Wall clock time and date at job start Mon Mar 30 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99788 * 2 1 4 4 H 1.48503 * 109.47035 * 269.99835 * 3 2 1 5 5 H 1.48496 * 109.47136 * 29.99792 * 3 2 1 6 6 H 1.48503 * 109.46960 * 150.00404 * 3 2 1 7 7 C 1.37880 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00025 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99753 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46827 * 179.97438 * 9 7 2 11 11 S 1.81393 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.81399 * 103.00238 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.47007 * 179.97438 * 12 11 10 14 14 H 1.08999 * 110.67401 * 54.30079 * 13 12 11 15 15 C 1.54891 * 110.75450 * 177.53167 * 13 12 11 16 16 C 1.54262 * 104.19667 * 156.25529 * 15 13 12 17 17 C 1.53872 * 106.59937 * 336.39044 * 16 15 13 18 18 F 1.39898 * 110.03458 * 119.28180 * 17 16 15 19 19 F 1.39893 * 110.03371 * 240.66425 * 17 16 15 20 20 C 1.54467 * 106.68356 * 0.15921 * 17 16 15 21 21 H 0.96997 * 119.99910 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46758 * 60.00594 * 9 7 2 23 23 H 1.08997 * 109.47547 * 299.99923 * 9 7 2 24 24 H 1.08997 * 109.46719 * 60.00070 * 10 9 7 25 25 H 1.09001 * 109.47499 * 300.00542 * 10 9 7 26 26 H 1.08993 * 109.47659 * 59.99879 * 12 11 10 27 27 H 1.09000 * 109.46960 * 299.99674 * 12 11 10 28 28 H 1.09007 * 110.48374 * 274.93828 * 15 13 12 29 29 H 1.09006 * 110.48706 * 37.44126 * 15 13 12 30 30 H 1.09004 * 110.03346 * 95.67283 * 16 15 13 31 31 H 1.09002 * 110.03481 * 217.05599 * 16 15 13 32 32 H 1.09004 * 110.40184 * 264.75331 * 20 17 16 33 33 H 1.08999 * 110.66361 * 142.05232 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0014 11 16 5.8355 -2.6365 0.0014 12 6 6.2436 -4.4040 0.0024 13 6 7.7639 -4.5764 0.0019 14 1 8.2137 -4.0279 0.8295 15 6 8.1463 -6.0760 0.0650 16 6 9.5631 -6.1311 -0.5428 17 6 9.7034 -4.8917 -1.4438 18 9 10.7503 -4.0836 -0.9877 19 9 9.9422 -5.2843 -2.7651 20 6 8.3674 -4.1219 -1.3502 21 1 -0.4850 0.8400 -0.0004 22 1 3.8751 -0.6796 0.8895 23 1 3.8746 -0.6807 -0.8905 24 1 3.6579 -3.1512 -0.8879 25 1 3.6586 -3.1494 0.8920 26 1 5.8248 -4.8741 -0.8873 27 1 5.8247 -4.8731 0.8926 28 1 8.1607 -6.4228 1.0983 29 1 7.4516 -6.6721 -0.5268 30 1 10.3108 -6.1030 0.2498 31 1 9.6805 -7.0390 -1.1345 32 1 7.7101 -4.3999 -2.1741 33 1 8.5428 -3.0461 -1.3473 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601061199.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:12 Heat of formation + Delta-G solvation = -133.675467 kcal Electronic energy + Delta-G solvation = -15836.205690 eV Core-core repulsion = 12850.503757 eV Total energy + Delta-G solvation = -2985.701933 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.090 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.07514 -47.14910 -38.02286 -33.73375 -31.26694 -31.23577 -28.86281 -25.90857 -25.06820 -21.23606 -21.12699 -20.36126 -17.79947 -17.03431 -16.91467 -16.41549 -15.58986 -14.95787 -14.61316 -14.38123 -14.11207 -14.03414 -13.50108 -13.47727 -13.32267 -12.85396 -12.73885 -12.07896 -11.93723 -11.76118 -11.60024 -11.39853 -11.17021 -11.01948 -10.82557 -10.32248 -10.05823 -9.82006 -9.56958 -9.20711 -8.61451 -7.31074 -6.12423 -4.12606 2.01227 3.06817 3.28899 3.36309 3.41549 3.51965 3.69394 3.91813 4.10345 4.39925 4.67674 4.75119 4.84811 4.93106 5.05986 5.20274 5.21743 5.28701 5.44065 5.53210 5.57816 5.69868 5.82037 5.84644 5.97168 5.98625 6.50987 7.08971 7.21251 7.64141 8.40884 8.89013 9.48356 11.00331 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.045582 B = 0.003933 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.134225 B = 7117.660495 C = 7408.896939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.522 4.522 8 H 0.073 0.927 9 C 0.003 3.997 10 C -0.050 4.050 11 S -0.294 6.294 12 C -0.079 4.079 13 C -0.073 4.073 14 H 0.094 0.906 15 C -0.114 4.114 16 C -0.162 4.162 17 C 0.278 3.722 18 F -0.200 7.200 19 F -0.201 7.201 20 C -0.154 4.154 21 H 0.265 0.735 22 H 0.026 0.974 23 H 0.021 0.979 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.636 -12.696 -0.560 22.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.198 4.198 11 S -0.066 6.066 12 C -0.227 4.227 13 C -0.092 4.092 14 H 0.113 0.887 15 C -0.153 4.153 16 C -0.200 4.200 17 C 0.242 3.758 18 F -0.181 7.181 19 F -0.182 7.182 20 C -0.192 4.192 21 H 0.075 0.925 22 H 0.044 0.956 23 H 0.040 0.960 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 19.206 -11.707 -0.584 22.501 hybrid contribution -0.375 -0.087 -0.160 0.417 sum 18.831 -11.795 -0.744 22.233 Atomic orbital electron populations 1.69896 1.06288 1.27145 1.50462 1.24962 0.94736 0.99181 0.94196 0.86785 0.80475 0.83421 0.78773 1.20066 1.21177 1.18782 1.20963 0.88502 0.94745 1.51957 0.90854 1.19366 0.97106 0.89605 0.97556 1.23464 0.87828 1.04522 1.03943 1.86860 1.12922 1.08734 1.98106 1.23270 0.97508 0.96933 1.05014 1.21845 0.93790 0.96045 0.97512 0.88732 1.22425 0.94681 0.96082 1.02096 1.23154 1.00146 0.96756 0.99973 1.21957 0.85960 0.90261 0.77602 1.93016 1.61117 1.75217 1.88712 1.93005 1.95448 1.91554 1.38220 1.23484 0.93466 1.02247 1.00011 0.92511 0.95578 0.96022 0.90808 0.90781 0.90091 0.89813 0.89909 0.90212 0.88732 0.88730 0.88090 0.88107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.00 0.06 4.05 -27.88 -0.11 -0.05 16 10 C -0.05 -0.97 5.88 37.16 0.22 -0.75 16 11 S -0.29 -4.85 21.37 -107.50 -2.30 -7.15 16 12 C -0.08 -0.91 5.42 37.16 0.20 -0.71 16 13 C -0.07 -0.70 2.89 -88.63 -0.26 -0.96 16 14 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.11 -0.81 6.28 -25.07 -0.16 -0.97 16 16 C -0.16 -1.21 6.50 -25.62 -0.17 -1.38 16 17 C 0.28 2.86 2.58 -25.51 -0.07 2.80 16 18 F -0.20 -2.40 17.03 2.25 0.04 -2.36 16 19 F -0.20 -2.36 17.05 2.25 0.04 -2.32 16 20 C -0.15 -1.61 5.48 -24.97 -0.14 -1.74 16 21 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 22 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 23 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 24 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 26 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16 27 H 0.08 0.91 8.14 -51.92 -0.42 0.48 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.52 8.05 -51.93 -0.42 0.10 16 30 H 0.09 0.63 8.02 -51.93 -0.42 0.22 16 31 H 0.09 0.61 8.02 -51.93 -0.42 0.19 16 32 H 0.10 1.03 7.95 -51.93 -0.41 0.61 16 33 H 0.10 1.17 8.11 -51.93 -0.42 0.74 16 LS Contribution 291.80 15.07 4.40 4.40 Total: -1.00 -30.28 291.80 -7.59 -37.87 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -4.97 Total: -4.01 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -0.91 Total: -16.81 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.77 Total: -26.62 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.08 Total: -4.68 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Atomic # 16 Polarization: -4.85 SS G_CDS: -2.30 Total: -7.15 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.28 -7.59 -37.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601061199.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.802 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds