86 16 26 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 27 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.20 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 284.19 15.07 4.28 4.28 Total: -1.00 -32.59 284.19 -6.42 -39.01 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -3.90 Total: 2.27 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -1.59 Total: -13.75 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.63 Total: -24.89 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.82 Total: -23.24 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.59 -6.42 -39.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588558069.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.842 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds