Wall clock time and date at job start Mon Mar 30 2020 06:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38261 * 119.98578 * 2 1 4 4 C 1.38227 * 120.04923 * 179.74861 * 3 2 1 5 5 C 1.38218 * 120.02568 * 0.55664 * 4 3 2 6 6 C 1.50702 * 120.01385 * 179.72357 * 5 4 3 7 7 H 1.08996 * 110.35196 * 216.86878 * 6 5 4 8 8 C 1.54944 * 110.31104 * 94.72312 * 6 5 4 9 9 C 1.55304 * 100.97800 * 204.65934 * 8 6 5 10 10 C 1.54384 * 102.25492 * 34.11596 * 9 8 6 11 11 H 1.08998 * 109.82952 * 98.24246 * 10 9 8 12 12 C 1.50696 * 109.83063 * 219.12939 * 10 9 8 13 13 H 1.08001 * 119.99842 * 359.97438 * 12 10 9 14 14 C 1.37880 * 120.00295 * 179.97438 * 12 10 9 15 15 N 1.31515 * 119.99486 * 359.97438 * 14 12 10 16 16 Si 1.86791 * 120.00035 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47444 * 59.99907 * 16 14 12 18 18 H 1.48501 * 109.47219 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47571 * 299.99473 * 16 14 12 20 20 O 1.43240 * 107.58460 * 338.63785 * 10 9 8 21 21 C 1.38440 * 119.97305 * 359.44073 * 5 4 3 22 22 F 1.35099 * 120.02636 * 180.25430 * 21 5 4 23 23 C 1.38179 * 119.98764 * 180.02562 * 2 1 3 24 24 H 1.09006 * 109.46582 * 269.97144 * 1 2 3 25 25 H 1.08991 * 109.47482 * 29.97265 * 1 2 3 26 26 H 1.08997 * 109.47186 * 149.98000 * 1 2 3 27 27 H 1.08003 * 119.97708 * 0.04606 * 3 2 1 28 28 H 1.08004 * 119.98520 * 180.27742 * 4 3 2 29 29 H 1.09002 * 111.12633 * 86.72064 * 8 6 5 30 30 H 1.08995 * 111.12590 * 322.60066 * 8 6 5 31 31 H 1.09006 * 110.84773 * 152.30089 * 9 8 6 32 32 H 1.08991 * 110.85201 * 275.92112 * 9 8 6 33 33 H 0.96997 * 119.99641 * 179.97438 * 15 14 12 34 34 H 1.08000 * 120.00908 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5803 1.1991 0.0052 5 6 4.2733 0.0032 -0.0011 6 6 5.7803 0.0052 -0.0017 7 1 6.1603 -0.8087 -0.6191 8 6 6.3189 -0.1211 1.4456 9 6 7.7200 0.5323 1.2979 10 6 7.4600 1.6307 0.2447 11 1 7.3111 2.5901 0.7400 12 6 8.6302 1.7197 -0.7007 13 1 9.4790 1.0644 -0.5725 14 6 8.6172 2.6377 -1.7294 15 7 7.5832 3.4353 -1.8858 16 14 10.0680 2.7485 -2.9007 17 1 10.2515 1.4441 -3.5863 18 1 9.8091 3.8059 -3.9107 19 1 11.2966 3.0833 -2.1368 20 8 6.2782 1.2662 -0.4780 21 6 3.5825 -1.1965 -0.0011 22 9 4.2587 -2.3660 -0.0021 23 6 2.1977 -1.1968 -0.0005 24 1 -0.3633 -0.0005 1.0278 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6574 2.1325 0.0008 28 1 4.1190 2.1352 0.0098 29 1 6.4022 -1.1662 1.7440 30 1 5.6973 0.4365 2.1461 31 1 8.0457 0.9694 2.2419 32 1 8.4488 -0.1910 0.9323 33 1 7.5742 4.0814 -2.6092 34 1 1.6576 -2.1321 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686650599.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:13 Heat of formation + Delta-G solvation = -95.075124 kcal Electronic energy + Delta-G solvation = -18164.097256 eV Core-core repulsion = 15168.085513 eV Total energy + Delta-G solvation = -2996.011743 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.90413 -40.67677 -39.34535 -34.96657 -33.84493 -32.70966 -31.46991 -30.52234 -28.01131 -25.82388 -23.79914 -23.18397 -22.06332 -21.53359 -18.65840 -18.16215 -17.82255 -17.17970 -16.73367 -16.58266 -16.19457 -15.68252 -14.94552 -14.90286 -14.47556 -14.34196 -14.28031 -13.87883 -13.68729 -13.19322 -12.86129 -12.79071 -12.62357 -12.44068 -12.37476 -12.25937 -12.04152 -11.72425 -11.58177 -11.14054 -10.68774 -9.99592 -9.78904 -9.38545 -8.14162 -6.35804 0.17183 0.28227 1.38783 1.41682 1.49147 2.39958 2.58829 3.01879 3.27315 3.44647 3.69928 3.81672 3.93013 4.00342 4.15445 4.27076 4.36606 4.54326 4.61984 4.70062 4.72212 4.87854 4.89183 4.92036 5.02206 5.12254 5.16383 5.22561 5.30762 5.50877 5.57612 5.62276 5.73655 5.99319 6.16990 6.55969 6.98622 7.40836 8.92769 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.029800 B = 0.005963 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.356095 B = 4694.193694 C = 5098.541952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.061 4.061 3 C -0.130 4.130 4 C -0.080 4.080 5 C -0.134 4.134 6 C 0.107 3.893 7 H 0.047 0.953 8 C -0.130 4.130 9 C -0.136 4.136 10 C 0.198 3.802 11 H 0.009 0.991 12 C -0.568 4.568 13 H 0.061 0.939 14 C 0.024 3.976 15 N -0.901 5.901 16 Si 0.959 3.041 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.263 1.263 20 O -0.379 6.379 21 C 0.087 3.913 22 F -0.147 7.147 23 C -0.154 4.154 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.150 0.850 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.261 0.739 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.252 -7.560 5.581 16.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.061 4.061 3 C -0.148 4.148 4 C -0.098 4.098 5 C -0.135 4.135 6 C 0.049 3.951 7 H 0.065 0.935 8 C -0.167 4.167 9 C -0.174 4.174 10 C 0.142 3.858 11 H 0.027 0.973 12 C -0.605 4.605 13 H 0.079 0.921 14 C -0.178 4.178 15 N -0.538 5.538 16 Si 0.783 3.217 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.188 1.188 20 O -0.299 6.299 21 C 0.068 3.932 22 F -0.125 7.125 23 C -0.173 4.173 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.168 0.832 28 H 0.133 0.867 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -13.388 -7.334 5.327 16.168 hybrid contribution 1.423 0.046 -0.698 1.586 sum -11.965 -7.288 4.629 14.755 Atomic orbital electron populations 1.20866 0.87466 1.04294 1.03862 1.20148 0.98249 0.91205 0.96474 1.21391 0.92805 0.99495 1.01129 1.20960 0.94924 0.97096 0.96825 1.20048 0.95534 0.93348 1.04618 1.21523 0.89604 0.89006 0.94963 0.93486 1.23141 0.96258 1.02009 0.95341 1.23100 0.96667 0.98176 0.99407 1.20225 0.83420 0.92544 0.89605 0.97307 1.21796 1.03266 1.20092 1.15339 0.92106 1.25926 0.98351 0.94485 0.99001 1.70158 1.30912 1.21171 1.31605 0.85629 0.79686 0.77826 0.78550 1.19823 1.20706 1.18757 1.88697 1.44324 1.34913 1.61929 1.17645 0.90955 0.79877 1.04754 1.91437 1.80852 1.46111 1.94130 1.21215 0.90595 1.00825 1.04625 0.89304 0.90112 0.89953 0.83197 0.86672 0.89054 0.90474 0.89973 0.91504 0.92972 0.82196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 10.01 71.24 0.71 -0.79 16 2 C -0.06 -1.39 5.88 -19.87 -0.12 -1.51 16 3 C -0.13 -3.57 9.70 22.27 0.22 -3.35 16 4 C -0.08 -2.91 9.38 22.26 0.21 -2.70 16 5 C -0.13 -5.16 5.11 -19.82 -0.10 -5.26 16 6 C 0.11 4.73 3.41 30.51 0.10 4.84 16 7 H 0.05 2.18 7.90 -2.39 -0.02 2.17 16 8 C -0.13 -4.87 6.56 32.05 0.21 -4.66 16 9 C -0.14 -5.72 6.53 31.86 0.21 -5.51 16 10 C 0.20 10.63 3.35 30.32 0.10 10.73 16 11 H 0.01 0.53 8.14 -2.39 -0.02 0.52 16 12 C -0.57 -32.95 8.75 25.60 0.22 -32.72 16 13 H 0.06 3.40 7.52 -2.91 -0.02 3.37 16 14 C 0.02 1.43 5.41 84.66 0.46 1.89 16 15 N -0.90 -55.53 12.93 21.45 0.28 -55.25 16 16 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 17 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 20 O -0.38 -20.61 9.01 -148.98 -1.34 -21.95 16 21 C 0.09 2.87 7.25 22.37 0.16 3.03 16 22 F -0.15 -4.93 16.63 44.97 0.75 -4.19 16 23 C -0.15 -3.92 9.68 22.31 0.22 -3.70 16 24 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 26 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 27 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 28 H 0.12 4.83 7.30 -2.91 -0.02 4.81 16 29 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.08 2.72 8.05 -2.39 -0.02 2.70 16 31 H 0.08 3.06 8.14 -2.38 -0.02 3.04 16 32 H 0.07 2.79 7.65 -2.39 -0.02 2.77 16 33 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -68.70 292.02 5.40 -63.30 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 1.09 Total: 10.76 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: 2.60 Total: -39.74 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.28 Total: -55.25 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -1.34 Total: -21.95 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.75 Total: -4.19 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -68.70 5.40 -63.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686650599.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.775 kcal (2) G-P(sol) polarization free energy of solvation -68.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds