Wall clock time and date at job start Mon Mar 30 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47229 * 2 1 4 4 C 1.53004 * 109.46610 * 240.00723 * 2 1 3 5 5 C 1.50701 * 109.46799 * 174.99925 * 4 2 1 6 6 H 1.07995 * 120.00010 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99783 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00021 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99903 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47210 * 89.99991 * 9 7 5 11 11 H 1.48500 * 109.47174 * 209.99521 * 9 7 5 12 12 H 1.48492 * 109.47461 * 329.99909 * 9 7 5 13 13 O 1.42894 * 109.47465 * 120.00899 * 2 1 3 14 14 C 1.35984 * 116.99606 * 275.25337 * 13 2 1 15 15 C 1.38697 * 119.98746 * 5.36793 * 14 13 2 16 16 C 1.38210 * 120.08519 * 179.97438 * 15 14 13 17 17 C 1.38531 * 120.09953 * 0.02562 * 16 15 14 18 18 C 1.39255 * 119.91621 * 0.02562 * 17 16 15 19 19 C 1.38527 * 119.88279 * 359.70399 * 18 17 16 20 20 O 1.36513 * 108.64486 * 179.97438 * 18 17 16 21 21 C 1.43978 * 105.49990 * 342.70470 * 20 18 17 22 22 O 1.36606 * 131.46284 * 179.97438 * 17 16 15 23 23 H 1.09009 * 109.46438 * 299.99482 * 1 2 3 24 24 H 1.08999 * 109.47322 * 59.99263 * 1 2 3 25 25 H 1.08998 * 109.47229 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46723 * 294.99511 * 4 2 1 27 27 H 1.08998 * 109.47562 * 54.99610 * 4 2 1 28 28 H 0.97000 * 119.99735 * 180.02562 * 8 7 5 29 29 H 1.08002 * 119.95841 * 359.97438 * 15 14 13 30 30 H 1.08008 * 119.95429 * 179.97438 * 16 15 14 31 31 H 1.07999 * 120.00732 * 180.31455 * 19 18 17 32 32 H 1.09008 * 110.57168 * 268.58375 * 21 20 18 33 33 H 1.09001 * 110.57753 * 145.71085 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5418 -0.6148 -1.3129 6 1 4.0789 -0.0855 -0.5398 7 6 4.2303 -1.1933 -2.3581 8 7 5.5410 -1.1001 -2.4139 9 14 3.3013 -2.1082 -3.6957 10 1 2.9405 -1.1632 -4.7829 11 1 4.1596 -3.1890 -4.2439 12 1 2.0652 -2.6999 -3.1238 13 8 2.0064 -0.6738 1.1666 14 6 2.1076 0.0615 2.3060 15 6 1.6516 1.3711 2.3287 16 6 1.7529 2.1201 3.4859 17 6 2.3108 1.5652 4.6260 18 6 2.7703 0.2508 4.6052 19 6 2.6626 -0.4998 3.4459 20 8 3.2702 -0.0563 5.8379 21 6 3.4858 1.2083 6.4916 22 8 2.5233 2.0819 5.8726 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.7516 -1.7714 -1.2057 27 1 1.6053 -0.2616 -2.1371 28 1 6.0252 -1.5068 -3.1494 29 1 1.2166 1.8062 1.4411 30 1 1.3975 3.1399 3.5011 31 1 3.0137 -1.5210 3.4291 32 1 4.4995 1.5655 6.3098 33 1 3.2945 1.1241 7.5614 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709961208.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:12 Heat of formation + Delta-G solvation = -96.172435 kcal Electronic energy + Delta-G solvation = -17946.082463 eV Core-core repulsion = 14937.650347 eV Total energy + Delta-G solvation = -3008.432115 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.11953 -40.84883 -37.70935 -37.25702 -35.31932 -33.63115 -31.58158 -30.10368 -29.74896 -26.66168 -25.07560 -24.27235 -23.67928 -21.81876 -19.53069 -18.92959 -18.87272 -18.36267 -17.82144 -16.83263 -16.50594 -16.00654 -15.72469 -15.47902 -14.87869 -14.77102 -14.36591 -14.18939 -13.98538 -13.86143 -13.78383 -13.47581 -13.21982 -12.79158 -12.47384 -12.25627 -12.00167 -11.73503 -11.52334 -11.25665 -10.98721 -10.75184 -9.81840 -8.74820 -8.26177 -6.30235 0.08282 0.23011 1.37915 1.41293 1.52369 1.61363 2.33746 2.38593 2.55800 2.74835 3.10681 3.46243 3.83478 3.86354 3.99706 4.06852 4.13020 4.20910 4.27827 4.45222 4.51321 4.65320 4.88910 4.98806 5.01619 5.06690 5.10634 5.18568 5.25890 5.34949 5.40026 5.64603 6.06151 6.26674 6.57906 6.76696 7.32643 8.91113 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.034407 B = 0.005154 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.602952 B = 5431.326222 C = 5862.143422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.093 3.907 3 H 0.070 0.930 4 C -0.012 4.012 5 C -0.523 4.523 6 H 0.026 0.974 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.952 3.048 10 H -0.260 1.260 11 H -0.289 1.289 12 H -0.244 1.244 13 O -0.315 6.315 14 C 0.142 3.858 15 C -0.203 4.203 16 C -0.050 4.050 17 C -0.028 4.028 18 C 0.062 3.938 19 C -0.163 4.163 20 O -0.324 6.324 21 C 0.205 3.795 22 O -0.318 6.318 23 H 0.073 0.927 24 H 0.092 0.908 25 H 0.062 0.938 26 H 0.026 0.974 27 H 0.055 0.945 28 H 0.265 0.735 29 H 0.162 0.838 30 H 0.168 0.832 31 H 0.133 0.867 32 H 0.099 0.901 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.478 6.163 13.016 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.037 3.963 3 H 0.088 0.912 4 C -0.049 4.049 5 C -0.561 4.561 6 H 0.044 0.956 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.775 3.225 10 H -0.184 1.184 11 H -0.215 1.215 12 H -0.168 1.168 13 O -0.229 6.229 14 C 0.096 3.904 15 C -0.221 4.221 16 C -0.069 4.069 17 C -0.072 4.072 18 C 0.018 3.982 19 C -0.182 4.182 20 O -0.240 6.240 21 C 0.094 3.906 22 O -0.235 6.235 23 H 0.092 0.908 24 H 0.110 0.890 25 H 0.081 0.919 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.180 0.820 30 H 0.185 0.815 31 H 0.151 0.849 32 H 0.117 0.883 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.332 5.896 13.107 17.701 hybrid contribution 0.618 -0.486 -0.463 0.913 sum -9.714 5.409 12.644 16.837 Atomic orbital electron populations 1.22379 0.92950 1.03491 1.03983 1.22600 0.94549 0.96356 0.82761 0.91160 1.19725 0.94564 0.97153 0.93493 1.21321 0.92258 1.34379 1.08156 0.95583 1.26041 0.95605 0.96918 1.00913 1.70086 1.08759 1.47087 1.33589 0.85638 0.79301 0.78673 0.78908 1.18432 1.21507 1.16774 1.86191 1.80883 1.39003 1.16787 1.18743 0.93990 0.91155 0.86560 1.21328 1.07265 0.93287 1.00262 1.20100 0.98261 1.01149 0.87363 1.19783 1.07446 0.92252 0.87735 1.19336 0.99316 0.93371 0.86219 1.19104 1.08149 1.02163 0.88806 1.87310 1.80940 1.32156 1.23628 1.26130 0.93701 0.72073 0.98689 1.87301 1.61309 1.51359 1.23558 0.90808 0.88953 0.91871 0.95580 0.92656 0.92620 0.82023 0.81500 0.84867 0.88337 0.81530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.63 9.17 71.98 0.66 -3.97 16 2 C 0.09 3.47 2.17 30.60 0.07 3.53 16 3 H 0.07 2.57 6.32 -2.39 -0.02 2.56 16 4 C -0.01 -0.55 3.75 29.85 0.11 -0.44 16 5 C -0.52 -30.12 9.43 25.60 0.24 -29.88 16 6 H 0.03 1.69 7.99 -2.91 -0.02 1.66 16 7 C 0.00 0.08 5.47 84.66 0.46 0.55 16 8 N -0.95 -60.54 13.96 21.45 0.30 -60.24 16 9 Si 0.95 43.54 27.47 68.60 1.88 45.43 16 10 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.24 -10.28 6.54 99.48 0.65 -9.63 16 13 O -0.31 -13.07 9.56 -93.37 -0.89 -13.96 16 14 C 0.14 5.16 6.60 22.48 0.15 5.31 16 15 C -0.20 -5.98 8.23 22.37 0.18 -5.79 16 16 C -0.05 -1.32 10.05 22.33 0.22 -1.09 16 17 C -0.03 -0.82 7.15 22.58 0.16 -0.66 16 18 C 0.06 2.01 7.15 22.58 0.16 2.17 16 19 C -0.16 -5.80 10.00 22.44 0.22 -5.58 16 20 O -0.32 -9.23 11.40 -76.21 -0.87 -10.10 16 21 C 0.20 4.02 8.89 113.37 1.01 5.03 16 22 O -0.32 -8.09 11.41 -77.29 -0.88 -8.97 16 23 H 0.07 1.72 6.89 -2.38 -0.02 1.70 16 24 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.03 1.19 7.20 -2.38 -0.02 1.17 16 27 H 0.06 2.26 7.57 -2.39 -0.02 2.25 16 28 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 29 H 0.16 4.11 5.41 -2.91 -0.02 4.10 16 30 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 31 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 32 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.17 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -72.07 280.96 4.26 -67.81 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.06 Total: 10.86 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 3.65 Total: -30.83 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.30 Total: -60.24 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -2.64 Total: -33.03 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.43 kcal Total: -72.07 4.26 -67.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709961208.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.359 kcal (2) G-P(sol) polarization free energy of solvation -72.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds