Wall clock time and date at job start Mon Mar 30 2020 06:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47606 * 2 1 4 4 C 1.53006 * 109.46899 * 119.99893 * 2 1 3 5 5 C 1.50707 * 109.46914 * 184.99646 * 4 2 1 6 6 H 1.07995 * 120.00184 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99337 * 179.72376 * 5 4 2 8 8 N 1.31522 * 119.99679 * 180.27482 * 7 5 4 9 9 Si 1.86793 * 120.00635 * 0.27883 * 7 5 4 10 10 H 1.48503 * 109.47299 * 89.99589 * 9 7 5 11 11 H 1.48504 * 109.47284 * 210.00138 * 9 7 5 12 12 H 1.48505 * 109.46762 * 329.99791 * 9 7 5 13 13 O 1.42898 * 109.47077 * 239.99834 * 2 1 3 14 14 C 1.35640 * 117.00096 * 84.94597 * 13 2 1 15 15 C 1.38709 * 120.15111 * 354.50651 * 14 13 2 16 16 C 1.38057 * 120.08565 * 179.75326 * 15 14 13 17 17 C 1.38566 * 120.40261 * 0.54981 * 16 15 14 18 18 C 1.37766 * 120.30854 * 359.70678 * 17 16 15 19 19 C 1.39773 * 119.90428 * 0.02562 * 18 17 16 20 20 C 1.47395 * 120.19667 * 180.02562 * 19 18 17 21 21 O 1.21510 * 119.99529 * 179.97438 * 20 19 18 22 22 O 1.34745 * 119.99969 * 359.97438 * 20 19 18 23 23 H 1.08996 * 109.47046 * 300.00419 * 1 2 3 24 24 H 1.09004 * 109.46823 * 59.99758 * 1 2 3 25 25 H 1.08996 * 109.47606 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47084 * 65.00052 * 4 2 1 27 27 H 1.08993 * 109.47057 * 304.99649 * 4 2 1 28 28 H 0.97000 * 120.00350 * 180.02562 * 8 7 5 29 29 H 1.07995 * 119.95641 * 0.02562 * 15 14 13 30 30 H 1.07995 * 119.79424 * 180.25851 * 16 15 14 31 31 H 1.07995 * 119.84325 * 179.72189 * 17 16 15 32 32 H 1.08001 * 120.04497 * 180.02562 * 18 17 16 33 33 H 0.96704 * 117.00289 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0789 -0.0856 0.5397 7 6 4.2297 -1.1883 2.3611 8 7 5.5400 -1.0910 2.4194 9 14 3.3009 -2.1034 3.6987 10 1 3.1755 -3.5348 3.3237 11 1 4.0410 -1.9906 4.9812 12 1 1.9475 -1.5121 3.8546 13 8 2.0063 -0.6737 -1.1667 14 6 2.1111 0.0608 -2.3022 15 6 1.6576 1.3714 -2.3286 16 6 1.7696 2.1194 -3.4836 17 6 2.3240 1.5658 -4.6265 18 6 2.7750 0.2641 -4.6202 19 6 2.6729 -0.5031 -3.4563 20 6 3.1539 -1.8963 -3.4422 21 8 3.0638 -2.5598 -2.4282 22 8 3.6934 -2.4341 -4.5537 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.7515 -1.7715 1.2057 27 1 1.6053 -0.2617 2.1370 28 1 6.0241 -1.4946 3.1567 29 1 1.2202 1.8086 -1.4433 30 1 1.4188 3.1407 -3.4977 31 1 2.4032 2.1577 -5.5264 32 1 3.2068 -0.1629 -5.5133 33 1 3.9943 -3.3513 -4.4961 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829181439.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:25 Heat of formation + Delta-G solvation = -131.829284 kcal Electronic energy + Delta-G solvation = -18282.260198 eV Core-core repulsion = 15272.281886 eV Total energy + Delta-G solvation = -3009.978312 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.67869 -40.45157 -38.54173 -36.95878 -35.42945 -33.71998 -32.33504 -30.75740 -29.84108 -25.63789 -25.09255 -23.98164 -22.15807 -21.50623 -19.40316 -18.96614 -18.84843 -17.82956 -16.87690 -16.72799 -16.32381 -15.83444 -15.75952 -15.56099 -14.88657 -14.42156 -14.27771 -13.93466 -13.86654 -13.53412 -13.19186 -12.85788 -12.70541 -12.57158 -12.49653 -12.16245 -11.89859 -11.75013 -11.56105 -11.30476 -11.26355 -10.79354 -10.09150 -9.17649 -8.30548 -6.33767 -0.22691 0.46101 1.31860 1.35777 1.45676 1.63650 2.13454 2.32291 2.35597 2.83212 3.05888 3.82985 3.86353 4.01551 4.13552 4.19020 4.30320 4.37531 4.50500 4.61363 4.78831 4.91129 4.95526 5.03627 5.18193 5.22246 5.32726 5.37490 5.47964 5.59764 5.64489 5.85003 6.21369 6.57609 6.71344 7.07217 7.27894 8.87264 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.022787 B = 0.007126 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.495029 B = 3928.098633 C = 4494.529351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.086 3.914 3 H 0.070 0.930 4 C -0.009 4.009 5 C -0.519 4.519 6 H 0.021 0.979 7 C 0.000 4.000 8 N -0.954 5.954 9 Si 0.953 3.047 10 H -0.277 1.277 11 H -0.279 1.279 12 H -0.235 1.235 13 O -0.298 6.298 14 C 0.170 3.830 15 C -0.239 4.239 16 C -0.031 4.031 17 C -0.174 4.174 18 C -0.021 4.021 19 C -0.208 4.208 20 C 0.517 3.483 21 O -0.539 6.539 22 O -0.505 6.505 23 H 0.093 0.907 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.016 0.984 27 H 0.058 0.942 28 H 0.265 0.735 29 H 0.147 0.853 30 H 0.169 0.831 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.044 5.909 -14.756 19.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.031 3.969 3 H 0.088 0.912 4 C -0.047 4.047 5 C -0.557 4.557 6 H 0.039 0.961 7 C -0.196 4.196 8 N -0.595 5.595 9 Si 0.776 3.224 10 H -0.203 1.203 11 H -0.204 1.204 12 H -0.157 1.157 13 O -0.210 6.210 14 C 0.121 3.879 15 C -0.258 4.258 16 C -0.049 4.049 17 C -0.192 4.192 18 C -0.039 4.039 19 C -0.210 4.210 20 C 0.363 3.637 21 O -0.430 6.430 22 O -0.319 6.319 23 H 0.112 0.888 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.164 0.836 30 H 0.187 0.813 31 H 0.189 0.811 32 H 0.180 0.820 33 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -11.023 5.874 -14.348 19.023 hybrid contribution 0.644 -1.305 0.985 1.757 sum -10.380 4.569 -13.363 17.527 Atomic orbital electron populations 1.22345 0.92846 1.03193 1.04054 1.22652 0.94706 0.96230 0.83330 0.91199 1.19691 0.94727 0.96566 0.93679 1.21246 0.92201 1.34531 1.07682 0.96106 1.26053 0.95725 0.96861 1.00994 1.70084 1.08682 1.47203 1.33529 0.85627 0.80183 0.78928 0.77689 1.20301 1.20398 1.15746 1.86405 1.79181 1.38579 1.16843 1.19690 0.90721 0.91411 0.86058 1.21570 1.08828 0.92957 1.02404 1.21687 0.92145 1.00415 0.90664 1.21465 1.02336 0.95018 1.00358 1.21575 0.93207 0.93873 0.95270 1.18703 1.13601 0.92719 0.95946 1.21021 0.74282 0.88101 0.80330 1.91010 1.54191 1.63280 1.34536 1.84459 1.73308 1.36137 1.38025 0.88815 0.90643 0.92360 0.96593 0.92407 0.92580 0.83584 0.81344 0.81134 0.82035 0.71213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.08 9.17 71.98 0.66 -4.42 16 2 C 0.09 3.58 2.17 30.59 0.07 3.65 16 3 H 0.07 2.80 6.31 -2.39 -0.02 2.78 16 4 C -0.01 -0.47 3.75 29.85 0.11 -0.36 16 5 C -0.52 -32.14 9.43 25.60 0.24 -31.90 16 6 H 0.02 1.44 7.99 -2.91 -0.02 1.42 16 7 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 8 N -0.95 -63.36 13.96 21.45 0.30 -63.06 16 9 Si 0.95 46.55 27.47 68.60 1.88 48.44 16 10 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.23 -10.17 6.54 99.48 0.65 -9.52 16 13 O -0.30 -13.91 7.63 -68.62 -0.52 -14.44 16 14 C 0.17 6.51 6.61 22.86 0.15 6.66 16 15 C -0.24 -6.94 8.23 22.34 0.18 -6.75 16 16 C -0.03 -0.64 10.03 22.31 0.22 -0.42 16 17 C -0.17 -3.28 10.02 22.24 0.22 -3.06 16 18 C -0.02 -0.52 9.61 22.53 0.22 -0.30 16 19 C -0.21 -7.30 5.89 -20.02 -0.12 -7.42 16 20 C 0.52 19.81 8.26 70.23 0.58 20.39 16 21 O -0.54 -26.57 15.95 26.81 0.43 -26.14 16 22 O -0.51 -13.65 12.68 -56.55 -0.72 -14.37 16 23 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 24 H 0.07 1.93 6.91 -2.38 -0.02 1.92 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.02 0.81 7.58 -2.39 -0.02 0.79 16 27 H 0.06 2.61 7.19 -2.39 -0.02 2.59 16 28 H 0.27 16.36 8.31 -92.71 -0.77 15.59 16 29 H 0.15 3.89 5.43 -2.91 -0.02 3.87 16 30 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 31 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.16 3.07 7.61 -2.91 -0.02 3.05 16 33 H 0.43 7.93 9.11 -74.05 -0.67 7.26 16 Total: -1.00 -85.36 285.92 4.78 -80.58 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.41 Total: 12.49 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 3.00 Total: -23.50 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: 0.30 Total: -63.06 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -0.81 Total: -54.95 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.88 Total: 48.44 kcal Total: -85.36 4.78 -80.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829181439.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.249 kcal (2) G-P(sol) polarization free energy of solvation -85.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds