Wall clock time and date at job start Mon Mar 30 2020 06:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35913 * 116.99828 * 180.02562 * 3 2 1 5 5 C 1.38477 * 119.97837 * 0.02562 * 4 3 2 6 6 C 1.39576 * 119.78228 * 179.97438 * 5 4 3 7 7 C 1.47673 * 120.12793 * 180.02562 * 6 5 4 8 8 O 1.21510 * 119.99705 * 0.02562 * 7 6 5 9 9 O 1.34728 * 120.00642 * 180.02562 * 7 6 5 10 10 C 1.34854 * 117.00605 * 179.97438 * 9 7 6 11 11 H 1.08002 * 119.99372 * 0.02562 * 10 9 7 12 12 C 1.38815 * 120.00162 * 179.97438 * 10 9 7 13 13 N 1.31417 * 119.99761 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99851 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.46861 * 60.00105 * 14 12 10 16 16 H 1.48503 * 109.46990 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47027 * 300.00168 * 14 12 10 18 18 C 1.39701 * 119.74807 * 0.02562 * 6 5 4 19 19 C 1.37935 * 119.95625 * 359.97438 * 18 6 5 20 20 C 1.38306 * 120.21608 * 359.74487 * 19 18 6 21 21 C 1.50701 * 119.87234 * 180.25684 * 20 19 18 22 22 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 27 27 H 1.07998 * 120.10836 * 359.95318 * 5 4 3 28 28 H 0.97000 * 119.99531 * 179.97438 * 13 12 10 29 29 H 1.07998 * 120.01872 * 180.02562 * 18 6 5 30 30 H 1.07994 * 119.89250 * 180.02562 * 19 18 6 31 31 H 1.09011 * 109.46904 * 270.25415 * 21 20 19 32 32 H 1.08993 * 109.47375 * 30.25095 * 21 20 19 33 33 H 1.09003 * 109.47077 * 150.25756 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5255 -0.0005 5 6 4.1968 0.4270 -0.0016 6 6 5.5799 0.6147 -0.0027 7 6 6.4861 -0.5513 -0.0044 8 8 6.0280 -1.6768 -0.0053 9 8 7.8208 -0.3673 -0.0049 10 6 8.5915 -1.4740 -0.0060 11 1 8.1325 -2.4516 -0.0067 12 6 9.9747 -1.3565 -0.0071 13 7 10.5331 -0.1669 -0.0066 14 14 11.0421 -2.8895 -0.0092 15 1 10.7494 -3.6947 -1.2221 16 1 12.4740 -2.4956 -0.0096 17 1 10.7515 -3.6967 1.2029 18 6 6.1037 1.9098 -0.0022 19 6 5.2541 2.9964 -0.0011 20 6 3.8838 2.8085 -0.0059 21 6 2.9627 4.0012 -0.0106 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.7856 -0.5716 -0.0012 28 1 11.4996 -0.0849 -0.0071 29 1 7.1732 2.0600 -0.0034 30 1 5.6601 3.9971 -0.0011 31 1 2.7405 4.2927 1.0161 32 1 3.4450 4.8308 -0.5274 33 1 2.0363 3.7428 -0.5235 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733605958.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:17 Heat of formation + Delta-G solvation = -123.441307 kcal Electronic energy + Delta-G solvation = -17658.271778 eV Core-core repulsion = 14648.657196 eV Total energy + Delta-G solvation = -3009.614582 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.60861 -40.73491 -38.51354 -37.30644 -34.43267 -33.97906 -32.58694 -30.80009 -28.87307 -27.20142 -25.13544 -23.74902 -22.71307 -21.73386 -19.97152 -19.61163 -17.80633 -17.17601 -17.15333 -16.81679 -16.61306 -16.28020 -16.05609 -14.98069 -14.76041 -14.54973 -14.43427 -13.67553 -13.58577 -13.42994 -13.34949 -13.16530 -12.80766 -12.70425 -12.40171 -12.36700 -12.18403 -12.12639 -11.97188 -11.70959 -11.19817 -10.75663 -9.94614 -9.23597 -8.61165 -6.38799 -0.31438 0.33081 1.31920 1.36256 1.48524 1.72298 2.04154 2.16596 2.62993 2.68283 2.98693 3.70664 3.86631 4.00719 4.07704 4.10468 4.18644 4.34971 4.43118 4.47326 4.72239 4.80110 4.86996 4.90977 4.93840 5.05248 5.19642 5.27516 5.29372 5.39093 5.43567 5.70546 5.74993 6.29680 6.52221 6.82497 7.65080 8.59071 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.032893 B = 0.005083 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.047344 B = 5506.946168 C = 6332.240690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.040 3.960 3 O -0.310 6.310 4 C 0.114 3.886 5 C -0.161 4.161 6 C -0.093 4.093 7 C 0.429 3.571 8 O -0.583 6.583 9 O -0.227 6.227 10 C -0.425 4.425 11 H 0.082 0.918 12 C 0.000 4.000 13 N -0.894 5.894 14 Si 1.021 2.979 15 H -0.261 1.261 16 H -0.255 1.255 17 H -0.261 1.261 18 C -0.110 4.110 19 C -0.084 4.084 20 C -0.091 4.091 21 C -0.100 4.100 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.095 0.905 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.131 0.869 28 H 0.282 0.718 29 H 0.125 0.875 30 H 0.173 0.827 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.244 7.322 0.017 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.035 4.035 3 O -0.224 6.224 4 C 0.069 3.931 5 C -0.180 4.180 6 C -0.094 4.094 7 C 0.279 3.721 8 O -0.484 6.484 9 O -0.135 6.135 10 C -0.500 4.500 11 H 0.100 0.900 12 C -0.202 4.202 13 N -0.530 5.530 14 Si 0.839 3.161 15 H -0.185 1.185 16 H -0.179 1.179 17 H -0.186 1.186 18 C -0.128 4.128 19 C -0.101 4.101 20 C -0.092 4.092 21 C -0.157 4.157 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.114 0.886 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.149 0.851 28 H 0.092 0.908 29 H 0.143 0.857 30 H 0.191 0.809 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.294 7.300 0.014 16.947 hybrid contribution 0.882 -1.400 0.006 1.654 sum -14.412 5.900 0.020 15.573 Atomic orbital electron populations 1.21762 0.90051 1.04182 1.03800 1.23068 0.97772 0.81091 1.01540 1.86033 1.17243 1.30407 1.88717 1.18655 0.82821 0.93090 0.98572 1.21225 0.91831 0.99568 1.05421 1.19015 0.92125 0.91795 1.06449 1.21752 0.83160 0.89290 0.77886 1.90550 1.77800 1.27225 1.52798 1.83911 1.16031 1.37656 1.75855 1.21507 0.88223 0.85191 1.55116 0.89986 1.26619 0.96441 1.02823 0.94283 1.70046 1.12636 1.24871 1.45442 0.84648 0.76518 0.75082 0.79851 1.18543 1.17895 1.18550 1.21490 1.01146 0.91209 0.99002 1.21195 0.91192 0.99619 0.98112 1.19911 0.94792 0.93149 1.01298 1.20720 0.97837 0.93516 1.03592 0.91050 0.91047 0.88634 0.92344 0.92361 0.85130 0.90804 0.85665 0.80936 0.89783 0.89138 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 10.28 71.98 0.74 -1.41 16 2 C 0.04 0.92 5.46 71.98 0.39 1.31 16 3 O -0.31 -8.28 9.16 -92.57 -0.85 -9.13 16 4 C 0.11 3.56 6.65 22.47 0.15 3.71 16 5 C -0.16 -6.19 8.58 22.65 0.19 -5.99 16 6 C -0.09 -4.15 5.87 -20.11 -0.12 -4.27 16 7 C 0.43 24.13 7.84 70.31 0.55 24.68 16 8 O -0.58 -34.92 15.59 19.81 0.31 -34.61 16 9 O -0.23 -14.12 8.99 11.39 0.10 -14.01 16 10 C -0.43 -26.70 9.65 67.96 0.66 -26.04 16 11 H 0.08 5.22 6.86 -2.91 -0.02 5.20 16 12 C 0.00 -0.01 5.50 84.89 0.47 0.45 16 13 N -0.89 -52.95 13.67 21.64 0.30 -52.65 16 14 Si 1.02 43.72 29.55 68.60 2.03 45.75 16 15 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 16 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 17 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 18 C -0.11 -4.24 9.61 22.55 0.22 -4.02 16 19 C -0.08 -2.37 9.67 22.21 0.21 -2.15 16 20 C -0.09 -2.44 5.90 -19.71 -0.12 -2.55 16 21 C -0.10 -1.81 9.78 71.24 0.70 -1.12 16 22 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.39 7.66 -2.39 -0.02 1.37 16 26 H 0.06 1.38 7.66 -2.39 -0.02 1.37 16 27 H 0.13 5.05 5.88 -2.91 -0.02 5.04 16 28 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 29 H 0.13 5.23 7.61 -2.91 -0.02 5.21 16 30 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 31 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.09 1.24 8.08 -2.39 -0.02 1.22 16 33 H 0.07 1.31 7.52 -2.39 -0.02 1.30 16 Total: -1.00 -75.65 293.28 7.05 -68.61 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 1.12 Total: 13.46 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 4.04 Total: -17.41 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.30 Total: -52.65 kcal Atomic # 8 Polarization: -57.32 SS G_CDS: -0.44 Total: -57.76 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -75.65 7.05 -68.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733605958.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.836 kcal (2) G-P(sol) polarization free energy of solvation -75.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds