Wall clock time and date at job start Mon Mar 30 2020 06:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38261 * 119.98578 * 2 1 4 4 C 1.38227 * 120.04923 * 179.74861 * 3 2 1 5 5 C 1.38218 * 120.02568 * 0.55664 * 4 3 2 6 6 C 1.50702 * 120.01385 * 179.72357 * 5 4 3 7 7 H 1.08996 * 110.35196 * 216.86878 * 6 5 4 8 8 C 1.54944 * 110.31104 * 94.72312 * 6 5 4 9 9 C 1.55304 * 100.97800 * 204.65934 * 8 6 5 10 10 C 1.54384 * 102.25492 * 34.11596 * 9 8 6 11 11 H 1.08998 * 109.82952 * 98.24246 * 10 9 8 12 12 C 1.50696 * 109.83063 * 219.12939 * 10 9 8 13 13 H 1.08001 * 119.99842 * 359.97438 * 12 10 9 14 14 C 1.37880 * 120.00295 * 179.97438 * 12 10 9 15 15 N 1.31515 * 119.99486 * 359.97438 * 14 12 10 16 16 Si 1.86791 * 120.00035 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47444 * 59.99907 * 16 14 12 18 18 H 1.48501 * 109.47219 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47571 * 299.99473 * 16 14 12 20 20 O 1.43240 * 107.58460 * 338.63785 * 10 9 8 21 21 C 1.38440 * 119.97305 * 359.44073 * 5 4 3 22 22 F 1.35099 * 120.02636 * 180.25430 * 21 5 4 23 23 C 1.38179 * 119.98764 * 180.02562 * 2 1 3 24 24 H 1.09006 * 109.46582 * 269.97144 * 1 2 3 25 25 H 1.08991 * 109.47482 * 29.97265 * 1 2 3 26 26 H 1.08997 * 109.47186 * 149.98000 * 1 2 3 27 27 H 1.08003 * 119.97708 * 0.04606 * 3 2 1 28 28 H 1.08004 * 119.98520 * 180.27742 * 4 3 2 29 29 H 1.09002 * 111.12633 * 86.72064 * 8 6 5 30 30 H 1.08995 * 111.12590 * 322.60066 * 8 6 5 31 31 H 1.09006 * 110.84773 * 152.30089 * 9 8 6 32 32 H 1.08991 * 110.85201 * 275.92112 * 9 8 6 33 33 H 0.96997 * 119.99641 * 179.97438 * 15 14 12 34 34 H 1.08000 * 120.00908 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5803 1.1991 0.0052 5 6 4.2733 0.0032 -0.0011 6 6 5.7803 0.0052 -0.0017 7 1 6.1603 -0.8087 -0.6191 8 6 6.3189 -0.1211 1.4456 9 6 7.7200 0.5323 1.2979 10 6 7.4600 1.6307 0.2447 11 1 7.3111 2.5901 0.7400 12 6 8.6302 1.7197 -0.7007 13 1 9.4790 1.0644 -0.5725 14 6 8.6172 2.6377 -1.7294 15 7 7.5832 3.4353 -1.8858 16 14 10.0680 2.7485 -2.9007 17 1 10.2515 1.4441 -3.5863 18 1 9.8091 3.8059 -3.9107 19 1 11.2966 3.0833 -2.1368 20 8 6.2782 1.2662 -0.4780 21 6 3.5825 -1.1965 -0.0011 22 9 4.2587 -2.3660 -0.0021 23 6 2.1977 -1.1968 -0.0005 24 1 -0.3633 -0.0005 1.0278 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6574 2.1325 0.0008 28 1 4.1190 2.1352 0.0098 29 1 6.4022 -1.1662 1.7440 30 1 5.6973 0.4365 2.1461 31 1 8.0457 0.9694 2.2419 32 1 8.4488 -0.1910 0.9323 33 1 7.5742 4.0814 -2.6092 34 1 1.6576 -2.1321 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686650599.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:14 Heat of formation + Delta-G solvation = -78.227487 kcal Electronic energy + Delta-G solvation = -18163.366687 eV Core-core repulsion = 15168.085513 eV Total energy + Delta-G solvation = -2995.281175 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.59477 -39.24933 -37.77092 -33.24332 -32.19196 -30.95405 -30.23450 -28.97325 -26.48136 -24.11818 -22.52724 -21.72517 -20.30477 -20.01228 -16.87435 -16.54658 -16.39069 -15.79475 -15.33810 -14.79270 -14.52184 -14.01624 -13.69801 -13.58579 -13.27455 -13.09784 -12.65249 -12.21029 -12.03864 -11.85048 -11.71253 -11.44284 -11.01330 -10.87244 -10.60313 -10.43561 -10.38986 -10.16160 -9.85138 -9.21583 -8.59776 -8.52300 -8.26053 -7.83241 -5.98180 -4.11714 1.41004 1.50798 3.33256 3.37948 3.40353 3.82627 4.44124 4.47835 4.79163 4.91864 5.06711 5.24662 5.36010 5.41313 5.48736 5.54301 5.55931 5.70072 5.76407 5.84736 6.12215 6.18761 6.25311 6.33154 6.40495 6.52523 6.60220 6.65784 6.75424 6.81440 6.92633 7.20677 7.63225 7.89390 8.28527 8.56944 9.03032 9.59918 11.08647 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.029800 B = 0.005963 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.356095 B = 4694.193694 C = 5098.541952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.073 4.073 3 C -0.135 4.135 4 C -0.059 4.059 5 C -0.108 4.108 6 C 0.115 3.885 7 H 0.066 0.934 8 C -0.145 4.145 9 C -0.144 4.144 10 C 0.206 3.794 11 H 0.040 0.960 12 C -0.546 4.546 13 H 0.059 0.941 14 C 0.080 3.920 15 N -0.864 5.864 16 Si 0.890 3.110 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 O -0.350 6.350 21 C 0.099 3.901 22 F -0.141 7.141 23 C -0.162 4.162 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.125 0.875 28 H 0.146 0.854 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.261 0.739 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.576 -6.310 5.245 14.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.074 4.074 3 C -0.153 4.153 4 C -0.077 4.077 5 C -0.109 4.109 6 C 0.056 3.944 7 H 0.083 0.917 8 C -0.183 4.183 9 C -0.182 4.182 10 C 0.151 3.849 11 H 0.058 0.942 12 C -0.583 4.583 13 H 0.077 0.923 14 C -0.126 4.126 15 N -0.500 5.500 16 Si 0.717 3.283 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 O -0.269 6.269 21 C 0.080 3.920 22 F -0.120 7.120 23 C -0.181 4.181 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.143 0.857 28 H 0.163 0.837 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.716 -6.073 4.978 14.104 hybrid contribution 1.018 -0.326 -0.610 1.231 sum -10.698 -6.398 4.368 13.208 Atomic orbital electron populations 1.20755 0.90961 1.02749 1.02222 1.19661 0.95955 0.92408 0.99342 1.21120 0.94289 0.97466 1.02410 1.21113 0.93285 0.98607 0.94668 1.20225 0.97080 0.91912 1.01655 1.21430 0.87484 0.91542 0.93962 0.91668 1.23215 0.97865 1.00608 0.96631 1.23215 0.95310 0.99581 1.00061 1.20315 0.83721 0.92081 0.88805 0.94185 1.21359 1.02282 1.20000 1.14664 0.92307 1.25044 0.95511 0.94862 0.97192 1.70011 1.28802 1.20376 1.30832 0.86722 0.82932 0.77822 0.80826 1.20150 1.21194 1.20149 1.88779 1.44304 1.32713 1.61120 1.17492 0.89825 0.80788 1.03869 1.91457 1.80473 1.46097 1.93977 1.20823 0.91902 0.98955 1.06446 0.91206 0.91356 0.91672 0.85684 0.83650 0.91573 0.91456 0.92052 0.91453 0.92931 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 36.01 0.36 -0.67 16 2 C -0.07 -0.97 5.88 -104.63 -0.62 -1.58 16 3 C -0.13 -1.95 9.70 -39.58 -0.38 -2.33 16 4 C -0.06 -1.04 9.38 -39.59 -0.37 -1.42 16 5 C -0.11 -2.03 5.11 -104.55 -0.53 -2.56 16 6 C 0.11 2.44 3.41 -26.86 -0.09 2.35 16 7 H 0.07 1.44 7.90 -51.93 -0.41 1.03 16 8 C -0.15 -2.73 6.56 -24.48 -0.16 -2.89 16 9 C -0.14 -3.00 6.53 -24.78 -0.16 -3.16 16 10 C 0.21 5.30 3.35 -27.16 -0.09 5.20 16 11 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 12 C -0.55 -15.35 8.75 -34.44 -0.30 -15.66 16 13 H 0.06 1.61 7.52 -52.49 -0.39 1.21 16 14 C 0.08 2.27 5.41 -17.82 -0.10 2.17 16 15 N -0.86 -25.64 12.93 55.43 0.72 -24.92 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 O -0.35 -9.02 9.01 -35.23 -0.32 -9.33 16 21 C 0.10 1.69 7.25 -39.42 -0.29 1.40 16 22 F -0.14 -2.43 16.63 2.25 0.04 -2.40 16 23 C -0.16 -2.30 9.68 -39.52 -0.38 -2.68 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 26 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 28 H 0.15 2.82 7.30 -52.48 -0.38 2.44 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.19 8.05 -51.93 -0.42 0.78 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 1.40 7.65 -51.93 -0.40 1.00 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 292.02 15.07 4.40 4.40 Total: -1.00 -30.42 292.02 -7.81 -38.23 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.51 Total: -0.69 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -3.11 Total: -21.82 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.72 Total: -24.92 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.32 Total: -9.33 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.42 -7.81 -38.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686650599.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.995 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds