Wall clock time and date at job start Mon Mar 30 2020 06:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38265 * 119.98869 * 2 1 4 4 C 1.38226 * 120.05353 * 179.97438 * 3 2 1 5 5 C 1.38216 * 120.02514 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.01501 * 179.97438 * 5 4 3 7 7 H 1.09003 * 110.55684 * 213.59830 * 6 5 4 8 8 C 1.55001 * 110.61887 * 90.54759 * 6 5 4 9 9 C 1.54805 * 102.09327 * 204.47624 * 8 6 5 10 10 C 1.54105 * 104.18986 * 20.88169 * 9 8 6 11 11 H 1.08995 * 110.00366 * 242.53441 * 10 9 8 12 12 C 1.50694 * 109.87949 * 121.45160 * 10 9 8 13 13 H 1.07998 * 120.00274 * 0.71662 * 12 10 9 14 14 C 1.37884 * 119.99795 * 180.71552 * 12 10 9 15 15 N 1.31514 * 120.00314 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 120.00056 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46741 * 89.99802 * 16 14 12 18 18 H 1.48491 * 109.47500 * 210.00070 * 16 14 12 19 19 H 1.48498 * 109.47012 * 330.00326 * 16 14 12 20 20 O 1.43742 * 107.28997 * 2.02653 * 10 9 8 21 21 C 1.38436 * 119.97572 * 0.02562 * 5 4 3 22 22 F 1.35104 * 120.02854 * 179.97438 * 21 5 4 23 23 C 1.38177 * 119.98869 * 180.25434 * 2 1 3 24 24 H 1.08999 * 109.46904 * 89.99787 * 1 2 3 25 25 H 1.08993 * 109.47045 * 209.99874 * 1 2 3 26 26 H 1.09002 * 109.47390 * 330.00296 * 1 2 3 27 27 H 1.08001 * 119.97583 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.98872 * 180.02562 * 4 3 2 29 29 H 1.09006 * 110.90644 * 322.67290 * 8 6 5 30 30 H 1.08998 * 110.90431 * 86.27889 * 8 6 5 31 31 H 1.09002 * 110.49280 * 262.20587 * 9 8 6 32 32 H 1.09005 * 110.60076 * 139.60923 * 9 8 6 33 33 H 0.96995 * 120.00484 * 179.97438 * 15 14 12 34 34 H 1.07999 * 120.01627 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1975 0.0000 4 6 3.5803 1.1991 0.0005 5 6 4.2733 0.0032 0.0005 6 6 5.7802 0.0052 0.0005 7 1 6.1641 -0.8444 -0.5642 8 6 6.3261 -0.0080 1.4512 9 6 7.7289 0.6227 1.2756 10 6 7.6324 1.3942 -0.0549 11 1 8.3345 0.9796 -0.7781 12 6 7.9353 2.8524 0.1751 13 1 8.1855 3.2022 1.1657 14 6 7.8931 3.7399 -0.8793 15 7 7.5880 3.3140 -2.0856 16 14 8.2679 5.5476 -0.5941 17 1 9.7224 5.7860 -0.7752 18 1 7.5064 6.3706 -1.5675 19 1 7.8730 5.9230 0.7873 20 8 6.2871 1.2449 -0.5387 21 6 3.5825 -1.1965 -0.0005 22 9 4.2587 -2.3661 -0.0011 23 6 2.1976 -1.1968 -0.0053 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6575 2.1325 -0.0004 28 1 4.1191 2.1352 0.0010 29 1 5.7044 0.6024 2.1063 30 1 6.4025 -1.0276 1.8287 31 1 8.4912 -0.1538 1.2118 32 1 7.9483 1.3049 2.0970 33 1 7.5579 3.9384 -2.8272 34 1 1.6577 -2.1321 -0.0099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686650601.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:17 Heat of formation + Delta-G solvation = -78.101025 kcal Electronic energy + Delta-G solvation = -18187.082858 eV Core-core repulsion = 15191.807168 eV Total energy + Delta-G solvation = -2995.275691 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.60926 -39.22953 -37.76316 -33.25351 -32.23134 -30.90993 -30.23882 -28.96336 -26.50264 -24.04536 -22.58065 -21.82667 -20.21793 -19.95931 -17.10014 -16.64737 -16.18960 -15.57822 -15.35831 -14.92496 -14.37692 -13.79921 -13.69295 -13.57546 -13.53832 -13.17763 -12.77007 -12.30495 -12.07600 -11.83542 -11.64814 -11.36133 -10.98414 -10.93651 -10.63763 -10.42937 -10.31445 -10.05138 -9.80357 -9.18369 -8.61294 -8.56845 -8.25887 -7.95430 -6.01121 -4.14527 1.40760 1.51451 3.29608 3.36648 3.39591 3.83142 4.41258 4.47069 4.78138 4.92042 5.06818 5.25909 5.35827 5.41826 5.51439 5.55366 5.64614 5.70810 5.76414 5.84976 6.09023 6.17188 6.26135 6.35222 6.39327 6.55319 6.65408 6.73015 6.77933 6.79052 6.94995 7.21143 7.54296 7.87546 8.23391 8.51020 8.98629 9.56139 11.06037 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.025973 B = 0.006490 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.782084 B = 4313.321140 C = 5017.537406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.072 4.072 3 C -0.135 4.135 4 C -0.056 4.056 5 C -0.102 4.102 6 C 0.103 3.897 7 H 0.062 0.938 8 C -0.138 4.138 9 C -0.145 4.145 10 C 0.203 3.797 11 H 0.027 0.973 12 C -0.533 4.533 13 H 0.063 0.937 14 C 0.077 3.923 15 N -0.862 5.862 16 Si 0.890 3.110 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 O -0.341 6.341 21 C 0.099 3.901 22 F -0.142 7.142 23 C -0.163 4.163 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.125 0.875 28 H 0.147 0.853 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.261 0.739 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.028 -6.918 4.638 13.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.072 4.072 3 C -0.153 4.153 4 C -0.074 4.074 5 C -0.103 4.103 6 C 0.044 3.956 7 H 0.080 0.920 8 C -0.176 4.176 9 C -0.183 4.183 10 C 0.148 3.852 11 H 0.045 0.955 12 C -0.570 4.570 13 H 0.081 0.919 14 C -0.129 4.129 15 N -0.498 5.498 16 Si 0.718 3.282 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.198 1.198 20 O -0.261 6.261 21 C 0.080 3.920 22 F -0.121 7.121 23 C -0.182 4.182 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.143 0.857 28 H 0.165 0.835 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.130 -6.764 4.307 13.718 hybrid contribution 0.450 0.568 0.142 0.739 sum -10.680 -6.196 4.449 13.124 Atomic orbital electron populations 1.20756 0.90949 1.02663 1.02332 1.19664 0.95964 0.92401 0.99211 1.21127 0.94290 0.97486 1.02416 1.21144 0.93296 0.98693 0.94253 1.19957 0.96418 0.91917 1.01961 1.21630 0.88234 0.92035 0.93737 0.92043 1.23039 0.97807 1.00067 0.96711 1.23058 0.94831 0.98927 1.01492 1.20315 0.81120 0.95401 0.88391 0.95497 1.21176 1.48604 0.92389 0.94853 0.91913 1.25091 0.93842 0.98829 0.95108 1.70041 1.45455 1.34781 0.99568 0.86642 0.78325 0.85098 0.78180 1.20530 1.21097 1.19759 1.89281 1.30966 1.34434 1.71399 1.17492 0.89856 0.80727 1.03903 1.91454 1.80476 1.46119 1.94005 1.20811 0.91858 0.98958 1.06530 0.91127 0.91682 0.91381 0.85666 0.83489 0.91308 0.92058 0.92993 0.91274 0.92913 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.00 0.36 -0.68 16 2 C -0.07 -0.96 5.88 -104.64 -0.62 -1.57 16 3 C -0.14 -1.99 9.70 -39.58 -0.38 -2.38 16 4 C -0.06 -1.02 9.38 -39.59 -0.37 -1.39 16 5 C -0.10 -1.93 5.12 -104.56 -0.54 -2.46 16 6 C 0.10 2.17 3.33 -26.83 -0.09 2.08 16 7 H 0.06 1.30 7.81 -51.93 -0.41 0.90 16 8 C -0.14 -2.66 6.57 -24.72 -0.16 -2.82 16 9 C -0.15 -3.06 6.63 -25.20 -0.17 -3.23 16 10 C 0.20 5.27 3.26 -27.31 -0.09 5.19 16 11 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 12 C -0.53 -14.85 8.78 -34.44 -0.30 -15.15 16 13 H 0.06 1.69 7.33 -52.49 -0.38 1.31 16 14 C 0.08 2.17 5.41 -17.82 -0.10 2.08 16 15 N -0.86 -25.58 12.92 55.43 0.72 -24.87 16 16 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 O -0.34 -8.85 9.26 -35.23 -0.33 -9.18 16 21 C 0.10 1.69 7.25 -39.42 -0.29 1.40 16 22 F -0.14 -2.42 16.58 2.25 0.04 -2.38 16 23 C -0.16 -2.31 9.68 -39.51 -0.38 -2.69 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 26 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.15 2.97 7.36 -52.49 -0.39 2.59 16 29 H 0.07 1.30 8.05 -51.93 -0.42 0.88 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.43 7.40 -51.93 -0.38 1.05 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 291.74 15.07 4.40 4.40 Total: -1.00 -30.28 291.74 -7.81 -38.09 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -4.49 Total: -0.61 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -3.12 Total: -21.64 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.72 Total: -24.87 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.33 Total: -9.18 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.28 -7.81 -38.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686650601.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.014 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds