Wall clock time and date at job start Mon Mar 30 2020 06:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86795 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47435 * 270.00370 * 3 2 1 5 5 H 1.48504 * 109.47046 * 30.00824 * 3 2 1 6 6 H 1.48500 * 109.46938 * 150.00460 * 3 2 1 7 7 C 1.39883 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99915 * 193.51713 * 7 2 1 9 9 C 1.41207 * 120.00209 * 13.51478 * 7 2 1 10 10 C 1.40858 * 120.16723 * 206.38474 * 9 7 2 11 11 C 1.36457 * 119.84618 * 179.76086 * 10 9 7 12 12 C 1.39258 * 120.20970 * 0.51271 * 11 10 9 13 13 O 1.35707 * 119.82922 * 179.75793 * 12 11 10 14 14 C 1.42900 * 117.00252 * 5.48362 * 13 12 11 15 15 C 1.54886 * 110.48732 * 271.68065 * 14 13 12 16 16 C 1.54887 * 102.75079 * 203.38034 * 15 14 13 17 17 C 1.54265 * 104.19850 * 37.93658 * 16 15 14 18 18 C 1.53872 * 106.59645 * 336.39596 * 17 16 15 19 19 C 1.39519 * 120.34193 * 359.48496 * 12 11 10 20 20 F 1.35098 * 119.93037 * 180.27551 * 19 12 11 21 21 C 1.36608 * 120.14426 * 0.25182 * 19 12 11 22 22 H 0.96995 * 119.99618 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.07378 * 0.02562 * 10 9 7 24 24 H 1.08004 * 119.89431 * 180.27354 * 11 10 9 25 25 H 1.09001 * 110.53596 * 34.28896 * 14 13 12 26 26 H 1.08993 * 110.75973 * 85.05916 * 15 14 13 27 27 H 1.08999 * 110.75571 * 321.69041 * 15 14 13 28 28 H 1.09002 * 110.48081 * 279.25907 * 16 15 14 29 29 H 1.09000 * 110.48918 * 156.61928 * 16 15 14 30 30 H 1.09004 * 110.03006 * 95.67850 * 17 16 15 31 31 H 1.09002 * 110.03537 * 217.06105 * 17 16 15 32 32 H 1.09002 * 110.03722 * 119.28155 * 18 17 16 33 33 H 1.09009 * 110.03305 * 240.66467 * 18 17 16 34 34 H 1.08007 * 120.10396 * 179.97438 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4903 2.0465 -1.4000 5 1 1.4404 2.6526 0.7002 6 1 3.5405 1.4400 0.6999 7 6 2.0082 -1.2114 -0.0005 8 1 3.0658 -1.2245 0.2181 9 6 1.3315 -2.4173 -0.2869 10 6 1.8144 -3.6383 0.2230 11 6 1.1526 -4.7991 -0.0537 12 6 0.0081 -4.7811 -0.8469 13 8 -0.6413 -5.9407 -1.1213 14 6 -0.1674 -7.1200 -0.4679 15 6 0.9499 -7.7914 -1.3044 16 6 0.9015 -9.2623 -0.8214 17 6 -0.6020 -9.5469 -0.6256 18 6 -1.2816 -8.1849 -0.4009 19 6 -0.4776 -3.5765 -1.3563 20 9 -1.5917 -3.5680 -2.1203 21 6 0.1708 -2.4053 -1.0837 22 1 -0.4849 0.8400 0.0004 23 1 2.7041 -3.6552 0.8351 24 1 1.5197 -5.7352 0.3405 25 1 0.1949 -6.8834 0.5325 26 1 1.9191 -7.3442 -1.0842 27 1 0.7267 -7.7271 -2.3694 28 1 1.4365 -9.3717 0.1219 29 1 1.3201 -9.9262 -1.5777 30 1 -1.0103 -10.0257 -1.5157 31 1 -0.7506 -10.1872 0.2439 32 1 -2.0198 -8.0025 -1.1818 33 1 -1.7609 -8.1636 0.5779 34 1 -0.2055 -1.4732 -1.4787 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706641866.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:44 Heat of formation + Delta-G solvation = -96.590992 kcal Electronic energy + Delta-G solvation = -17961.898308 eV Core-core repulsion = 14965.820832 eV Total energy + Delta-G solvation = -2996.077476 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.54995 -40.81604 -38.85658 -37.13506 -35.18867 -31.26186 -31.12831 -29.64767 -28.88526 -26.76950 -23.65304 -22.74632 -21.54271 -21.01718 -19.57657 -18.94658 -17.62665 -17.19248 -16.62345 -16.52442 -16.31571 -15.93857 -15.34815 -14.97328 -14.80295 -14.23444 -14.13338 -13.63963 -13.60219 -13.15738 -12.94428 -12.77258 -12.55967 -12.20127 -12.10389 -12.01317 -11.87153 -11.69449 -11.43580 -11.40236 -11.23177 -10.92037 -9.52100 -8.96526 -8.62911 -6.35405 0.72460 0.83527 1.40764 1.50118 1.54879 2.20756 2.50186 2.64798 3.51940 3.62521 3.67715 3.70616 3.97050 4.22807 4.26650 4.49056 4.54580 4.56723 4.61531 4.77740 4.90077 4.92108 4.99258 5.05612 5.11097 5.18897 5.24650 5.26671 5.39469 5.45451 5.55987 5.69534 5.87793 6.13129 6.45270 6.70563 6.85449 6.96204 8.31702 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.044765 B = 0.005133 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.345076 B = 5453.297939 C = 5881.886945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.029 3.971 3 Si 0.989 3.011 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.486 4.486 8 H 0.089 0.911 9 C 0.078 3.922 10 C -0.201 4.201 11 C -0.135 4.135 12 C -0.031 4.031 13 O -0.331 6.331 14 C 0.068 3.932 15 C -0.147 4.147 16 C -0.115 4.115 17 C -0.114 4.114 18 C -0.121 4.121 19 C 0.065 3.935 20 F -0.165 7.165 21 C -0.194 4.194 22 H 0.289 0.711 23 H 0.123 0.877 24 H 0.143 0.857 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.224 -12.156 0.790 12.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.515 4.515 8 H 0.107 0.893 9 C 0.075 3.925 10 C -0.220 4.220 11 C -0.154 4.154 12 C -0.076 4.076 13 O -0.247 6.247 14 C 0.011 3.989 15 C -0.185 4.185 16 C -0.153 4.153 17 C -0.151 4.151 18 C -0.159 4.159 19 C 0.045 3.955 20 F -0.145 7.145 21 C -0.215 4.215 22 H 0.099 0.901 23 H 0.141 0.859 24 H 0.160 0.840 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.809 -12.047 0.660 12.200 hybrid contribution -0.149 1.085 -0.138 1.104 sum 1.660 -10.962 0.522 11.099 Atomic orbital electron populations 1.69882 1.09226 1.30713 1.36055 1.26868 0.95512 1.04935 0.91153 0.85087 0.79066 0.75439 0.79443 1.18883 1.19543 1.17551 1.19815 0.97298 0.91280 1.43142 0.89254 1.17723 0.91255 0.94027 0.89450 1.20972 1.03394 0.92118 1.05518 1.20654 0.94967 0.99364 1.00408 1.18585 0.97460 0.84523 1.06993 1.85929 1.57099 1.14451 1.67264 1.23533 0.96105 0.83225 0.95989 1.23017 0.98180 0.97308 1.00019 1.22280 0.96730 0.94057 1.02207 1.22078 0.94929 0.95066 1.03071 1.22211 0.97152 0.93773 1.02736 1.17078 0.86429 0.93374 0.98589 1.91304 1.51229 1.97525 1.74397 1.20940 1.01012 0.95059 1.04448 0.90062 0.85884 0.83986 0.90749 0.91333 0.91823 0.90193 0.89816 0.90755 0.89519 0.91802 0.90381 0.86351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.06 10.82 21.82 0.24 -43.82 16 2 C 0.03 1.47 5.21 85.23 0.44 1.91 16 3 Si 0.99 37.49 29.58 68.60 2.03 39.52 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 6 H -0.25 -9.07 7.11 99.48 0.71 -8.37 16 7 C -0.49 -25.38 9.05 23.40 0.21 -25.17 16 8 H 0.09 4.36 7.88 -2.91 -0.02 4.33 16 9 C 0.08 4.17 5.57 -21.28 -0.12 4.05 16 10 C -0.20 -9.37 9.74 22.50 0.22 -9.15 16 11 C -0.14 -5.82 8.72 22.10 0.19 -5.63 16 12 C -0.03 -1.46 6.69 22.82 0.15 -1.31 16 13 O -0.33 -14.11 9.70 -90.27 -0.88 -14.99 16 14 C 0.07 2.11 2.68 31.67 0.08 2.20 16 15 C -0.15 -3.90 6.33 31.88 0.20 -3.70 16 16 C -0.12 -2.12 6.83 31.67 0.22 -1.90 16 17 C -0.11 -2.04 6.80 31.32 0.21 -1.83 16 18 C -0.12 -3.02 6.56 31.32 0.21 -2.81 16 19 C 0.06 3.44 7.26 22.20 0.16 3.60 16 20 F -0.17 -8.73 17.10 44.97 0.77 -7.96 16 21 C -0.19 -10.78 8.59 22.51 0.19 -10.59 16 22 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 23 H 0.12 5.13 8.06 -2.91 -0.02 5.10 16 24 H 0.14 4.99 5.39 -2.91 -0.02 4.97 16 25 H 0.07 2.28 6.31 -2.39 -0.02 2.26 16 26 H 0.07 1.82 7.49 -2.39 -0.02 1.81 16 27 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.74 8.07 -2.39 -0.02 1.72 16 33 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.12 6.92 6.13 -2.91 -0.02 6.91 16 Total: -1.00 -61.14 285.04 5.64 -55.50 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 1.10 Total: 22.08 kcal Atomic # 6 Polarization: -52.71 SS G_CDS: 2.38 Total: -50.33 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.24 Total: -43.82 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.88 Total: -14.99 kcal Atomic # 9 Polarization: -8.73 SS G_CDS: 0.77 Total: -7.96 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Total: -61.14 5.64 -55.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706641866.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.093 kcal (2) G-P(sol) polarization free energy of solvation -61.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds