Wall clock time and date at job start Mon Mar 30 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00052 * 2 1 4 4 H 1.48504 * 109.46809 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47042 * 299.99107 * 3 2 1 6 6 H 1.48497 * 109.47251 * 59.99285 * 3 2 1 7 7 C 1.37875 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00347 * 174.96378 * 7 2 1 9 9 C 1.50707 * 120.00084 * 354.97265 * 7 2 1 10 10 O 1.45196 * 112.84983 * 64.94505 * 9 7 2 11 11 C 1.34230 * 117.00138 * 54.50935 * 10 9 7 12 12 O 1.20828 * 119.99883 * 355.18612 * 11 10 9 13 13 C 1.50697 * 120.00131 * 175.18368 * 11 10 9 14 14 C 1.50696 * 109.47145 * 179.97438 * 13 11 10 15 15 C 1.34514 * 125.78497 * 90.03131 * 14 13 11 16 16 C 1.41385 * 106.83904 * 179.97438 * 15 14 13 17 17 C 1.34509 * 106.84202 * 359.97438 * 16 15 14 18 18 O 1.34301 * 125.79405 * 270.02388 * 14 13 11 19 19 C 1.53776 * 113.69029 * 196.21854 * 9 7 2 20 20 C 1.53785 * 87.08426 * 89.12322 * 19 9 7 21 21 C 1.53777 * 87.07900 * 25.42954 * 20 19 9 22 22 H 0.97005 * 119.99941 * 5.01005 * 1 2 3 23 23 H 1.08998 * 109.46902 * 60.00013 * 13 11 10 24 24 H 1.08998 * 109.47676 * 300.00461 * 13 11 10 25 25 H 1.07997 * 126.58621 * 359.97243 * 15 14 13 26 26 H 1.08003 * 126.57793 * 180.02562 * 16 15 14 27 27 H 1.08001 * 125.79429 * 179.97438 * 17 16 15 28 28 H 1.09005 * 113.61457 * 203.67104 * 19 9 7 29 29 H 1.09002 * 113.61686 * 334.57249 * 19 9 7 30 30 H 1.09004 * 113.61024 * 270.88513 * 20 19 9 31 31 H 1.08995 * 113.69321 * 139.99172 * 20 19 9 32 32 H 1.08997 * 113.62022 * 220.01934 * 21 20 19 33 33 H 1.09007 * 113.68787 * 89.12884 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0814 -1.1960 -0.0816 9 6 1.2554 -2.4966 0.1155 10 8 0.3933 -2.7537 -1.0242 11 6 0.9635 -2.7224 -2.2390 12 8 2.1231 -2.4028 -2.3540 13 6 0.1576 -3.0858 -3.4593 14 6 1.0244 -2.9702 -4.6866 15 6 1.7756 -3.9533 -5.2144 16 6 2.4187 -3.4119 -6.3512 17 6 2.0216 -2.1306 -6.4504 18 8 1.1779 -1.8683 -5.4389 19 6 2.1468 -3.6907 0.4955 20 6 1.8613 -3.3356 1.9643 21 6 0.5566 -2.6876 1.4720 22 1 -0.4850 0.8369 -0.0734 23 1 -0.6912 -2.4079 -3.5493 24 1 -0.2039 -4.1097 -3.3645 25 1 1.8696 -4.9625 -4.8415 26 1 3.0978 -3.9284 -7.0135 27 1 2.3300 -1.4310 -7.2131 28 1 1.7383 -4.6546 0.1919 29 1 3.1913 -3.5639 0.2106 30 1 2.5701 -2.6235 2.3870 31 1 1.7034 -4.2050 2.6023 32 1 0.3171 -1.7510 1.9755 33 1 -0.2877 -3.3761 1.4352 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810854031.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:00 Heat of formation + Delta-G solvation = -46.318738 kcal Electronic energy + Delta-G solvation = -18592.606528 eV Core-core repulsion = 15586.336231 eV Total energy + Delta-G solvation = -3006.270297 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.25886 -39.20318 -37.10665 -34.14562 -32.84413 -32.26039 -31.69149 -27.14548 -25.99291 -24.55455 -23.10663 -21.47757 -20.88269 -19.54669 -18.55492 -17.05357 -16.97387 -15.94353 -15.17320 -15.01800 -14.90804 -14.52275 -14.20891 -13.78631 -13.01074 -12.57211 -12.55343 -12.42704 -12.10754 -11.58519 -11.45864 -11.09031 -10.99734 -10.83260 -10.39452 -10.23470 -9.93241 -9.78732 -9.63128 -9.28263 -8.79938 -8.52254 -8.50189 -8.16255 -6.08717 -4.17003 1.99234 2.86289 3.24368 3.28072 3.35852 3.42130 3.54494 4.17722 4.39411 4.89919 5.23215 5.26241 5.28207 5.61095 5.68888 5.74202 5.77432 5.91632 6.02040 6.16019 6.18447 6.34652 6.46049 6.52206 6.63485 6.77223 6.88361 7.10536 7.32909 7.43001 7.56290 7.81436 7.94210 8.41560 8.84859 9.25290 9.50577 10.96200 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.021326 B = 0.008119 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.637813 B = 3447.901914 C = 4226.802579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.893 3.107 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.502 4.502 8 H 0.068 0.932 9 C 0.239 3.761 10 O -0.349 6.349 11 C 0.461 3.539 12 O -0.492 6.492 13 C -0.045 4.045 14 C 0.020 3.980 15 C -0.205 4.205 16 C -0.214 4.214 17 C -0.045 4.045 18 O -0.169 6.169 19 C -0.161 4.161 20 C -0.131 4.131 21 C -0.107 4.107 22 H 0.262 0.738 23 H 0.113 0.887 24 H 0.122 0.878 25 H 0.145 0.855 26 H 0.144 0.856 27 H 0.199 0.801 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.157 -6.734 -7.093 9.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.132 4.132 3 Si 0.720 3.280 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.540 4.540 8 H 0.086 0.914 9 C 0.205 3.795 10 O -0.266 6.266 11 C 0.302 3.698 12 O -0.379 6.379 13 C -0.083 4.083 14 C -0.031 4.031 15 C -0.225 4.225 16 C -0.234 4.234 17 C -0.113 4.113 18 O -0.065 6.065 19 C -0.199 4.199 20 C -0.168 4.168 21 C -0.145 4.145 22 H 0.071 0.929 23 H 0.131 0.869 24 H 0.140 0.860 25 H 0.163 0.837 26 H 0.162 0.838 27 H 0.215 0.785 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.100 -6.229 -6.933 9.321 hybrid contribution 0.677 0.864 -0.275 1.131 sum 0.577 -5.366 -7.208 9.004 Atomic orbital electron populations 1.70030 1.05787 1.26919 1.47692 1.25038 0.94891 0.99305 0.93955 0.86507 0.80527 0.83386 0.77551 1.19488 1.20927 1.20803 1.20963 0.93549 0.88606 1.50844 0.91425 1.21226 0.86376 0.92212 0.79656 1.86420 1.45567 1.79880 1.14712 1.22447 0.86540 0.75735 0.85107 1.90607 1.18151 1.42118 1.87009 1.19798 0.97184 1.05344 0.85967 1.21692 1.01985 0.84634 0.94756 1.21466 1.01471 1.00831 0.98683 1.21723 1.05266 0.95460 1.00909 1.23921 0.96283 0.97852 0.93237 1.84024 1.52713 1.36552 1.33214 1.23560 1.00926 0.98694 0.96741 1.22511 0.99376 0.99463 0.95464 1.22894 0.95099 1.00060 0.96419 0.92851 0.86917 0.86044 0.83723 0.83773 0.78459 0.92064 0.92069 0.90238 0.92951 0.90541 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.64 12.54 55.43 0.69 -23.94 16 2 C 0.07 2.04 5.24 -17.82 -0.09 1.95 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.50 -14.07 6.29 -34.44 -0.22 -14.29 16 8 H 0.07 1.97 7.82 -52.49 -0.41 1.56 16 9 C 0.24 6.03 0.50 -90.96 -0.05 5.99 16 10 O -0.35 -8.73 9.93 -39.26 -0.39 -9.12 16 11 C 0.46 10.79 7.60 36.00 0.27 11.06 16 12 O -0.49 -13.07 14.35 -18.75 -0.27 -13.34 16 13 C -0.05 -0.79 6.34 -29.04 -0.18 -0.98 16 14 C 0.02 0.36 5.82 -35.63 -0.21 0.15 16 15 C -0.21 -3.28 10.81 -39.70 -0.43 -3.71 16 16 C -0.21 -3.06 10.91 -39.70 -0.43 -3.49 16 17 C -0.05 -0.66 12.09 29.41 0.36 -0.30 16 18 O -0.17 -3.10 10.65 5.71 0.06 -3.04 16 19 C -0.16 -3.53 7.28 -25.92 -0.19 -3.72 16 20 C -0.13 -2.61 7.81 -25.92 -0.20 -2.82 16 21 C -0.11 -2.44 7.19 -25.92 -0.19 -2.63 16 22 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 23 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 24 H 0.12 1.66 8.14 -51.93 -0.42 1.24 16 25 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16 26 H 0.14 1.62 8.06 -52.48 -0.42 1.19 16 27 H 0.20 2.00 8.06 -52.49 -0.42 1.58 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.06 1.38 8.09 -51.93 -0.42 0.96 16 30 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.89 7.63 -51.93 -0.40 1.49 16 33 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 LS Contribution 291.08 15.07 4.39 4.39 Total: -1.00 -32.75 291.08 -6.26 -39.02 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -4.17 Total: 1.89 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -1.56 Total: -12.79 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.69 Total: -23.94 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.60 Total: -25.50 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.75 -6.26 -39.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810854031.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.302 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds