Wall clock time and date at job start Mon Mar 30 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47229 * 2 1 4 4 C 1.53004 * 109.46610 * 240.00723 * 2 1 3 5 5 C 1.50701 * 109.46799 * 174.99925 * 4 2 1 6 6 H 1.07995 * 120.00010 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99783 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00021 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99903 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47210 * 89.99991 * 9 7 5 11 11 H 1.48500 * 109.47174 * 209.99521 * 9 7 5 12 12 H 1.48492 * 109.47461 * 329.99909 * 9 7 5 13 13 O 1.42894 * 109.47465 * 120.00899 * 2 1 3 14 14 C 1.35984 * 116.99606 * 275.25337 * 13 2 1 15 15 C 1.38697 * 119.98746 * 5.36793 * 14 13 2 16 16 C 1.38210 * 120.08519 * 179.97438 * 15 14 13 17 17 C 1.38531 * 120.09953 * 0.02562 * 16 15 14 18 18 C 1.39255 * 119.91621 * 0.02562 * 17 16 15 19 19 C 1.38527 * 119.88279 * 359.70399 * 18 17 16 20 20 O 1.36513 * 108.64486 * 179.97438 * 18 17 16 21 21 C 1.43978 * 105.49990 * 342.70470 * 20 18 17 22 22 O 1.36606 * 131.46284 * 179.97438 * 17 16 15 23 23 H 1.09009 * 109.46438 * 299.99482 * 1 2 3 24 24 H 1.08999 * 109.47322 * 59.99263 * 1 2 3 25 25 H 1.08998 * 109.47229 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46723 * 294.99511 * 4 2 1 27 27 H 1.08998 * 109.47562 * 54.99610 * 4 2 1 28 28 H 0.97000 * 119.99735 * 180.02562 * 8 7 5 29 29 H 1.08002 * 119.95841 * 359.97438 * 15 14 13 30 30 H 1.08008 * 119.95429 * 179.97438 * 16 15 14 31 31 H 1.07999 * 120.00732 * 180.31455 * 19 18 17 32 32 H 1.09008 * 110.57168 * 268.58375 * 21 20 18 33 33 H 1.09001 * 110.57753 * 145.71085 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5418 -0.6148 -1.3129 6 1 4.0789 -0.0855 -0.5398 7 6 4.2303 -1.1933 -2.3581 8 7 5.5410 -1.1001 -2.4139 9 14 3.3013 -2.1082 -3.6957 10 1 2.9405 -1.1632 -4.7829 11 1 4.1596 -3.1890 -4.2439 12 1 2.0652 -2.6999 -3.1238 13 8 2.0064 -0.6738 1.1666 14 6 2.1076 0.0615 2.3060 15 6 1.6516 1.3711 2.3287 16 6 1.7529 2.1201 3.4859 17 6 2.3108 1.5652 4.6260 18 6 2.7703 0.2508 4.6052 19 6 2.6626 -0.4998 3.4459 20 8 3.2702 -0.0563 5.8379 21 6 3.4858 1.2083 6.4916 22 8 2.5233 2.0819 5.8726 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.7516 -1.7714 -1.2057 27 1 1.6053 -0.2616 -2.1371 28 1 6.0252 -1.5068 -3.1494 29 1 1.2166 1.8062 1.4411 30 1 1.3975 3.1399 3.5011 31 1 3.0137 -1.5210 3.4291 32 1 4.4995 1.5655 6.3098 33 1 3.2945 1.1241 7.5614 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709961208.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:12 Heat of formation + Delta-G solvation = -74.883828 kcal Electronic energy + Delta-G solvation = -17945.159320 eV Core-core repulsion = 14937.650347 eV Total energy + Delta-G solvation = -3007.508972 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.01745 -39.49795 -36.42325 -36.16002 -33.45994 -31.85899 -30.30997 -28.91885 -28.03678 -25.68003 -23.53063 -22.91236 -22.29249 -20.31164 -18.20874 -17.76793 -17.26391 -16.79659 -16.65778 -15.60490 -14.91898 -14.58668 -14.36616 -14.10063 -13.72283 -13.13297 -12.96602 -12.90066 -12.77148 -12.59581 -12.23657 -11.89146 -11.71347 -11.56004 -10.98813 -10.68445 -10.54548 -10.12522 -9.77693 -9.55488 -9.25655 -8.58590 -8.56787 -7.51911 -6.05852 -4.04350 1.29898 1.46562 2.73447 3.27721 3.36426 3.38678 3.42717 3.78956 3.95268 4.42230 4.63030 4.68365 4.87379 5.07167 5.21386 5.28031 5.30789 5.45743 5.53859 5.66019 5.72376 5.91911 6.09517 6.18746 6.25689 6.33220 6.37609 6.49831 6.57577 6.96758 7.10972 7.22933 7.68878 7.96259 8.48900 8.98833 9.54522 11.07602 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.034407 B = 0.005154 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.602952 B = 5431.326222 C = 5862.143422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.095 3.905 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.517 4.517 6 H 0.073 0.927 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.877 3.123 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.265 1.265 13 O -0.283 6.283 14 C 0.168 3.832 15 C -0.208 4.208 16 C -0.056 4.056 17 C -0.028 4.028 18 C 0.072 3.928 19 C -0.142 4.142 20 O -0.310 6.310 21 C 0.214 3.786 22 O -0.313 6.313 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.029 0.971 27 H 0.034 0.966 28 H 0.263 0.737 29 H 0.145 0.855 30 H 0.133 0.867 31 H 0.143 0.857 32 H 0.081 0.919 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 5.234 12.831 16.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.039 3.961 3 H 0.089 0.911 4 C -0.048 4.048 5 C -0.555 4.555 6 H 0.091 0.909 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.704 3.296 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.189 1.189 13 O -0.196 6.196 14 C 0.120 3.880 15 C -0.227 4.227 16 C -0.075 4.075 17 C -0.071 4.071 18 C 0.027 3.973 19 C -0.161 4.161 20 O -0.226 6.226 21 C 0.102 3.898 22 O -0.231 6.231 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.163 0.837 30 H 0.151 0.849 31 H 0.161 0.839 32 H 0.098 0.902 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.091 4.949 12.892 16.005 hybrid contribution -0.189 -0.268 -0.598 0.682 sum -8.280 4.680 12.294 15.543 Atomic orbital electron populations 1.22469 0.96691 1.02843 1.01928 1.22647 0.91776 0.97315 0.84367 0.91108 1.19740 0.98146 0.96577 0.90378 1.21005 0.89329 1.35491 1.09681 0.90853 1.24996 0.94739 0.95751 0.97857 1.69909 1.06555 1.45243 1.32232 0.86823 0.80340 0.80087 0.82315 1.20259 1.21267 1.18942 1.86275 1.79778 1.37686 1.15822 1.18539 0.92292 0.89951 0.87186 1.21133 1.08008 0.94403 0.99141 1.19746 0.99464 0.99917 0.88363 1.19542 1.08100 0.92621 0.86879 1.19266 0.99066 0.92924 0.86003 1.19039 1.07138 1.02062 0.87907 1.87332 1.80984 1.30040 1.24209 1.25537 0.93226 0.73847 0.97157 1.87315 1.60562 1.50845 1.24335 0.92723 0.91195 0.91796 0.95243 0.94787 0.92691 0.83718 0.84883 0.83943 0.90151 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.71 9.17 37.16 0.34 -2.37 16 2 C 0.09 1.80 2.17 -26.73 -0.06 1.74 16 3 H 0.07 1.31 6.32 -51.93 -0.33 0.98 16 4 C -0.01 -0.26 3.75 -27.88 -0.10 -0.36 16 5 C -0.52 -14.49 9.43 -34.44 -0.32 -14.81 16 6 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 9 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 13 O -0.28 -5.75 9.56 -19.69 -0.19 -5.94 16 14 C 0.17 3.00 6.60 -39.26 -0.26 2.74 16 15 C -0.21 -3.19 8.23 -39.42 -0.32 -3.52 16 16 C -0.06 -0.80 10.05 -39.48 -0.40 -1.19 16 17 C -0.03 -0.43 7.15 -39.10 -0.28 -0.71 16 18 C 0.07 1.16 7.15 -39.10 -0.28 0.88 16 19 C -0.14 -2.44 10.00 -39.32 -0.39 -2.83 16 20 O -0.31 -4.52 11.40 -45.73 -0.52 -5.04 16 21 C 0.21 2.34 8.89 101.05 0.90 3.24 16 22 O -0.31 -4.34 11.41 -46.04 -0.53 -4.87 16 23 H 0.05 0.72 6.89 -51.92 -0.36 0.36 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 27 H 0.03 0.74 7.57 -51.93 -0.39 0.35 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.15 1.99 5.41 -52.49 -0.28 1.71 16 30 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 31 H 0.14 2.36 8.06 -52.49 -0.42 1.93 16 32 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 280.96 15.07 4.23 4.23 Total: -1.00 -31.99 280.96 -6.03 -38.02 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -3.86 Total: -0.77 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -1.28 Total: -15.33 kcal Atomic # 7 Polarization: -27.63 SS G_CDS: 0.77 Total: -26.85 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -1.23 Total: -15.84 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.99 -6.03 -38.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709961208.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.863 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds