Wall clock time and date at job start Mon Mar 30 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35933 * 117.00506 * 2 1 4 4 C 1.38820 * 119.95773 * 0.02562 * 3 2 1 5 5 C 1.38098 * 120.11224 * 180.02562 * 4 3 2 6 6 C 1.38770 * 120.03961 * 359.97128 * 5 4 3 7 7 O 1.35839 * 120.03543 * 179.72489 * 6 5 4 8 8 C 1.34791 * 116.99997 * 353.94949 * 7 6 5 9 9 H 1.07993 * 120.00301 * 354.70064 * 8 7 6 10 10 C 1.38625 * 119.99761 * 174.69550 * 8 7 6 11 11 N 1.31582 * 119.99861 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99763 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47652 * 89.99967 * 12 10 8 14 14 H 1.48510 * 109.46769 * 209.99648 * 12 10 8 15 15 H 1.48495 * 109.47308 * 329.99203 * 12 10 8 16 16 C 1.39357 * 119.92530 * 0.02562 * 6 5 4 17 17 O 1.35940 * 120.05913 * 179.97438 * 16 6 5 18 18 C 1.42897 * 117.00152 * 186.03831 * 17 16 6 19 19 C 1.53007 * 117.49513 * 225.42300 * 18 17 16 20 20 C 1.52994 * 60.00130 * 252.50908 * 19 18 17 21 21 C 1.38504 * 119.88627 * 0.04223 * 16 6 5 22 22 H 1.08998 * 109.47316 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47138 * 299.99947 * 1 2 3 24 24 H 1.08999 * 109.46904 * 59.99700 * 1 2 3 25 25 H 1.07992 * 119.94485 * 359.97438 * 4 3 2 26 26 H 1.08001 * 119.98255 * 179.97438 * 5 4 3 27 27 H 0.97005 * 119.99906 * 179.97438 * 11 10 8 28 28 H 1.08996 * 115.55221 * 11.13043 * 18 17 16 29 29 H 1.09004 * 117.50111 * 0.02562 * 19 18 17 30 30 H 1.09001 * 117.49677 * 145.01645 * 19 18 17 31 31 H 1.08994 * 117.50424 * 252.51370 * 20 19 18 32 32 H 1.09010 * 117.49849 * 107.48811 * 20 19 18 33 33 H 1.08004 * 120.02066 * 179.97438 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2894 2.3749 0.0005 5 6 1.9131 3.6070 0.0000 6 6 3.2987 3.6842 -0.0005 7 8 3.9121 4.8961 -0.0066 8 6 3.1229 5.9808 -0.1387 9 1 2.0650 5.8602 -0.3192 10 6 3.6692 7.2513 -0.0427 11 7 2.8988 8.3101 -0.1720 12 14 5.4991 7.4599 0.2690 13 1 6.2188 7.5186 -1.0286 14 1 5.7326 8.7185 1.0219 15 1 6.0007 6.3087 1.0617 16 6 4.0600 2.5169 -0.0009 17 8 5.4175 2.5894 -0.0019 18 6 6.1327 1.3596 -0.1363 19 6 7.3171 1.1249 0.8036 20 6 7.5629 1.4294 -0.6755 21 6 3.4312 1.2828 -0.0018 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2110 2.3166 0.0005 26 1 1.3223 4.5110 0.0000 27 1 3.2810 9.1991 -0.1045 28 1 5.5315 0.4941 -0.4147 29 1 7.5504 1.9084 1.5246 30 1 7.4951 0.1048 1.1438 31 1 7.9026 0.6097 -1.3084 32 1 7.9581 2.4135 -0.9279 33 1 4.0191 0.3768 -0.0026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687815280.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:40 Heat of formation + Delta-G solvation = -33.187633 kcal Electronic energy + Delta-G solvation = -18006.595416 eV Core-core repulsion = 15000.894527 eV Total energy + Delta-G solvation = -3005.700890 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.06974 -38.66451 -38.00268 -35.74422 -34.52155 -32.29752 -29.95231 -28.47365 -26.81096 -25.11743 -23.37234 -22.37392 -21.27719 -20.71034 -18.68901 -17.91517 -16.84883 -16.41472 -15.76652 -15.43253 -14.81546 -14.55004 -14.39234 -14.24806 -13.75170 -13.49380 -13.21317 -12.39470 -12.31334 -12.12726 -11.78401 -11.56375 -11.50173 -11.46567 -10.92099 -10.68143 -10.31515 -10.27934 -10.16425 -9.61267 -9.45172 -8.76508 -7.99361 -6.90547 -6.37157 -4.00466 1.89785 2.16748 3.27990 3.31138 3.41129 3.49756 3.69858 3.87276 4.30934 4.36452 4.71592 4.87495 4.99365 5.11521 5.16574 5.23024 5.33236 5.37597 5.52817 5.59314 5.63767 5.64521 5.90098 5.98366 6.13783 6.16339 6.21451 6.50046 6.87955 7.01899 7.22655 7.65091 7.79463 7.93908 8.11730 8.98766 9.62377 10.70517 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.015782 B = 0.008520 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.722900 B = 3285.441989 C = 4969.005986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.326 6.326 3 C 0.075 3.925 4 C -0.186 4.186 5 C -0.159 4.159 6 C 0.112 3.888 7 O -0.208 6.208 8 C -0.386 4.386 9 H 0.104 0.896 10 C 0.063 3.937 11 N -0.882 5.882 12 Si 0.904 3.096 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.257 1.257 16 C 0.097 3.903 17 O -0.268 6.268 18 C 0.006 3.994 19 C -0.189 4.189 20 C -0.175 4.175 21 C -0.196 4.196 22 H 0.090 0.910 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.120 0.880 26 H 0.145 0.855 27 H 0.279 0.721 28 H 0.123 0.877 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.578 -14.800 0.349 14.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.241 6.241 3 C 0.030 3.970 4 C -0.205 4.205 5 C -0.178 4.178 6 C 0.060 3.940 7 O -0.114 6.114 8 C -0.462 4.462 9 H 0.122 0.878 10 C -0.139 4.139 11 N -0.520 5.520 12 Si 0.729 3.271 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.181 1.181 16 C 0.051 3.949 17 O -0.181 6.181 18 C -0.051 4.051 19 C -0.226 4.226 20 C -0.212 4.212 21 C -0.216 4.216 22 H 0.109 0.891 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.138 0.862 26 H 0.162 0.838 27 H 0.089 0.911 28 H 0.140 0.860 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.011 -14.496 0.384 14.640 hybrid contribution 0.226 0.265 0.098 0.362 sum 2.237 -14.231 0.482 14.414 Atomic orbital electron populations 1.22894 0.79428 1.02816 1.01152 1.85939 1.20465 1.27456 1.90206 1.18268 0.91212 0.83720 1.03751 1.20854 0.99113 0.91761 1.08822 1.20891 0.93076 0.98145 1.05725 1.18292 0.90055 0.84891 1.00747 1.83677 1.35502 1.10959 1.81300 1.20735 0.93580 0.82127 1.49735 0.87839 1.24419 1.00025 0.93648 0.95856 1.69663 1.36018 0.98180 1.48162 0.86186 0.83637 0.77975 0.79259 1.19909 1.20976 1.18075 1.17772 0.81631 0.91159 1.04306 1.86161 1.15210 1.29097 1.87648 1.22951 0.88416 0.88824 1.04908 1.23429 1.02299 1.03018 0.93853 1.23316 0.97477 1.03838 0.96618 1.19850 0.92311 0.96106 1.13297 0.89117 0.93084 0.93092 0.86239 0.83787 0.91144 0.86009 0.87952 0.88137 0.87916 0.87870 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.37 16 2 O -0.33 -5.17 10.49 -19.53 -0.20 -5.37 16 3 C 0.07 1.36 6.69 -39.20 -0.26 1.09 16 4 C -0.19 -3.44 9.03 -39.42 -0.36 -3.80 16 5 C -0.16 -3.45 9.12 -39.44 -0.36 -3.81 16 6 C 0.11 2.68 6.66 -38.97 -0.26 2.42 16 7 O -0.21 -5.71 8.37 -14.62 -0.12 -5.83 16 8 C -0.39 -11.05 9.90 30.88 0.31 -10.74 16 9 H 0.10 2.97 5.53 -52.49 -0.29 2.68 16 10 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 11 N -0.88 -25.74 13.96 55.48 0.77 -24.96 16 12 Si 0.90 22.44 28.62 -169.99 -4.86 17.58 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.26 -6.52 7.11 56.52 0.40 -6.12 16 16 C 0.10 2.06 6.69 -39.07 -0.26 1.80 16 17 O -0.27 -5.55 10.17 -34.05 -0.35 -5.90 16 18 C 0.01 0.09 6.10 -26.73 -0.16 -0.07 16 19 C -0.19 -2.39 10.48 -26.73 -0.28 -2.67 16 20 C -0.18 -2.22 10.48 -26.73 -0.28 -2.50 16 21 C -0.20 -3.63 9.04 -39.32 -0.36 -3.98 16 22 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 24 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 25 H 0.12 1.85 6.28 -52.49 -0.33 1.52 16 26 H 0.14 3.20 5.71 -52.49 -0.30 2.90 16 27 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.12 1.63 5.55 -51.93 -0.29 1.34 16 29 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.10 1.40 8.14 -51.92 -0.42 0.98 16 33 H 0.13 2.07 5.68 -52.48 -0.30 1.77 16 LS Contribution 285.52 15.07 4.30 4.30 Total: -1.00 -31.53 285.52 -5.39 -36.92 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -3.55 Total: 2.45 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -1.38 Total: -19.18 kcal Atomic # 7 Polarization: -25.74 SS G_CDS: 0.77 Total: -24.96 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.67 Total: -17.11 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.86 Total: 17.58 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.53 -5.39 -36.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687815280.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.730 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds