Wall clock time and date at job start Mon Mar 30 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38127 * 120.03704 * 2 1 4 4 C 1.38269 * 120.07293 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.92116 * 180.02562 * 4 3 2 6 6 C 1.38302 * 120.14858 * 0.02562 * 4 3 2 7 7 N 1.48012 * 119.95865 * 179.97438 * 6 4 3 8 8 O 1.21793 * 119.99759 * 186.16310 * 7 6 4 9 9 O 1.21793 * 119.99881 * 6.16734 * 7 6 4 10 10 C 1.38078 * 120.07709 * 359.72480 * 6 4 3 11 11 C 1.38890 * 120.03758 * 179.97438 * 2 1 3 12 12 N 1.39672 * 120.07680 * 0.02562 * 11 2 1 13 13 C 1.46493 * 120.00312 * 179.97438 * 12 11 2 14 14 C 1.50700 * 109.47311 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99858 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00015 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00094 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99928 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47133 * 89.99979 * 18 16 14 20 20 H 1.48503 * 109.47049 * 209.99656 * 18 16 14 21 21 H 1.48495 * 109.46962 * 329.99944 * 18 16 14 22 22 H 1.09000 * 109.47258 * 270.02056 * 1 2 3 23 23 H 1.09010 * 109.47407 * 30.01883 * 1 2 3 24 24 H 1.08995 * 109.47144 * 150.01668 * 1 2 3 25 25 H 1.07999 * 119.96653 * 0.02562 * 3 2 1 26 26 H 1.09003 * 109.47152 * 96.91874 * 5 4 3 27 27 H 1.09004 * 109.46923 * 216.91502 * 5 4 3 28 28 H 1.09000 * 109.47929 * 336.91514 * 5 4 3 29 29 H 1.08004 * 120.03881 * 180.27967 * 10 6 4 30 30 H 0.97003 * 119.99328 * 0.02562 * 12 11 2 31 31 H 1.08998 * 109.47433 * 300.00356 * 13 12 11 32 32 H 1.09000 * 109.47045 * 60.00297 * 13 12 11 33 33 H 0.97000 * 119.99796 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1966 0.0005 5 6 4.3319 2.5032 0.0011 6 6 4.2764 0.0011 0.0005 7 7 5.7565 0.0070 0.0005 8 8 6.3696 -1.0393 -0.1127 9 8 6.3613 1.0580 0.1139 10 6 3.5915 -1.1978 0.0057 11 6 2.2022 -1.2024 0.0005 12 7 1.5062 -2.4134 0.0005 13 6 2.2412 -3.6806 0.0005 14 6 1.2641 -4.8280 -0.0001 15 1 0.2019 -4.6327 0.0000 16 6 1.7263 -6.1269 0.0003 17 7 3.0198 -6.3647 0.0008 18 14 0.5151 -7.5492 0.0003 19 1 0.1946 -7.9263 -1.3998 20 1 1.1172 -8.7121 0.7007 21 1 -0.7291 -7.1398 0.6998 22 1 -0.3634 0.0004 1.0277 23 1 -0.3634 0.8899 -0.5142 24 1 -0.3633 -0.8901 -0.5135 25 1 1.6584 2.1311 0.0004 26 1 4.6199 2.7563 1.0215 27 1 5.2256 2.4089 -0.6158 28 1 3.6936 3.2895 -0.4019 29 1 4.1352 -2.1310 0.0103 30 1 0.5362 -2.4152 -0.0002 31 1 2.8680 -3.7371 -0.8894 32 1 2.8679 -3.7371 0.8906 33 1 3.3449 -7.2786 0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687761493.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:45 Heat of formation + Delta-G solvation = 10.407306 kcal Electronic energy + Delta-G solvation = -17857.933833 eV Core-core repulsion = 14886.416113 eV Total energy + Delta-G solvation = -2971.517720 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.86180 -39.60995 -36.38371 -35.66432 -33.44262 -32.59356 -31.10949 -28.33421 -27.66544 -26.03337 -24.24816 -23.17398 -21.35896 -20.84575 -18.82990 -18.17214 -17.22031 -16.85714 -15.83230 -15.24975 -14.88578 -14.58690 -14.27934 -13.66632 -13.48150 -13.24017 -12.91881 -12.66250 -12.29024 -12.17698 -11.73809 -11.66046 -11.33218 -11.04697 -11.00626 -10.95277 -10.75953 -10.33379 -10.30538 -9.77002 -9.55840 -9.02977 -8.67642 -6.95088 -6.31533 -4.39361 0.24690 1.49265 1.79858 1.83162 3.15857 3.22610 3.24574 3.67301 3.99878 4.27601 4.64875 4.86253 4.89724 5.05509 5.14064 5.30407 5.52358 5.56979 5.62911 5.73317 5.85669 5.90418 5.98916 6.14085 6.37807 6.41489 6.50060 6.85339 6.98986 7.20849 7.43179 7.76566 7.90512 8.06806 8.34411 8.69300 9.27818 10.78655 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.026144 B = 0.005679 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.753235 B = 4929.549911 C = 5973.216310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.129 4.129 3 C -0.075 4.075 4 C -0.101 4.101 5 C -0.115 4.115 6 C 0.002 3.998 7 N 0.034 4.966 8 O -0.169 6.169 9 O -0.173 6.173 10 C -0.140 4.140 11 C 0.231 3.769 12 N -0.714 5.714 13 C 0.244 3.756 14 C -0.546 4.546 15 H 0.063 0.937 16 C 0.066 3.934 17 N -0.884 5.884 18 Si 0.906 3.094 19 H -0.278 1.278 20 H -0.283 1.283 21 H -0.273 1.273 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.136 0.864 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.155 0.845 30 H 0.398 0.602 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.424 14.190 -0.001 14.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.135 4.135 3 C -0.094 4.094 4 C -0.105 4.105 5 C -0.172 4.172 6 C -0.082 4.082 7 N 0.549 4.451 8 O -0.383 6.383 9 O -0.385 6.385 10 C -0.164 4.164 11 C 0.118 3.882 12 N -0.337 5.337 13 C 0.123 3.877 14 C -0.584 4.584 15 H 0.081 0.919 16 C -0.138 4.138 17 N -0.521 5.521 18 Si 0.732 3.268 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.197 1.197 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.154 0.846 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.172 0.828 30 H 0.234 0.766 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.875 13.763 0.004 14.298 hybrid contribution -0.488 -1.008 0.010 1.120 sum -4.363 12.754 0.014 13.480 Atomic orbital electron populations 1.20679 0.90454 1.02968 1.02526 1.19742 0.96584 0.91623 1.05583 1.20547 0.91567 0.97511 0.99820 1.19354 0.93876 0.93588 1.03697 1.21041 1.00405 0.92286 1.03429 1.20542 0.78019 0.96030 1.13594 1.43672 1.04028 1.00052 0.97311 1.94566 1.68982 1.21382 1.53359 1.94396 1.70129 1.20513 1.53420 1.20442 0.93165 0.97622 1.05212 1.17542 0.90076 0.87366 0.93191 1.45700 1.08779 1.03327 1.75898 1.19293 0.92908 0.78341 0.97153 1.21087 0.92912 0.90491 1.53897 0.91882 1.24937 0.95506 0.98997 0.94395 1.69942 1.12500 1.21283 1.48329 0.86381 0.80722 0.81313 0.78338 1.20347 1.20844 1.19737 0.90892 0.91148 0.91329 0.84586 0.90783 0.89326 0.91971 0.82771 0.76599 0.95627 0.95659 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.57 36.00 0.34 -0.84 16 2 C -0.13 -1.81 5.90 -104.42 -0.62 -2.43 16 3 C -0.08 -0.95 9.32 -39.61 -0.37 -1.32 16 4 C -0.10 -1.46 5.88 -104.59 -0.62 -2.07 16 5 C -0.12 -1.37 8.68 36.00 0.31 -1.06 16 6 C 0.00 0.04 6.83 -79.99 -0.55 -0.51 16 7 N 0.03 0.64 4.45 33.94 0.15 0.79 16 8 O -0.17 -3.40 18.46 -29.46 -0.54 -3.95 16 9 O -0.17 -3.00 15.34 -29.46 -0.45 -3.45 16 10 C -0.14 -2.62 8.82 -39.38 -0.35 -2.97 16 11 C 0.23 4.03 6.63 -83.79 -0.56 3.48 16 12 N -0.71 -13.73 5.62 -59.81 -0.34 -14.07 16 13 C 0.24 5.86 4.67 -5.20 -0.02 5.84 16 14 C -0.55 -14.07 9.28 -34.44 -0.32 -14.39 16 15 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 16 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.88 -24.88 13.29 55.43 0.74 -24.14 16 18 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.61 8.09 -51.92 -0.42 0.19 16 24 H 0.07 0.77 6.55 -51.93 -0.34 0.43 16 25 H 0.14 1.26 8.05 -52.49 -0.42 0.84 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.09 1.15 5.85 -51.93 -0.30 0.84 16 28 H 0.06 0.58 8.03 -51.93 -0.42 0.16 16 29 H 0.15 3.19 6.30 -52.48 -0.33 2.86 16 30 H 0.40 6.90 6.32 -40.82 -0.26 6.64 16 31 H 0.03 0.67 7.96 -51.93 -0.41 0.26 16 32 H 0.03 0.66 7.94 -51.93 -0.41 0.25 16 33 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 LS Contribution 286.34 15.07 4.32 4.32 Total: -1.00 -28.29 286.34 -7.68 -35.97 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -3.70 Total: 3.97 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -2.83 Total: -14.62 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.55 Total: -37.42 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -1.00 Total: -7.40 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.29 -7.68 -35.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687761493.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.378 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds