Wall clock time and date at job start Mon Mar 30 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47261 * 2 1 4 4 H 1.08999 * 109.47028 * 55.00078 * 3 2 1 5 5 C 1.50698 * 109.47382 * 175.00260 * 3 2 1 6 6 H 1.07998 * 120.00502 * 119.99438 * 5 3 2 7 7 C 1.37879 * 119.99954 * 300.00002 * 5 3 2 8 8 N 1.31517 * 119.99656 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00160 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47093 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46982 * 120.00006 * 9 7 5 12 12 H 1.48500 * 109.47218 * 239.99738 * 9 7 5 13 13 O 1.42905 * 109.46800 * 295.00025 * 3 2 1 14 14 C 1.34998 * 116.99552 * 90.00209 * 13 3 2 15 15 O 1.21711 * 120.00596 * 359.97438 * 14 13 3 16 16 C 1.41299 * 119.99571 * 180.02562 * 14 13 3 17 17 C 1.35754 * 119.99860 * 186.38074 * 16 14 13 18 18 C 1.41531 * 120.00145 * 9.01955 * 17 16 14 19 19 C 1.37994 * 126.11055 * 220.52232 * 18 17 16 20 20 C 1.40281 * 106.52936 * 179.97438 * 19 18 17 21 21 C 1.35182 * 107.20968 * 359.97438 * 20 19 18 22 22 O 1.34013 * 109.03935 * 359.75871 * 21 20 19 23 23 H 1.08993 * 109.47448 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47207 * 59.99508 * 1 2 3 25 25 H 1.09002 * 109.46812 * 300.00446 * 1 2 3 26 26 H 1.08998 * 109.47532 * 119.99794 * 2 1 3 27 27 H 1.08995 * 109.47216 * 240.00106 * 2 1 3 28 28 H 0.97000 * 119.99522 * 180.02562 * 8 7 5 29 29 H 1.07997 * 120.00108 * 6.37772 * 16 14 13 30 30 H 1.07998 * 119.99654 * 189.01958 * 17 16 14 31 31 H 1.08006 * 126.73664 * 359.97438 * 19 18 17 32 32 H 1.08002 * 126.39498 * 179.97438 * 20 19 18 33 33 H 1.07998 * 125.47999 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1434 0.8785 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8801 1.3810 10 1 6.5988 1.5453 0.1935 11 1 6.4000 1.6157 2.6090 12 1 6.4962 -0.5190 1.4626 13 8 1.6620 2.0814 -1.2211 14 6 0.4720 2.7188 -1.2363 15 8 -0.2250 2.7305 -0.2387 16 6 0.0353 3.3715 -2.4110 17 6 -1.0968 4.1205 -2.3904 18 6 -1.7343 4.4057 -1.1594 19 6 -3.0950 4.4099 -0.9301 20 6 -3.2710 4.7430 0.4212 21 6 -2.0410 4.9243 0.9519 22 8 -1.1197 4.7154 0.0014 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.8294 -0.0612 2.9497 29 1 0.6020 3.2746 -3.3252 30 1 -1.5108 4.4987 -3.3133 31 1 -3.8721 4.1983 -1.6497 32 1 -4.2133 4.8371 0.9406 33 1 -1.8340 5.1900 1.9780 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588558069.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:53 Heat of formation + Delta-G solvation = -70.891171 kcal Electronic energy + Delta-G solvation = -18468.640682 eV Core-core repulsion = 15461.304844 eV Total energy + Delta-G solvation = -3007.335838 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.33433 -41.34726 -37.93828 -35.44971 -35.05670 -33.75858 -33.31179 -30.11940 -29.16323 -26.04160 -24.79572 -22.67237 -22.52830 -21.64303 -20.42233 -19.17434 -18.63166 -17.93968 -17.16255 -16.91529 -16.69913 -16.23800 -15.25385 -15.04300 -14.70017 -14.44146 -13.90633 -13.69901 -13.50578 -13.39009 -13.31884 -13.11330 -13.01746 -12.82199 -12.55260 -12.13677 -11.76977 -11.42528 -11.24179 -11.06846 -10.77914 -10.67448 -10.48014 -8.95087 -8.27595 -6.44378 -0.46810 1.14536 1.39979 1.40708 1.54829 1.75662 2.20152 2.24796 2.46560 2.57781 3.01782 3.85541 4.13227 4.16300 4.23410 4.36086 4.38760 4.50665 4.56962 4.81698 4.82730 4.86668 5.02992 5.05764 5.14875 5.22346 5.31944 5.43748 5.52453 5.68088 5.70595 6.01372 6.19988 6.30876 6.62111 7.09882 7.30405 8.79544 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.032260 B = 0.005873 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.747649 B = 4766.725522 C = 4837.658906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.001 0.999 5 C -0.549 4.549 6 H 0.063 0.937 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.981 3.019 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.270 1.270 13 O -0.362 6.362 14 C 0.462 3.538 15 O -0.525 6.525 16 C -0.207 4.207 17 C 0.034 3.966 18 C -0.035 4.035 19 C -0.171 4.171 20 C -0.229 4.229 21 C -0.037 4.037 22 O -0.170 6.170 23 H 0.059 0.941 24 H 0.036 0.964 25 H 0.032 0.968 26 H 0.083 0.917 27 H 0.043 0.957 28 H 0.270 0.730 29 H 0.175 0.825 30 H 0.216 0.784 31 H 0.181 0.819 32 H 0.174 0.826 33 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.425 7.605 -7.960 15.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.168 4.168 3 C 0.171 3.829 4 H 0.019 0.981 5 C -0.587 4.587 6 H 0.081 0.919 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.804 3.196 10 H -0.189 1.189 11 H -0.201 1.201 12 H -0.195 1.195 13 O -0.279 6.279 14 C 0.311 3.689 15 O -0.417 6.417 16 C -0.225 4.225 17 C 0.016 3.984 18 C -0.084 4.084 19 C -0.190 4.190 20 C -0.248 4.248 21 C -0.106 4.106 22 O -0.065 6.065 23 H 0.078 0.922 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.192 0.808 30 H 0.233 0.767 31 H 0.198 0.802 32 H 0.191 0.809 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -11.258 7.497 -7.448 15.441 hybrid contribution 0.765 -0.290 0.848 1.178 sum -10.492 7.207 -6.600 14.339 Atomic orbital electron populations 1.21651 0.96293 1.00244 0.99887 1.21873 0.94404 0.98439 1.02039 1.19839 0.94370 0.89219 0.79449 0.98141 1.21396 0.90724 1.39750 1.06811 0.91925 1.25823 1.04303 0.93872 0.94346 1.70034 1.37350 1.38095 1.09880 0.85167 0.77689 0.78383 0.78359 1.18850 1.20099 1.19514 1.86180 1.36108 1.63679 1.41931 1.20810 0.80168 0.77915 0.90005 1.90849 1.54880 1.59244 1.36775 1.21869 1.00277 1.02542 0.97837 1.21404 0.90877 0.90893 0.95221 1.20353 0.92214 1.09060 0.86796 1.22583 0.94369 1.04051 0.98021 1.22017 0.98895 1.08212 0.95654 1.24800 0.87632 1.03471 0.94742 1.84285 1.37815 1.66115 1.18290 0.92244 0.94514 0.94923 0.89851 0.93814 0.92111 0.80760 0.76714 0.80176 0.80885 0.76947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.55 71.98 0.62 -5.09 16 2 C -0.13 -6.83 5.48 30.60 0.17 -6.66 16 3 C 0.23 12.86 2.22 29.85 0.07 12.92 16 4 H 0.00 0.05 7.11 -2.39 -0.02 0.04 16 5 C -0.55 -32.47 8.89 25.60 0.23 -32.24 16 6 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 7 C 0.02 0.91 5.29 84.65 0.45 1.36 16 8 N -0.92 -53.96 11.29 21.45 0.24 -53.72 16 9 Si 0.98 44.09 29.54 68.60 2.03 46.12 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 O -0.36 -18.42 9.68 -59.16 -0.57 -18.99 16 14 C 0.46 20.30 5.90 68.57 0.40 20.71 16 15 O -0.52 -25.25 9.55 27.05 0.26 -25.00 16 16 C -0.21 -6.28 9.99 22.45 0.22 -6.05 16 17 C 0.03 0.80 9.95 22.51 0.22 1.02 16 18 C -0.03 -1.04 5.31 23.02 0.12 -0.92 16 19 C -0.17 -4.23 10.90 22.71 0.25 -3.98 16 20 C -0.23 -5.72 10.87 22.06 0.24 -5.48 16 21 C -0.04 -1.10 12.06 67.12 0.81 -0.29 16 22 O -0.17 -6.28 7.84 17.50 0.14 -6.15 16 23 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 24 H 0.04 1.63 6.05 -2.39 -0.01 1.61 16 25 H 0.03 1.60 7.75 -2.39 -0.02 1.58 16 26 H 0.08 4.78 5.95 -2.39 -0.01 4.77 16 27 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 29 H 0.17 4.07 8.06 -2.91 -0.02 4.04 16 30 H 0.22 2.41 8.06 -2.91 -0.02 2.38 16 31 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 32 H 0.17 3.16 8.06 -2.91 -0.02 3.13 16 33 H 0.21 5.04 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -74.66 284.19 7.00 -67.66 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 1.11 Total: 14.76 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 3.80 Total: -24.69 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.24 Total: -53.72 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -0.18 Total: -50.13 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -74.66 7.00 -67.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588558069.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.231 kcal (2) G-P(sol) polarization free energy of solvation -74.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds