Wall clock time and date at job start Mon Mar 30 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00052 * 2 1 4 4 H 1.48504 * 109.46809 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47042 * 299.99107 * 3 2 1 6 6 H 1.48497 * 109.47251 * 59.99285 * 3 2 1 7 7 C 1.37875 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00347 * 174.96378 * 7 2 1 9 9 C 1.50707 * 120.00084 * 354.97265 * 7 2 1 10 10 O 1.45196 * 112.84983 * 64.94505 * 9 7 2 11 11 C 1.34230 * 117.00138 * 54.50935 * 10 9 7 12 12 O 1.20828 * 119.99883 * 355.18612 * 11 10 9 13 13 C 1.50697 * 120.00131 * 175.18368 * 11 10 9 14 14 C 1.50696 * 109.47145 * 179.97438 * 13 11 10 15 15 C 1.34514 * 125.78497 * 90.03131 * 14 13 11 16 16 C 1.41385 * 106.83904 * 179.97438 * 15 14 13 17 17 C 1.34509 * 106.84202 * 359.97438 * 16 15 14 18 18 O 1.34301 * 125.79405 * 270.02388 * 14 13 11 19 19 C 1.53776 * 113.69029 * 196.21854 * 9 7 2 20 20 C 1.53785 * 87.08426 * 89.12322 * 19 9 7 21 21 C 1.53777 * 87.07900 * 25.42954 * 20 19 9 22 22 H 0.97005 * 119.99941 * 5.01005 * 1 2 3 23 23 H 1.08998 * 109.46902 * 60.00013 * 13 11 10 24 24 H 1.08998 * 109.47676 * 300.00461 * 13 11 10 25 25 H 1.07997 * 126.58621 * 359.97243 * 15 14 13 26 26 H 1.08003 * 126.57793 * 180.02562 * 16 15 14 27 27 H 1.08001 * 125.79429 * 179.97438 * 17 16 15 28 28 H 1.09005 * 113.61457 * 203.67104 * 19 9 7 29 29 H 1.09002 * 113.61686 * 334.57249 * 19 9 7 30 30 H 1.09004 * 113.61024 * 270.88513 * 20 19 9 31 31 H 1.08995 * 113.69321 * 139.99172 * 20 19 9 32 32 H 1.08997 * 113.62022 * 220.01934 * 21 20 19 33 33 H 1.09007 * 113.68787 * 89.12884 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0814 -1.1960 -0.0816 9 6 1.2554 -2.4966 0.1155 10 8 0.3933 -2.7537 -1.0242 11 6 0.9635 -2.7224 -2.2390 12 8 2.1231 -2.4028 -2.3540 13 6 0.1576 -3.0858 -3.4593 14 6 1.0244 -2.9702 -4.6866 15 6 1.7756 -3.9533 -5.2144 16 6 2.4187 -3.4119 -6.3512 17 6 2.0216 -2.1306 -6.4504 18 8 1.1779 -1.8683 -5.4389 19 6 2.1468 -3.6907 0.4955 20 6 1.8613 -3.3356 1.9643 21 6 0.5566 -2.6876 1.4720 22 1 -0.4850 0.8369 -0.0734 23 1 -0.6912 -2.4079 -3.5493 24 1 -0.2039 -4.1097 -3.3645 25 1 1.8696 -4.9625 -4.8415 26 1 3.0978 -3.9284 -7.0135 27 1 2.3300 -1.4310 -7.2131 28 1 1.7383 -4.6546 0.1919 29 1 3.1913 -3.5639 0.2106 30 1 2.5701 -2.6235 2.3870 31 1 1.7034 -4.2050 2.6023 32 1 0.3171 -1.7510 1.9755 33 1 -0.2877 -3.3761 1.4352 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810854031.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:00 Heat of formation + Delta-G solvation = -65.551494 kcal Electronic energy + Delta-G solvation = -18593.440523 eV Core-core repulsion = 15586.336231 eV Total energy + Delta-G solvation = -3007.104292 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.47785 -41.04788 -38.91119 -36.02180 -34.37138 -34.10724 -33.01519 -28.60968 -27.89059 -26.33631 -24.91261 -22.67477 -22.37180 -20.99979 -20.45989 -18.87781 -18.24624 -17.54357 -17.01849 -16.91510 -16.46397 -16.35312 -15.75969 -15.36162 -14.73963 -14.10538 -13.89434 -13.70918 -13.55148 -13.44044 -12.99866 -12.95340 -12.85426 -12.67214 -12.17119 -12.11790 -11.84523 -11.61016 -11.14673 -10.81902 -10.81398 -10.49526 -10.40954 -9.39396 -8.20455 -6.33447 0.74449 1.29969 1.33051 1.44209 1.68856 1.75377 2.08485 2.34347 2.56002 3.13621 3.66890 3.99019 4.03124 4.15623 4.16925 4.20014 4.37333 4.42893 4.46851 4.63878 4.87452 4.92615 4.96000 5.02283 5.15708 5.20861 5.37844 5.47429 5.64142 5.65942 5.78880 6.00206 6.23270 6.50340 6.67715 7.31170 7.44638 8.83704 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.021326 B = 0.008119 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.637813 B = 3447.901914 C = 4226.802579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.032 3.968 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.043 0.957 9 C 0.211 3.789 10 O -0.359 6.359 11 C 0.452 3.548 12 O -0.533 6.533 13 C -0.033 4.033 14 C -0.020 4.020 15 C -0.203 4.203 16 C -0.222 4.222 17 C -0.047 4.047 18 O -0.200 6.200 19 C -0.154 4.154 20 C -0.112 4.112 21 C -0.106 4.106 22 H 0.263 0.737 23 H 0.119 0.881 24 H 0.162 0.838 25 H 0.163 0.837 26 H 0.176 0.824 27 H 0.237 0.763 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.036 -7.823 -7.711 10.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.171 4.171 3 Si 0.768 3.232 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.552 4.552 8 H 0.061 0.939 9 C 0.177 3.823 10 O -0.276 6.276 11 C 0.295 3.705 12 O -0.422 6.422 13 C -0.070 4.070 14 C -0.070 4.070 15 C -0.222 4.222 16 C -0.240 4.240 17 C -0.114 4.114 18 O -0.097 6.097 19 C -0.192 4.192 20 C -0.149 4.149 21 C -0.143 4.143 22 H 0.072 0.928 23 H 0.137 0.863 24 H 0.180 0.820 25 H 0.180 0.820 26 H 0.194 0.806 27 H 0.253 0.747 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.010 -7.329 -7.543 10.517 hybrid contribution 0.687 1.171 -0.178 1.369 sum 0.697 -6.158 -7.721 9.901 Atomic orbital electron populations 1.70093 1.06513 1.27488 1.48592 1.25628 0.95697 1.01825 0.93935 0.85748 0.79141 0.80398 0.77898 1.19951 1.21114 1.19172 1.21031 0.92602 0.90572 1.51002 0.93888 1.21465 0.87717 0.92481 0.80602 1.86397 1.45700 1.79904 1.15572 1.23545 0.86691 0.74383 0.85911 1.90573 1.20140 1.44016 1.87492 1.19837 0.96253 1.07696 0.83234 1.21843 1.04082 0.85372 0.95684 1.21877 1.00224 1.01309 0.98760 1.22160 1.05498 0.95530 1.00834 1.24830 0.94783 0.99037 0.92753 1.83996 1.53980 1.37344 1.34406 1.23502 0.99384 0.98367 0.97898 1.22434 0.97137 1.00399 0.94918 1.22874 0.96877 0.99542 0.95047 0.92768 0.86276 0.82029 0.81953 0.80629 0.74729 0.89931 0.93630 0.90949 0.88790 0.93136 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.22 12.54 21.45 0.27 -50.95 16 2 C 0.03 1.79 5.24 84.65 0.44 2.24 16 3 Si 0.94 45.73 29.54 68.60 2.03 47.76 16 4 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.51 -29.48 6.29 25.60 0.16 -29.32 16 8 H 0.04 2.60 7.82 -2.91 -0.02 2.58 16 9 C 0.21 10.71 0.50 -11.01 -0.01 10.70 16 10 O -0.36 -18.00 9.93 -51.42 -0.51 -18.51 16 11 C 0.45 21.23 7.60 71.23 0.54 21.77 16 12 O -0.53 -28.89 14.35 21.96 0.32 -28.57 16 13 C -0.03 -1.14 6.34 29.10 0.18 -0.95 16 14 C -0.02 -0.71 5.82 24.83 0.14 -0.56 16 15 C -0.20 -6.12 10.81 22.19 0.24 -5.88 16 16 C -0.22 -5.79 10.91 22.19 0.24 -5.55 16 17 C -0.05 -1.29 12.09 66.97 0.81 -0.48 16 18 O -0.20 -7.23 10.65 -2.48 -0.03 -7.25 16 19 C -0.15 -6.59 7.28 31.12 0.23 -6.36 16 20 C -0.11 -4.27 7.81 31.12 0.24 -4.03 16 21 C -0.11 -4.75 7.19 31.12 0.22 -4.53 16 22 H 0.26 14.43 8.32 -92.70 -0.77 13.66 16 23 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 24 H 0.16 4.07 8.14 -2.39 -0.02 4.05 16 25 H 0.16 4.14 8.06 -2.91 -0.02 4.11 16 26 H 0.18 3.33 8.06 -2.91 -0.02 3.30 16 27 H 0.24 4.10 8.06 -2.91 -0.02 4.08 16 28 H 0.08 3.14 8.14 -2.38 -0.02 3.12 16 29 H 0.04 2.06 8.09 -2.39 -0.02 2.04 16 30 H 0.07 2.85 8.14 -2.38 -0.02 2.83 16 31 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.05 2.50 7.63 -2.39 -0.02 2.49 16 33 H 0.08 3.11 8.14 -2.38 -0.02 3.09 16 Total: -1.00 -72.34 291.08 6.63 -65.71 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.10 Total: 14.78 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: 3.45 Total: -22.96 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.27 Total: -50.95 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -0.22 Total: -54.34 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -72.34 6.63 -65.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810854031.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.162 kcal (2) G-P(sol) polarization free energy of solvation -72.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds