Wall clock time and date at job start Mon Mar 30 2020 06:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38265 * 119.98869 * 2 1 4 4 C 1.38226 * 120.05353 * 179.97438 * 3 2 1 5 5 C 1.38216 * 120.02514 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.01501 * 179.97438 * 5 4 3 7 7 H 1.09003 * 110.55684 * 213.59830 * 6 5 4 8 8 C 1.55001 * 110.61887 * 90.54759 * 6 5 4 9 9 C 1.54805 * 102.09327 * 204.47624 * 8 6 5 10 10 C 1.54105 * 104.18986 * 20.88169 * 9 8 6 11 11 H 1.08995 * 110.00366 * 242.53441 * 10 9 8 12 12 C 1.50694 * 109.87949 * 121.45160 * 10 9 8 13 13 H 1.07998 * 120.00274 * 0.71662 * 12 10 9 14 14 C 1.37884 * 119.99795 * 180.71552 * 12 10 9 15 15 N 1.31514 * 120.00314 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 120.00056 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46741 * 89.99802 * 16 14 12 18 18 H 1.48491 * 109.47500 * 210.00070 * 16 14 12 19 19 H 1.48498 * 109.47012 * 330.00326 * 16 14 12 20 20 O 1.43742 * 107.28997 * 2.02653 * 10 9 8 21 21 C 1.38436 * 119.97572 * 0.02562 * 5 4 3 22 22 F 1.35104 * 120.02854 * 179.97438 * 21 5 4 23 23 C 1.38177 * 119.98869 * 180.25434 * 2 1 3 24 24 H 1.08999 * 109.46904 * 89.99787 * 1 2 3 25 25 H 1.08993 * 109.47045 * 209.99874 * 1 2 3 26 26 H 1.09002 * 109.47390 * 330.00296 * 1 2 3 27 27 H 1.08001 * 119.97583 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.98872 * 180.02562 * 4 3 2 29 29 H 1.09006 * 110.90644 * 322.67290 * 8 6 5 30 30 H 1.08998 * 110.90431 * 86.27889 * 8 6 5 31 31 H 1.09002 * 110.49280 * 262.20587 * 9 8 6 32 32 H 1.09005 * 110.60076 * 139.60923 * 9 8 6 33 33 H 0.96995 * 120.00484 * 179.97438 * 15 14 12 34 34 H 1.07999 * 120.01627 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1975 0.0000 4 6 3.5803 1.1991 0.0005 5 6 4.2733 0.0032 0.0005 6 6 5.7802 0.0052 0.0005 7 1 6.1641 -0.8444 -0.5642 8 6 6.3261 -0.0080 1.4512 9 6 7.7289 0.6227 1.2756 10 6 7.6324 1.3942 -0.0549 11 1 8.3345 0.9796 -0.7781 12 6 7.9353 2.8524 0.1751 13 1 8.1855 3.2022 1.1657 14 6 7.8931 3.7399 -0.8793 15 7 7.5880 3.3140 -2.0856 16 14 8.2679 5.5476 -0.5941 17 1 9.7224 5.7860 -0.7752 18 1 7.5064 6.3706 -1.5675 19 1 7.8730 5.9230 0.7873 20 8 6.2871 1.2449 -0.5387 21 6 3.5825 -1.1965 -0.0005 22 9 4.2587 -2.3661 -0.0011 23 6 2.1976 -1.1968 -0.0053 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6575 2.1325 -0.0004 28 1 4.1191 2.1352 0.0010 29 1 5.7044 0.6024 2.1063 30 1 6.4025 -1.0276 1.8287 31 1 8.4912 -0.1538 1.2118 32 1 7.9483 1.3049 2.0970 33 1 7.5579 3.9384 -2.8272 34 1 1.6577 -2.1321 -0.0099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686650601.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:17 Heat of formation + Delta-G solvation = -94.916515 kcal Electronic energy + Delta-G solvation = -18187.812033 eV Core-core repulsion = 15191.807168 eV Total energy + Delta-G solvation = -2996.004865 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.91638 -40.66138 -39.35758 -34.98169 -33.87361 -32.68897 -31.48212 -30.52185 -28.02622 -25.76355 -23.89498 -23.29788 -21.88139 -21.55241 -19.00911 -17.98832 -17.64151 -17.06427 -16.78360 -16.52868 -16.28547 -15.59415 -15.14918 -14.93661 -14.45692 -14.35961 -14.32325 -14.10055 -13.53690 -13.17191 -12.87758 -12.82173 -12.64000 -12.45168 -12.32816 -12.11360 -12.01536 -11.73550 -11.54927 -11.10011 -10.72363 -10.09899 -9.80751 -9.41509 -8.15757 -6.37255 0.15905 0.27593 1.40180 1.41502 1.52524 2.39928 2.58077 3.00569 3.25862 3.45111 3.71678 3.83630 3.97833 4.01485 4.11552 4.24771 4.34365 4.53406 4.58469 4.70884 4.71999 4.88384 4.90977 4.93189 5.01926 5.12720 5.17195 5.23696 5.30693 5.46695 5.56112 5.57106 5.71015 5.98473 6.14823 6.50137 6.92288 7.38577 8.92413 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.025973 B = 0.006490 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.782084 B = 4313.321140 C = 5017.537406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.059 4.059 3 C -0.131 4.131 4 C -0.079 4.079 5 C -0.129 4.129 6 C 0.096 3.904 7 H 0.052 0.948 8 C -0.125 4.125 9 C -0.138 4.138 10 C 0.194 3.806 11 H -0.010 1.010 12 C -0.552 4.552 13 H 0.067 0.933 14 C 0.022 3.978 15 N -0.904 5.904 16 Si 0.963 3.037 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.263 1.263 20 O -0.371 6.371 21 C 0.088 3.912 22 F -0.146 7.146 23 C -0.154 4.154 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.149 0.851 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.262 0.738 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.341 -7.197 5.888 16.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.059 4.059 3 C -0.149 4.149 4 C -0.097 4.097 5 C -0.130 4.130 6 C 0.038 3.962 7 H 0.070 0.930 8 C -0.163 4.163 9 C -0.175 4.175 10 C 0.138 3.862 11 H 0.007 0.993 12 C -0.589 4.589 13 H 0.085 0.915 14 C -0.180 4.180 15 N -0.541 5.541 16 Si 0.787 3.213 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.187 1.187 20 O -0.291 6.291 21 C 0.069 3.931 22 F -0.125 7.125 23 C -0.172 4.172 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.167 0.833 28 H 0.132 0.868 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.440 -7.055 5.575 16.170 hybrid contribution 1.088 0.575 -0.275 1.261 sum -12.352 -6.480 5.300 14.921 Atomic orbital electron populations 1.20868 0.87433 1.04476 1.03728 1.20148 0.98264 0.91176 0.96350 1.21387 0.92773 0.99532 1.01209 1.20959 0.94958 0.97124 0.96652 1.19825 0.94999 0.93334 1.04846 1.21760 0.90255 0.89725 0.94485 0.93038 1.22971 0.96182 1.01529 0.95584 1.22945 0.96768 0.99068 0.98751 1.20238 0.80774 0.95307 0.89866 0.99268 1.21578 1.48555 0.93647 0.95144 0.91474 1.25993 0.93530 1.03770 0.94693 1.70193 1.46947 1.36434 1.00552 0.85502 0.78439 0.78991 0.78353 1.19497 1.20853 1.18742 1.89201 1.30656 1.36853 1.72391 1.17632 0.90970 0.79819 1.04680 1.91439 1.80830 1.46051 1.94133 1.21217 0.90564 1.00835 1.04590 0.89713 0.89664 0.89924 0.83284 0.86834 0.91100 0.89177 0.91096 0.90902 0.92944 0.82064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.01 71.23 0.71 -0.81 16 2 C -0.06 -1.37 5.88 -19.87 -0.12 -1.49 16 3 C -0.13 -3.66 9.70 22.27 0.22 -3.45 16 4 C -0.08 -2.93 9.38 22.26 0.21 -2.72 16 5 C -0.13 -4.98 5.12 -19.82 -0.10 -5.09 16 6 C 0.10 4.22 3.33 30.53 0.10 4.32 16 7 H 0.05 2.30 7.81 -2.39 -0.02 2.28 16 8 C -0.13 -4.80 6.57 31.90 0.21 -4.59 16 9 C -0.14 -5.87 6.63 31.58 0.21 -5.66 16 10 C 0.19 10.55 3.26 30.22 0.10 10.65 16 11 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 12 C -0.55 -31.76 8.78 25.60 0.22 -31.54 16 13 H 0.07 3.69 7.33 -2.91 -0.02 3.66 16 14 C 0.02 1.28 5.41 84.66 0.46 1.73 16 15 N -0.90 -55.84 12.92 21.45 0.28 -55.56 16 16 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 19 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 20 O -0.37 -20.34 9.26 -148.98 -1.38 -21.72 16 21 C 0.09 2.90 7.25 22.38 0.16 3.06 16 22 F -0.15 -4.85 16.58 44.97 0.75 -4.10 16 23 C -0.15 -3.90 9.68 22.31 0.22 -3.68 16 24 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 26 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 27 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 28 H 0.11 4.92 7.36 -2.91 -0.02 4.90 16 29 H 0.07 2.67 8.05 -2.38 -0.02 2.65 16 30 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.07 3.02 7.40 -2.38 -0.02 3.00 16 33 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -68.73 291.74 5.36 -63.37 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 1.09 Total: 10.86 kcal Atomic # 6 Polarization: -41.85 SS G_CDS: 2.60 Total: -39.25 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.28 Total: -55.56 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -1.38 Total: -21.72 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.75 Total: -4.10 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -68.73 5.36 -63.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686650601.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.544 kcal (2) G-P(sol) polarization free energy of solvation -68.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds