Wall clock time and date at job start Mon Mar 30 2020 06:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86795 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47435 * 270.00370 * 3 2 1 5 5 H 1.48504 * 109.47046 * 30.00824 * 3 2 1 6 6 H 1.48500 * 109.46938 * 150.00460 * 3 2 1 7 7 C 1.39883 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99915 * 193.51713 * 7 2 1 9 9 C 1.41207 * 120.00209 * 13.51478 * 7 2 1 10 10 C 1.40858 * 120.16723 * 206.38474 * 9 7 2 11 11 C 1.36457 * 119.84618 * 179.76086 * 10 9 7 12 12 C 1.39258 * 120.20970 * 0.51271 * 11 10 9 13 13 O 1.35707 * 119.82922 * 179.75793 * 12 11 10 14 14 C 1.42900 * 117.00252 * 5.48362 * 13 12 11 15 15 C 1.54886 * 110.48732 * 271.68065 * 14 13 12 16 16 C 1.54887 * 102.75079 * 203.38034 * 15 14 13 17 17 C 1.54265 * 104.19850 * 37.93658 * 16 15 14 18 18 C 1.53872 * 106.59645 * 336.39596 * 17 16 15 19 19 C 1.39519 * 120.34193 * 359.48496 * 12 11 10 20 20 F 1.35098 * 119.93037 * 180.27551 * 19 12 11 21 21 C 1.36608 * 120.14426 * 0.25182 * 19 12 11 22 22 H 0.96995 * 119.99618 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.07378 * 0.02562 * 10 9 7 24 24 H 1.08004 * 119.89431 * 180.27354 * 11 10 9 25 25 H 1.09001 * 110.53596 * 34.28896 * 14 13 12 26 26 H 1.08993 * 110.75973 * 85.05916 * 15 14 13 27 27 H 1.08999 * 110.75571 * 321.69041 * 15 14 13 28 28 H 1.09002 * 110.48081 * 279.25907 * 16 15 14 29 29 H 1.09000 * 110.48918 * 156.61928 * 16 15 14 30 30 H 1.09004 * 110.03006 * 95.67850 * 17 16 15 31 31 H 1.09002 * 110.03537 * 217.06105 * 17 16 15 32 32 H 1.09002 * 110.03722 * 119.28155 * 18 17 16 33 33 H 1.09009 * 110.03305 * 240.66467 * 18 17 16 34 34 H 1.08007 * 120.10396 * 179.97438 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4903 2.0465 -1.4000 5 1 1.4404 2.6526 0.7002 6 1 3.5405 1.4400 0.6999 7 6 2.0082 -1.2114 -0.0005 8 1 3.0658 -1.2245 0.2181 9 6 1.3315 -2.4173 -0.2869 10 6 1.8144 -3.6383 0.2230 11 6 1.1526 -4.7991 -0.0537 12 6 0.0081 -4.7811 -0.8469 13 8 -0.6413 -5.9407 -1.1213 14 6 -0.1674 -7.1200 -0.4679 15 6 0.9499 -7.7914 -1.3044 16 6 0.9015 -9.2623 -0.8214 17 6 -0.6020 -9.5469 -0.6256 18 6 -1.2816 -8.1849 -0.4009 19 6 -0.4776 -3.5765 -1.3563 20 9 -1.5917 -3.5680 -2.1203 21 6 0.1708 -2.4053 -1.0837 22 1 -0.4849 0.8400 0.0004 23 1 2.7041 -3.6552 0.8351 24 1 1.5197 -5.7352 0.3405 25 1 0.1949 -6.8834 0.5325 26 1 1.9191 -7.3442 -1.0842 27 1 0.7267 -7.7271 -2.3694 28 1 1.4365 -9.3717 0.1219 29 1 1.3201 -9.9262 -1.5777 30 1 -1.0103 -10.0257 -1.5157 31 1 -0.7506 -10.1872 0.2439 32 1 -2.0198 -8.0025 -1.1818 33 1 -1.7609 -8.1636 0.5779 34 1 -0.2055 -1.4732 -1.4787 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706641866.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:45 Heat of formation + Delta-G solvation = -83.057049 kcal Electronic energy + Delta-G solvation = -17961.311432 eV Core-core repulsion = 14965.820832 eV Total energy + Delta-G solvation = -2995.490600 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.54288 -39.26893 -37.25731 -35.67270 -33.34341 -29.40941 -29.30244 -28.56419 -27.62351 -24.93594 -21.93235 -20.90663 -20.43349 -19.73802 -17.73619 -17.30892 -15.72985 -15.64286 -15.18077 -14.78825 -14.66424 -14.37617 -13.72438 -13.37442 -13.18837 -12.93428 -12.54265 -12.10903 -11.89833 -11.60775 -11.26090 -11.19706 -11.10304 -11.03159 -10.87507 -10.56981 -10.50521 -10.33556 -9.92158 -9.80738 -9.68869 -9.13488 -7.58424 -7.07267 -6.77750 -4.40850 2.62216 2.73280 3.04957 3.08211 3.11567 3.88616 4.02852 4.49028 4.66855 4.72681 4.98414 5.40421 5.46535 5.50909 5.56868 5.58776 5.66982 5.73450 5.90440 5.96639 6.01731 6.08396 6.23396 6.34445 6.34744 6.51069 6.80452 6.91166 7.06621 7.23934 7.44925 7.59731 7.78006 8.08145 8.32979 8.54350 8.77189 8.82237 10.13975 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.044765 B = 0.005133 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.345076 B = 5453.297939 C = 5881.886945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.072 3.928 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.107 3.893 10 C -0.201 4.201 11 C -0.144 4.144 12 C -0.038 4.038 13 O -0.313 6.313 14 C 0.085 3.915 15 C -0.147 4.147 16 C -0.123 4.123 17 C -0.120 4.120 18 C -0.122 4.122 19 C 0.092 3.908 20 F -0.160 7.160 21 C -0.172 4.172 22 H 0.283 0.717 23 H 0.102 0.898 24 H 0.106 0.894 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.943 -10.595 -0.076 10.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.145 4.145 3 Si 0.738 3.262 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.104 3.896 10 C -0.221 4.221 11 C -0.163 4.163 12 C -0.082 4.082 13 O -0.229 6.229 14 C 0.028 3.972 15 C -0.185 4.185 16 C -0.161 4.161 17 C -0.158 4.158 18 C -0.159 4.159 19 C 0.072 3.928 20 F -0.139 7.139 21 C -0.192 4.192 22 H 0.094 0.906 23 H 0.120 0.880 24 H 0.124 0.876 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.531 -10.453 -0.208 10.468 hybrid contribution 0.303 0.745 0.130 0.814 sum 0.834 -9.708 -0.078 9.744 Atomic orbital electron populations 1.69802 1.07537 1.29430 1.35429 1.25941 0.94835 1.01481 0.92291 0.86221 0.80304 0.80316 0.79354 1.19228 1.20248 1.18593 1.19498 0.96768 0.90483 1.41883 0.90051 1.17368 0.90923 0.92504 0.88816 1.20668 1.02873 0.92507 1.06010 1.20342 0.96041 0.98316 1.01588 1.18493 0.97417 0.84231 1.08091 1.85937 1.56670 1.13864 1.66429 1.23033 0.93894 0.84405 0.95887 1.23029 0.99387 0.95011 1.01052 1.22277 0.96252 0.96479 1.01097 1.22071 0.95546 0.96642 1.01531 1.22148 0.98046 0.93165 1.02558 1.16812 0.86080 0.92362 0.97528 1.91339 1.50948 1.97438 1.74164 1.21050 0.99801 0.95383 1.03001 0.90642 0.88031 0.87603 0.90987 0.91076 0.90586 0.91594 0.91576 0.91688 0.91791 0.90552 0.91336 0.84341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.48 10.82 55.54 0.60 -19.88 16 2 C 0.07 1.77 5.21 -17.34 -0.09 1.68 16 3 Si 0.91 18.32 29.58 -169.99 -5.03 13.29 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.46 -11.77 9.05 -37.84 -0.34 -12.12 16 8 H 0.08 1.99 7.88 -52.48 -0.41 1.57 16 9 C 0.11 2.79 5.57 -106.81 -0.59 2.20 16 10 C -0.20 -4.75 9.74 -39.23 -0.38 -5.14 16 11 C -0.14 -3.18 8.72 -39.84 -0.35 -3.53 16 12 C -0.04 -0.90 6.69 -38.73 -0.26 -1.16 16 13 O -0.31 -6.71 9.70 -18.82 -0.18 -6.89 16 14 C 0.09 1.40 2.68 -25.07 -0.07 1.33 16 15 C -0.15 -2.10 6.33 -24.74 -0.16 -2.26 16 16 C -0.12 -1.36 6.83 -25.07 -0.17 -1.53 16 17 C -0.12 -1.29 6.80 -25.62 -0.17 -1.47 16 18 C -0.12 -1.64 6.56 -25.62 -0.17 -1.81 16 19 C 0.09 2.36 7.26 -39.69 -0.29 2.07 16 20 F -0.16 -4.05 17.10 2.25 0.04 -4.01 16 21 C -0.17 -4.58 8.59 -39.20 -0.34 -4.92 16 22 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 23 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 24 H 0.11 2.00 5.39 -52.48 -0.28 1.72 16 25 H 0.07 1.18 6.31 -51.93 -0.33 0.86 16 26 H 0.07 1.03 7.49 -51.93 -0.39 0.64 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 33 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.14 3.81 6.13 -52.48 -0.32 3.49 16 LS Contribution 285.04 15.07 4.30 4.30 Total: -1.00 -27.65 285.04 -7.90 -35.56 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.25 Total: 4.28 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: -3.38 Total: -26.64 kcal Atomic # 7 Polarization: -20.48 SS G_CDS: 0.60 Total: -19.88 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.18 Total: -6.89 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.04 Total: -4.01 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.65 -7.90 -35.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706641866.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.502 kcal (2) G-P(sol) polarization free energy of solvation -27.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds