Wall clock time and date at job start Mon Mar 30 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38127 * 120.03704 * 2 1 4 4 C 1.38269 * 120.07293 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.92116 * 180.02562 * 4 3 2 6 6 C 1.38302 * 120.14858 * 0.02562 * 4 3 2 7 7 N 1.48012 * 119.95865 * 179.97438 * 6 4 3 8 8 O 1.21793 * 119.99759 * 186.16310 * 7 6 4 9 9 O 1.21793 * 119.99881 * 6.16734 * 7 6 4 10 10 C 1.38078 * 120.07709 * 359.72480 * 6 4 3 11 11 C 1.38890 * 120.03758 * 179.97438 * 2 1 3 12 12 N 1.39672 * 120.07680 * 0.02562 * 11 2 1 13 13 C 1.46493 * 120.00312 * 179.97438 * 12 11 2 14 14 C 1.50700 * 109.47311 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99858 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00015 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00094 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99928 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47133 * 89.99979 * 18 16 14 20 20 H 1.48503 * 109.47049 * 209.99656 * 18 16 14 21 21 H 1.48495 * 109.46962 * 329.99944 * 18 16 14 22 22 H 1.09000 * 109.47258 * 270.02056 * 1 2 3 23 23 H 1.09010 * 109.47407 * 30.01883 * 1 2 3 24 24 H 1.08995 * 109.47144 * 150.01668 * 1 2 3 25 25 H 1.07999 * 119.96653 * 0.02562 * 3 2 1 26 26 H 1.09003 * 109.47152 * 96.91874 * 5 4 3 27 27 H 1.09004 * 109.46923 * 216.91502 * 5 4 3 28 28 H 1.09000 * 109.47929 * 336.91514 * 5 4 3 29 29 H 1.08004 * 120.03881 * 180.27967 * 10 6 4 30 30 H 0.97003 * 119.99328 * 0.02562 * 12 11 2 31 31 H 1.08998 * 109.47433 * 300.00356 * 13 12 11 32 32 H 1.09000 * 109.47045 * 60.00297 * 13 12 11 33 33 H 0.97000 * 119.99796 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1966 0.0005 5 6 4.3319 2.5032 0.0011 6 6 4.2764 0.0011 0.0005 7 7 5.7565 0.0070 0.0005 8 8 6.3696 -1.0393 -0.1127 9 8 6.3613 1.0580 0.1139 10 6 3.5915 -1.1978 0.0057 11 6 2.2022 -1.2024 0.0005 12 7 1.5062 -2.4134 0.0005 13 6 2.2412 -3.6806 0.0005 14 6 1.2641 -4.8280 -0.0001 15 1 0.2019 -4.6327 0.0000 16 6 1.7263 -6.1269 0.0003 17 7 3.0198 -6.3647 0.0008 18 14 0.5151 -7.5492 0.0003 19 1 0.1946 -7.9263 -1.3998 20 1 1.1172 -8.7121 0.7007 21 1 -0.7291 -7.1398 0.6998 22 1 -0.3634 0.0004 1.0277 23 1 -0.3634 0.8899 -0.5142 24 1 -0.3633 -0.8901 -0.5135 25 1 1.6584 2.1311 0.0004 26 1 4.6199 2.7563 1.0215 27 1 5.2256 2.4089 -0.6158 28 1 3.6936 3.2895 -0.4019 29 1 4.1352 -2.1310 0.0103 30 1 0.5362 -2.4152 -0.0002 31 1 2.8680 -3.7371 -0.8894 32 1 2.8679 -3.7371 0.8906 33 1 3.3449 -7.2786 0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687761493.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:45 Heat of formation + Delta-G solvation = -6.097514 kcal Electronic energy + Delta-G solvation = -17858.649536 eV Core-core repulsion = 14886.416113 eV Total energy + Delta-G solvation = -2972.233423 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.30572 -40.91154 -37.82079 -37.18671 -35.08749 -34.05820 -32.49005 -29.63861 -29.21524 -27.37047 -25.71297 -24.77504 -22.79937 -22.17055 -20.28946 -19.64874 -18.69307 -18.60438 -17.39990 -16.72443 -16.44574 -15.99052 -15.58240 -15.04592 -14.79041 -14.59942 -14.14437 -14.02725 -13.66120 -13.25689 -13.01428 -12.98382 -12.88370 -12.72475 -12.44852 -12.41997 -12.25740 -12.11438 -11.63097 -11.50324 -11.27206 -10.67211 -10.18301 -8.42141 -8.35398 -6.51617 -1.14177 0.25836 0.43315 0.46657 1.39251 1.40868 1.52128 2.28491 2.41361 2.62440 3.00308 3.50676 3.67707 3.75632 3.94118 4.14810 4.49609 4.59232 4.61080 4.76670 4.79983 4.83269 4.92152 5.07282 5.11237 5.15080 5.21805 5.25182 5.36460 5.45979 5.69517 5.79380 6.21261 6.58357 6.60865 6.95923 7.22240 8.76396 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.026144 B = 0.005679 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.753235 B = 4929.549911 C = 5973.216310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.102 4.102 3 C -0.064 4.064 4 C -0.078 4.078 5 C -0.117 4.117 6 C -0.023 4.023 7 N 0.035 4.965 8 O -0.255 6.255 9 O -0.119 6.119 10 C -0.172 4.172 11 C 0.205 3.795 12 N -0.719 5.719 13 C 0.267 3.733 14 C -0.557 4.557 15 H 0.079 0.921 16 C 0.007 3.993 17 N -0.929 5.929 18 Si 0.981 3.019 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.257 1.257 22 H 0.090 0.910 23 H 0.107 0.893 24 H 0.062 0.938 25 H 0.193 0.807 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.408 0.592 31 H -0.011 1.011 32 H -0.011 1.011 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.682 17.621 0.104 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.108 4.108 3 C -0.083 4.083 4 C -0.082 4.082 5 C -0.174 4.174 6 C -0.108 4.108 7 N 0.546 4.454 8 O -0.447 6.447 9 O -0.348 6.348 10 C -0.197 4.197 11 C 0.096 3.904 12 N -0.346 5.346 13 C 0.143 3.857 14 C -0.595 4.595 15 H 0.097 0.903 16 C -0.193 4.193 17 N -0.567 5.567 18 Si 0.805 3.195 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.181 1.181 22 H 0.108 0.892 23 H 0.126 0.874 24 H 0.081 0.919 25 H 0.210 0.790 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.246 0.754 31 H 0.007 0.993 32 H 0.007 0.993 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.120 17.062 0.087 18.488 hybrid contribution 0.513 -1.676 -0.004 1.753 sum -6.607 15.386 0.083 16.745 Atomic orbital electron populations 1.20853 0.87403 1.04540 1.04023 1.20265 0.98665 0.90320 1.01504 1.21179 0.90625 0.98970 0.97509 1.19984 0.94997 0.93362 0.99883 1.21182 1.00485 0.91521 1.04172 1.20747 0.77021 0.96919 1.16086 1.43894 1.04770 0.99738 0.97004 1.94595 1.69701 1.22137 1.58297 1.94323 1.70676 1.19985 1.49837 1.20229 0.94158 0.96915 1.08413 1.17792 0.89568 0.88161 0.94850 1.45180 1.08804 1.02345 1.78254 1.18644 0.92333 0.80862 0.93821 1.21532 0.93808 0.91074 1.53082 0.90321 1.25998 0.97277 1.02208 0.93803 1.70108 1.14904 1.21900 1.49783 0.85203 0.78475 0.77252 0.78604 1.19625 1.20913 1.18060 0.89202 0.87424 0.91945 0.78967 0.89503 0.90519 0.87772 0.87075 0.75367 0.99325 0.99305 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.89 9.57 71.23 0.68 -1.20 16 2 C -0.10 -2.54 5.90 -19.74 -0.12 -2.65 16 3 C -0.06 -1.28 9.32 22.25 0.21 -1.07 16 4 C -0.08 -2.00 5.88 -19.84 -0.12 -2.12 16 5 C -0.12 -2.21 8.68 71.24 0.62 -1.59 16 6 C -0.02 -0.84 6.83 36.35 0.25 -0.59 16 7 N 0.03 1.36 4.45 -46.52 -0.21 1.15 16 8 O -0.25 -11.49 18.46 18.89 0.35 -11.14 16 9 O -0.12 -4.06 15.34 18.89 0.29 -3.77 16 10 C -0.17 -7.00 8.82 22.40 0.20 -6.80 16 11 C 0.21 7.33 6.63 38.21 0.25 7.58 16 12 N -0.72 -28.79 5.62 -343.15 -1.93 -30.72 16 13 C 0.27 13.89 4.67 85.63 0.40 14.29 16 14 C -0.56 -29.74 9.28 25.60 0.24 -29.51 16 15 H 0.08 3.85 7.60 -2.91 -0.02 3.82 16 16 C 0.01 0.39 5.46 84.65 0.46 0.86 16 17 N -0.93 -55.25 13.29 21.45 0.28 -54.97 16 18 Si 0.98 41.95 29.54 68.60 2.03 43.98 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 22 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.11 1.11 8.09 -2.38 -0.02 1.09 16 24 H 0.06 1.19 6.55 -2.39 -0.02 1.17 16 25 H 0.19 1.86 8.05 -2.91 -0.02 1.84 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.08 1.70 5.85 -2.39 -0.01 1.68 16 28 H 0.10 1.18 8.03 -2.39 -0.02 1.16 16 29 H 0.11 5.40 6.30 -2.91 -0.02 5.38 16 30 H 0.41 14.15 6.32 -92.71 -0.59 13.57 16 31 H -0.01 -0.64 7.96 -2.39 -0.02 -0.66 16 32 H -0.01 -0.63 7.94 -2.39 -0.02 -0.65 16 33 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -68.61 286.34 4.44 -64.17 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.56 Total: 14.11 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: 3.07 Total: -22.80 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -1.85 Total: -84.54 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.64 Total: -14.91 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -68.61 4.44 -64.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687761493.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.068 kcal (2) G-P(sol) polarization free energy of solvation -68.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds