Wall clock time and date at job start Mon Mar 30 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35933 * 117.00506 * 2 1 4 4 C 1.38820 * 119.95773 * 0.02562 * 3 2 1 5 5 C 1.38098 * 120.11224 * 180.02562 * 4 3 2 6 6 C 1.38770 * 120.03961 * 359.97128 * 5 4 3 7 7 O 1.35839 * 120.03543 * 179.72489 * 6 5 4 8 8 C 1.34791 * 116.99997 * 353.94949 * 7 6 5 9 9 H 1.07993 * 120.00301 * 354.70064 * 8 7 6 10 10 C 1.38625 * 119.99761 * 174.69550 * 8 7 6 11 11 N 1.31582 * 119.99861 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99763 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47652 * 89.99967 * 12 10 8 14 14 H 1.48510 * 109.46769 * 209.99648 * 12 10 8 15 15 H 1.48495 * 109.47308 * 329.99203 * 12 10 8 16 16 C 1.39357 * 119.92530 * 0.02562 * 6 5 4 17 17 O 1.35940 * 120.05913 * 179.97438 * 16 6 5 18 18 C 1.42897 * 117.00152 * 186.03831 * 17 16 6 19 19 C 1.53007 * 117.49513 * 225.42300 * 18 17 16 20 20 C 1.52994 * 60.00130 * 252.50908 * 19 18 17 21 21 C 1.38504 * 119.88627 * 0.04223 * 16 6 5 22 22 H 1.08998 * 109.47316 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47138 * 299.99947 * 1 2 3 24 24 H 1.08999 * 109.46904 * 59.99700 * 1 2 3 25 25 H 1.07992 * 119.94485 * 359.97438 * 4 3 2 26 26 H 1.08001 * 119.98255 * 179.97438 * 5 4 3 27 27 H 0.97005 * 119.99906 * 179.97438 * 11 10 8 28 28 H 1.08996 * 115.55221 * 11.13043 * 18 17 16 29 29 H 1.09004 * 117.50111 * 0.02562 * 19 18 17 30 30 H 1.09001 * 117.49677 * 145.01645 * 19 18 17 31 31 H 1.08994 * 117.50424 * 252.51370 * 20 19 18 32 32 H 1.09010 * 117.49849 * 107.48811 * 20 19 18 33 33 H 1.08004 * 120.02066 * 179.97438 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2894 2.3749 0.0005 5 6 1.9131 3.6070 0.0000 6 6 3.2987 3.6842 -0.0005 7 8 3.9121 4.8961 -0.0066 8 6 3.1229 5.9808 -0.1387 9 1 2.0650 5.8602 -0.3192 10 6 3.6692 7.2513 -0.0427 11 7 2.8988 8.3101 -0.1720 12 14 5.4991 7.4599 0.2690 13 1 6.2188 7.5186 -1.0286 14 1 5.7326 8.7185 1.0219 15 1 6.0007 6.3087 1.0617 16 6 4.0600 2.5169 -0.0009 17 8 5.4175 2.5894 -0.0019 18 6 6.1327 1.3596 -0.1363 19 6 7.3171 1.1249 0.8036 20 6 7.5629 1.4294 -0.6755 21 6 3.4312 1.2828 -0.0018 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2110 2.3166 0.0005 26 1 1.3223 4.5110 0.0000 27 1 3.2810 9.1991 -0.1045 28 1 5.5315 0.4941 -0.4147 29 1 7.5504 1.9084 1.5246 30 1 7.4951 0.1048 1.1438 31 1 7.9026 0.6097 -1.3084 32 1 7.9581 2.4135 -0.9279 33 1 4.0191 0.3768 -0.0026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687815280.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:40 Heat of formation + Delta-G solvation = -53.510096 kcal Electronic energy + Delta-G solvation = -18007.476665 eV Core-core repulsion = 15000.894527 eV Total energy + Delta-G solvation = -3006.582138 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.61333 -39.99114 -39.67104 -37.17737 -35.87421 -34.39084 -31.47018 -30.06628 -27.97943 -27.05357 -24.82241 -23.36023 -22.80575 -22.14032 -20.19763 -19.82262 -18.54655 -17.72883 -17.31640 -16.70557 -16.27800 -16.13092 -15.85659 -15.67539 -15.22431 -15.03502 -14.92219 -14.29496 -14.02167 -13.45035 -13.17260 -13.10162 -12.77192 -12.74024 -12.45255 -12.25078 -11.99356 -11.64622 -11.40728 -11.38673 -10.92112 -10.79629 -9.49859 -8.57888 -8.48859 -6.16146 0.31547 0.55668 1.28883 1.33076 1.51529 2.08891 2.29271 2.45784 2.63437 2.84869 3.03413 3.05942 3.65633 3.94575 3.99394 4.02993 4.08930 4.26320 4.43961 4.46700 4.49222 4.57954 4.70882 4.75422 4.81010 4.91160 4.98285 5.19639 5.29359 5.40972 5.56657 5.60204 5.99381 6.41522 6.57123 6.86596 7.64396 8.62844 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.015782 B = 0.008520 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.722900 B = 3285.441989 C = 4969.005986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.327 6.327 3 C 0.102 3.898 4 C -0.190 4.190 5 C -0.159 4.159 6 C 0.059 3.941 7 O -0.241 6.241 8 C -0.393 4.393 9 H 0.085 0.915 10 C 0.013 3.987 11 N -0.922 5.922 12 Si 0.964 3.036 13 H -0.268 1.268 14 H -0.265 1.265 15 H -0.271 1.271 16 C 0.101 3.899 17 O -0.301 6.301 18 C -0.031 4.031 19 C -0.175 4.175 20 C -0.165 4.165 21 C -0.196 4.196 22 H 0.125 0.875 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.153 0.847 26 H 0.128 0.872 27 H 0.284 0.716 28 H 0.143 0.857 29 H 0.087 0.913 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.087 0.913 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 -18.241 0.427 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.241 6.241 3 C 0.056 3.944 4 C -0.209 4.209 5 C -0.179 4.179 6 C 0.010 3.990 7 O -0.150 6.150 8 C -0.470 4.470 9 H 0.103 0.897 10 C -0.185 4.185 11 N -0.564 5.564 12 Si 0.787 3.213 13 H -0.193 1.193 14 H -0.190 1.190 15 H -0.196 1.196 16 C 0.055 3.945 17 O -0.215 6.215 18 C -0.086 4.086 19 C -0.212 4.212 20 C -0.202 4.202 21 C -0.215 4.215 22 H 0.143 0.857 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.170 0.830 26 H 0.145 0.855 27 H 0.093 0.907 28 H 0.160 0.840 29 H 0.105 0.895 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.105 0.895 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.429 -17.988 0.461 18.158 hybrid contribution -0.049 0.914 0.067 0.917 sum 2.380 -17.075 0.527 17.248 Atomic orbital electron populations 1.23321 0.76715 1.05532 1.02001 1.85971 1.23150 1.25656 1.89372 1.18428 0.91323 0.84535 1.00095 1.21102 1.00868 0.90528 1.08364 1.20927 0.92468 0.99101 1.05367 1.18864 0.91526 0.84751 1.03818 1.83614 1.35684 1.11577 1.84135 1.20730 0.93137 0.83288 1.49835 0.89730 1.25126 1.03879 0.93380 0.96141 1.69729 1.37563 0.98645 1.50418 0.85309 0.78969 0.77819 0.79194 1.19269 1.18952 1.19625 1.17923 0.82334 0.91116 1.03081 1.86109 1.15011 1.32665 1.87721 1.23481 0.89329 0.87689 1.08148 1.23538 0.99665 1.04479 0.93507 1.23459 0.94982 1.04348 0.97382 1.20164 0.92948 0.96094 1.12309 0.85660 0.92204 0.92215 0.82986 0.85459 0.90668 0.83958 0.89479 0.84625 0.84421 0.89471 0.81839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.33 -8.97 10.49 -92.79 -0.97 -9.94 16 3 C 0.10 3.39 6.69 22.52 0.15 3.54 16 4 C -0.19 -6.70 9.03 22.38 0.20 -6.50 16 5 C -0.16 -7.10 9.12 22.36 0.20 -6.90 16 6 C 0.06 2.92 6.66 22.67 0.15 3.07 16 7 O -0.24 -13.94 8.37 -9.47 -0.08 -14.02 16 8 C -0.39 -23.84 9.90 67.91 0.67 -23.17 16 9 H 0.09 5.24 5.53 -2.91 -0.02 5.22 16 10 C 0.01 0.77 5.49 84.82 0.47 1.24 16 11 N -0.92 -55.98 13.96 21.61 0.30 -55.68 16 12 Si 0.96 48.01 28.62 68.60 1.96 49.97 16 13 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 14 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 15 H -0.27 -13.98 7.11 99.48 0.71 -13.27 16 16 C 0.10 4.32 6.69 22.60 0.15 4.47 16 17 O -0.30 -12.54 10.17 -79.01 -0.80 -13.34 16 18 C -0.03 -0.88 6.10 30.60 0.19 -0.69 16 19 C -0.17 -3.97 10.48 30.59 0.32 -3.65 16 20 C -0.16 -3.78 10.48 30.59 0.32 -3.46 16 21 C -0.20 -6.81 9.04 22.44 0.20 -6.60 16 22 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.06 1.04 7.66 -2.39 -0.02 1.02 16 24 H 0.06 1.04 7.66 -2.39 -0.02 1.02 16 25 H 0.15 4.28 6.28 -2.91 -0.02 4.26 16 26 H 0.13 6.03 5.71 -2.91 -0.02 6.01 16 27 H 0.28 15.83 8.31 -92.70 -0.77 15.06 16 28 H 0.14 3.33 5.55 -2.39 -0.01 3.32 16 29 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.16 4.53 5.68 -2.91 -0.02 4.51 16 Total: -1.00 -72.14 285.52 5.68 -66.45 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 1.14 Total: 13.76 kcal Atomic # 6 Polarization: -41.35 SS G_CDS: 4.14 Total: -37.21 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.30 Total: -55.68 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -1.86 Total: -37.30 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.96 Total: 49.97 kcal Total: -72.14 5.68 -66.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687815280.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.944 kcal (2) G-P(sol) polarization free energy of solvation -72.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds