Wall clock time and date at job start Mon Mar 30 2020 06:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38265 * 119.99038 * 2 1 4 4 C 1.38221 * 120.05308 * 180.23548 * 3 2 1 5 5 C 1.38230 * 120.02155 * 359.48354 * 4 3 2 6 6 C 1.50701 * 120.00739 * 180.23546 * 5 4 3 7 7 H 1.09005 * 109.86266 * 144.27009 * 6 5 4 8 8 C 1.54098 * 109.88045 * 265.27547 * 6 5 4 9 9 C 1.54805 * 104.18752 * 121.45763 * 8 6 5 10 10 C 1.55002 * 102.09366 * 20.88163 * 9 8 6 11 11 H 1.08998 * 110.61821 * 81.47443 * 10 9 8 12 12 C 1.50689 * 110.61692 * 204.31810 * 10 9 8 13 13 H 1.08002 * 120.00735 * 359.97438 * 12 10 9 14 14 C 1.37882 * 119.99852 * 179.97438 * 12 10 9 15 15 N 1.31517 * 120.00193 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 120.00035 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47441 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47238 * 120.00018 * 16 14 12 19 19 H 1.48500 * 109.47426 * 240.00061 * 16 14 12 20 20 O 1.43739 * 109.87904 * 23.11228 * 6 5 4 21 21 C 1.38431 * 119.97400 * 0.51614 * 5 4 3 22 22 F 1.35105 * 120.02491 * 179.76960 * 21 5 4 23 23 C 1.38183 * 119.98467 * 179.97438 * 2 1 3 24 24 H 1.08994 * 109.46865 * 90.00225 * 1 2 3 25 25 H 1.08992 * 109.47276 * 210.00258 * 1 2 3 26 26 H 1.08997 * 109.47062 * 330.00145 * 1 2 3 27 27 H 1.08002 * 119.97048 * 359.94959 * 3 2 1 28 28 H 1.07995 * 119.99145 * 179.72245 * 4 3 2 29 29 H 1.09004 * 110.48666 * 240.13706 * 8 6 5 30 30 H 1.08998 * 110.48603 * 2.64447 * 8 6 5 31 31 H 1.08996 * 110.90675 * 139.07558 * 9 8 6 32 32 H 1.09002 * 110.90904 * 262.64855 * 9 8 6 33 33 H 0.96993 * 120.00257 * 179.97438 * 15 14 12 34 34 H 1.08004 * 120.00897 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5803 1.1990 -0.0049 5 6 4.2733 0.0030 0.0009 6 6 5.7803 0.0050 0.0009 7 1 6.1518 -0.8237 0.6037 8 6 6.3045 -0.1207 -1.4427 9 6 7.1683 1.1480 -1.6445 10 6 7.4862 1.5601 -0.1844 11 1 8.3175 0.9741 0.2075 12 6 7.7929 3.0332 -0.1037 13 1 7.7700 3.6395 -0.9972 14 6 8.1029 3.6073 1.1110 15 7 8.1314 2.8691 2.1991 16 14 8.4838 5.4333 1.2110 17 1 8.3855 6.0344 -0.1432 18 1 7.5096 6.0933 2.1169 19 1 9.8585 5.6240 1.7392 20 8 6.2674 1.2515 0.5255 21 6 3.5824 -1.1966 0.0009 22 9 4.2586 -2.3662 0.0020 23 6 2.1976 -1.1969 0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6575 2.1325 -0.0008 28 1 4.1191 2.1350 -0.0094 29 1 6.9136 -1.0182 -1.5506 30 1 5.4751 -0.1364 -2.1497 31 1 8.0823 0.9135 -2.1901 32 1 6.6020 1.9272 -2.1546 33 1 8.3498 3.2728 3.0535 34 1 1.6575 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686650600.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:15 Heat of formation + Delta-G solvation = -96.243392 kcal Electronic energy + Delta-G solvation = -18181.592433 eV Core-core repulsion = 15185.530031 eV Total energy + Delta-G solvation = -2996.062403 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.91540 -40.71984 -39.31994 -35.00111 -33.87262 -32.69154 -31.48298 -30.54653 -28.03733 -25.82719 -23.84359 -23.19646 -22.10355 -21.45961 -18.85112 -17.99903 -17.64270 -17.17597 -16.95619 -16.55620 -16.26584 -15.55731 -15.12317 -14.94726 -14.42483 -14.36101 -14.26095 -14.08696 -13.61528 -13.14717 -12.92491 -12.84366 -12.65321 -12.39481 -12.31066 -12.12773 -12.06919 -11.87830 -11.39186 -11.07751 -10.76695 -10.14252 -9.80796 -9.41722 -8.19748 -6.40927 0.16644 0.27992 1.40345 1.41299 1.54488 2.38992 2.58785 2.99544 3.26702 3.48227 3.70358 3.84056 3.94888 4.01972 4.08128 4.26545 4.36722 4.50417 4.59388 4.71765 4.73165 4.88680 4.89417 4.91874 5.01198 5.11840 5.16045 5.23038 5.30550 5.45335 5.56614 5.57255 5.70912 5.98858 6.11445 6.52836 6.86610 7.35358 8.89616 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.027056 B = 0.006252 C = 0.005547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.648770 B = 4477.457407 C = 5047.007791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.061 4.061 3 C -0.130 4.130 4 C -0.079 4.079 5 C -0.133 4.133 6 C 0.100 3.900 7 H 0.044 0.956 8 C -0.132 4.132 9 C -0.134 4.134 10 C 0.197 3.803 11 H -0.005 1.005 12 C -0.547 4.547 13 H 0.070 0.930 14 C 0.021 3.979 15 N -0.907 5.907 16 Si 0.967 3.033 17 H -0.259 1.259 18 H -0.280 1.280 19 H -0.275 1.275 20 O -0.377 6.377 21 C 0.085 3.915 22 F -0.147 7.147 23 C -0.154 4.154 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.151 0.849 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.263 0.737 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.142 -5.955 -6.181 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.061 4.061 3 C -0.148 4.148 4 C -0.097 4.097 5 C -0.134 4.134 6 C 0.041 3.959 7 H 0.062 0.938 8 C -0.170 4.170 9 C -0.172 4.172 10 C 0.142 3.858 11 H 0.013 0.987 12 C -0.584 4.584 13 H 0.088 0.912 14 C -0.181 4.181 15 N -0.545 5.545 16 Si 0.791 3.209 17 H -0.182 1.182 18 H -0.206 1.206 19 H -0.201 1.201 20 O -0.297 6.297 21 C 0.066 3.934 22 F -0.126 7.126 23 C -0.173 4.173 24 H 0.107 0.893 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.169 0.831 28 H 0.135 0.865 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.176 -5.889 -5.843 16.425 hybrid contribution 1.087 0.385 0.419 1.227 sum -13.089 -5.504 -5.424 15.200 Atomic orbital electron populations 1.20864 0.87455 1.04303 1.03861 1.20151 0.98253 0.91202 0.96462 1.21396 0.92799 0.99503 1.01119 1.20975 0.94908 0.97154 0.96702 1.20031 0.95430 0.93352 1.04596 1.21368 0.90205 0.89379 0.94957 0.93814 1.22857 0.99916 0.99002 0.95177 1.23057 0.99531 0.96395 0.98202 1.20628 0.83184 0.95081 0.86897 0.98748 1.21430 1.48129 0.94237 0.94628 0.91183 1.26031 0.93623 1.03182 0.95270 1.70185 1.47194 1.37763 0.99362 0.85393 0.77816 0.79018 0.78711 1.18242 1.20599 1.20085 1.89171 1.41891 1.36097 1.62549 1.17663 0.90988 0.79883 1.04857 1.91437 1.80865 1.46131 1.94143 1.21215 0.90575 1.00836 1.04648 0.89314 0.89957 0.90087 0.83150 0.86531 0.90061 0.90151 0.90241 0.91550 0.92801 0.82211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.01 71.24 0.71 -0.79 16 2 C -0.06 -1.40 5.88 -19.87 -0.12 -1.51 16 3 C -0.13 -3.57 9.70 22.27 0.22 -3.35 16 4 C -0.08 -2.89 9.36 22.26 0.21 -2.68 16 5 C -0.13 -5.13 4.86 -19.82 -0.10 -5.22 16 6 C 0.10 4.41 3.40 30.22 0.10 4.51 16 7 H 0.04 2.01 7.84 -2.38 -0.02 2.00 16 8 C -0.13 -5.00 6.63 31.58 0.21 -4.79 16 9 C -0.13 -5.69 6.55 31.90 0.21 -5.48 16 10 C 0.20 10.67 3.08 30.53 0.09 10.76 16 11 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 12 C -0.55 -31.31 8.82 25.60 0.23 -31.08 16 13 H 0.07 3.82 7.77 -2.91 -0.02 3.80 16 14 C 0.02 1.19 5.44 84.66 0.46 1.65 16 15 N -0.91 -55.97 13.13 21.45 0.28 -55.69 16 16 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 17 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 20 O -0.38 -20.59 9.50 -148.98 -1.41 -22.00 16 21 C 0.09 2.83 7.24 22.37 0.16 2.99 16 22 F -0.15 -4.98 16.60 44.97 0.75 -4.24 16 23 C -0.15 -3.94 9.68 22.31 0.22 -3.72 16 24 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 26 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 27 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 28 H 0.12 4.88 7.32 -2.91 -0.02 4.86 16 29 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.08 2.74 7.69 -2.39 -0.02 2.72 16 31 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 32 H 0.07 2.77 8.05 -2.39 -0.02 2.75 16 33 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -68.52 292.58 5.33 -63.19 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.09 Total: 11.26 kcal Atomic # 6 Polarization: -41.33 SS G_CDS: 2.60 Total: -38.73 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.28 Total: -55.69 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -1.41 Total: -22.00 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.75 Total: -4.24 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -68.52 5.33 -63.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686650600.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.054 kcal (2) G-P(sol) polarization free energy of solvation -68.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds