Wall clock time and date at job start Mon Mar 30 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99788 * 2 1 4 4 H 1.48503 * 109.47035 * 269.99835 * 3 2 1 5 5 H 1.48496 * 109.47136 * 29.99792 * 3 2 1 6 6 H 1.48503 * 109.46960 * 150.00404 * 3 2 1 7 7 C 1.37880 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00025 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99753 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46827 * 179.97438 * 9 7 2 11 11 S 1.81393 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.81399 * 103.00238 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.47007 * 179.97438 * 12 11 10 14 14 H 1.08999 * 110.67401 * 54.30079 * 13 12 11 15 15 C 1.54891 * 110.75450 * 177.53167 * 13 12 11 16 16 C 1.54262 * 104.19667 * 156.25529 * 15 13 12 17 17 C 1.53872 * 106.59937 * 336.39044 * 16 15 13 18 18 F 1.39898 * 110.03458 * 119.28180 * 17 16 15 19 19 F 1.39893 * 110.03371 * 240.66425 * 17 16 15 20 20 C 1.54467 * 106.68356 * 0.15921 * 17 16 15 21 21 H 0.96997 * 119.99910 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46758 * 60.00594 * 9 7 2 23 23 H 1.08997 * 109.47547 * 299.99923 * 9 7 2 24 24 H 1.08997 * 109.46719 * 60.00070 * 10 9 7 25 25 H 1.09001 * 109.47499 * 300.00542 * 10 9 7 26 26 H 1.08993 * 109.47659 * 59.99879 * 12 11 10 27 27 H 1.09000 * 109.46960 * 299.99674 * 12 11 10 28 28 H 1.09007 * 110.48374 * 274.93828 * 15 13 12 29 29 H 1.09006 * 110.48706 * 37.44126 * 15 13 12 30 30 H 1.09004 * 110.03346 * 95.67283 * 16 15 13 31 31 H 1.09002 * 110.03481 * 217.05599 * 16 15 13 32 32 H 1.09004 * 110.40184 * 264.75331 * 20 17 16 33 33 H 1.08999 * 110.66361 * 142.05232 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0014 11 16 5.8355 -2.6365 0.0014 12 6 6.2436 -4.4040 0.0024 13 6 7.7639 -4.5764 0.0019 14 1 8.2137 -4.0279 0.8295 15 6 8.1463 -6.0760 0.0650 16 6 9.5631 -6.1311 -0.5428 17 6 9.7034 -4.8917 -1.4438 18 9 10.7503 -4.0836 -0.9877 19 9 9.9422 -5.2843 -2.7651 20 6 8.3674 -4.1219 -1.3502 21 1 -0.4850 0.8400 -0.0004 22 1 3.8751 -0.6796 0.8895 23 1 3.8746 -0.6807 -0.8905 24 1 3.6579 -3.1512 -0.8879 25 1 3.6586 -3.1494 0.8920 26 1 5.8248 -4.8741 -0.8873 27 1 5.8247 -4.8731 0.8926 28 1 8.1607 -6.4228 1.0983 29 1 7.4516 -6.6721 -0.5268 30 1 10.3108 -6.1030 0.2498 31 1 9.6805 -7.0390 -1.1345 32 1 7.7101 -4.3999 -2.1741 33 1 8.5428 -3.0461 -1.3473 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601061199.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:12 Heat of formation + Delta-G solvation = -149.765407 kcal Electronic energy + Delta-G solvation = -15836.903402 eV Core-core repulsion = 12850.503757 eV Total energy + Delta-G solvation = -2986.399645 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.92549 -48.01731 -38.75438 -35.75682 -33.28206 -32.02551 -29.60977 -27.64785 -26.10841 -22.81377 -21.95804 -21.35801 -19.14191 -18.62664 -17.73265 -17.31095 -16.79438 -16.42257 -15.87412 -15.56970 -15.36128 -14.94111 -14.76559 -14.61549 -14.39158 -14.30694 -13.87481 -13.57903 -13.09515 -12.82556 -12.64900 -12.55756 -12.31963 -12.11065 -11.87276 -11.74166 -11.67363 -11.54241 -11.28597 -10.81718 -10.77722 -8.62187 -8.34272 -6.39638 0.77447 1.34711 1.36224 1.48440 1.75481 2.32813 2.76808 2.96238 3.01120 3.18013 3.37203 3.91330 3.99681 4.10767 4.22505 4.26922 4.28377 4.36222 4.46780 4.56232 4.69518 4.79158 4.80249 4.90465 5.02608 5.15547 5.19038 5.28445 5.30931 5.53304 6.18437 6.66303 7.25238 8.81809 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.045582 B = 0.003933 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.134225 B = 7117.660495 C = 7408.896939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.013 3.987 3 Si 0.945 3.055 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.252 1.252 7 C -0.532 4.532 8 H 0.040 0.960 9 C 0.007 3.993 10 C -0.047 4.047 11 S -0.313 6.313 12 C -0.065 4.065 13 C -0.069 4.069 14 H 0.091 0.909 15 C -0.103 4.103 16 C -0.155 4.155 17 C 0.270 3.730 18 F -0.213 7.213 19 F -0.212 7.212 20 C -0.157 4.157 21 H 0.269 0.731 22 H 0.023 0.977 23 H 0.021 0.979 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.520 -13.589 -0.209 24.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.185 4.185 3 Si 0.769 3.231 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.176 1.176 7 C -0.572 4.572 8 H 0.058 0.942 9 C -0.032 4.032 10 C -0.195 4.195 11 S -0.086 6.086 12 C -0.213 4.213 13 C -0.089 4.089 14 H 0.109 0.891 15 C -0.143 4.143 16 C -0.193 4.193 17 C 0.234 3.766 18 F -0.194 7.194 19 F -0.193 7.193 20 C -0.195 4.195 21 H 0.078 0.922 22 H 0.041 0.959 23 H 0.039 0.961 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 21.094 -12.608 -0.232 24.576 hybrid contribution -0.933 0.087 -0.293 0.982 sum 20.161 -12.521 -0.526 23.739 Atomic orbital electron populations 1.70032 1.08099 1.28364 1.52001 1.25889 0.95559 1.03208 0.93846 0.85726 0.79439 0.78644 0.79328 1.19094 1.20485 1.17556 1.21300 0.91011 0.93580 1.51266 0.94154 1.19211 0.94273 0.92572 0.97104 1.23140 0.90763 1.01607 1.04018 1.86857 1.09437 1.14062 1.98197 1.23408 0.98912 0.92609 1.06340 1.21825 0.92092 0.98193 0.96767 0.89101 1.22426 0.94455 0.93771 1.03599 1.23170 1.00691 0.95649 0.99781 1.22300 0.85249 0.91376 0.77675 1.92989 1.61726 1.75849 1.88810 1.92984 1.95473 1.91625 1.39186 1.23476 0.93932 1.01338 1.00719 0.92222 0.95908 0.96111 0.90816 0.90723 0.88956 0.88320 0.87925 0.89030 0.87657 0.87269 0.87900 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.69 13.96 21.45 0.30 -58.39 16 2 C 0.01 0.76 5.47 84.66 0.46 1.22 16 3 Si 0.95 44.57 27.47 68.60 1.88 46.45 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 7 C -0.53 -30.48 9.66 25.60 0.25 -30.23 16 8 H 0.04 2.50 7.99 -2.91 -0.02 2.47 16 9 C 0.01 0.33 4.05 29.85 0.12 0.45 16 10 C -0.05 -1.82 5.88 71.98 0.42 -1.40 16 11 S -0.31 -9.88 21.37 -56.49 -1.21 -11.09 16 12 C -0.06 -1.32 5.42 71.98 0.39 -0.93 16 13 C -0.07 -1.15 2.89 -9.50 -0.03 -1.18 16 14 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 15 C -0.10 -1.07 6.28 31.67 0.20 -0.87 16 16 C -0.15 -1.82 6.50 31.32 0.20 -1.62 16 17 C 0.27 5.08 2.58 31.39 0.08 5.16 16 18 F -0.21 -4.87 17.03 44.97 0.77 -4.10 16 19 F -0.21 -4.66 17.05 44.97 0.77 -3.89 16 20 C -0.16 -3.02 5.48 31.74 0.17 -2.84 16 21 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 22 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 23 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 24 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 25 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 26 H 0.09 1.74 8.05 -2.39 -0.02 1.72 16 27 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.09 0.79 8.05 -2.38 -0.02 0.77 16 30 H 0.10 1.05 8.02 -2.39 -0.02 1.03 16 31 H 0.11 1.02 8.02 -2.39 -0.02 1.00 16 32 H 0.10 1.93 7.95 -2.38 -0.02 1.91 16 33 H 0.08 1.88 8.11 -2.39 -0.02 1.87 16 Total: -1.00 -65.97 291.80 5.81 -60.16 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: 1.02 Total: 3.10 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 2.27 Total: -32.25 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.30 Total: -58.39 kcal Atomic # 9 Polarization: -9.53 SS G_CDS: 1.53 Total: -8.00 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Atomic # 16 Polarization: -9.88 SS G_CDS: -1.21 Total: -11.09 kcal Total: -65.97 5.81 -60.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601061199.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.602 kcal (2) G-P(sol) polarization free energy of solvation -65.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds