Wall clock time and date at job start Mon Mar 30 2020 06:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35960 * 117.00186 * 2 1 4 4 C 1.38716 * 120.00316 * 180.02562 * 3 2 1 5 5 C 1.38115 * 119.99968 * 180.02562 * 4 3 2 6 6 C 1.38710 * 120.00241 * 0.02562 * 5 4 3 7 7 O 1.35986 * 120.00242 * 179.97438 * 6 5 4 8 8 C 1.34248 * 116.99710 * 77.08929 * 7 6 5 9 9 O 1.20827 * 119.99924 * 355.08890 * 8 7 6 10 10 C 1.50700 * 119.99569 * 175.09151 * 8 7 6 11 11 H 1.08999 * 109.47012 * 60.00430 * 10 8 7 12 12 C 1.52999 * 109.47253 * 299.99983 * 10 8 7 13 13 C 1.50699 * 109.46806 * 179.97438 * 10 8 7 14 14 H 1.08004 * 120.00446 * 0.02562 * 13 10 8 15 15 C 1.37877 * 119.99825 * 180.27163 * 13 10 8 16 16 N 1.31512 * 120.00316 * 359.72808 * 15 13 10 17 17 Si 1.86804 * 120.00087 * 179.72490 * 15 13 10 18 18 H 1.48507 * 109.47056 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46999 * 120.00236 * 17 15 13 20 20 H 1.48495 * 109.47163 * 240.00397 * 17 15 13 21 21 C 1.38715 * 119.99859 * 0.25159 * 6 5 4 22 22 C 1.38112 * 119.99964 * 359.45290 * 21 6 5 23 23 H 1.09007 * 109.46919 * 300.00161 * 1 2 3 24 24 H 1.08998 * 109.47130 * 59.99842 * 1 2 3 25 25 H 1.08997 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.99515 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.99886 * 179.97438 * 5 4 3 28 28 H 1.09004 * 109.47042 * 300.00208 * 12 10 8 29 29 H 1.09000 * 109.46930 * 60.00119 * 12 10 8 30 30 H 1.08998 * 109.47005 * 180.02562 * 12 10 8 31 31 H 0.96998 * 120.00639 * 179.97438 * 16 15 13 32 32 H 1.07998 * 119.99853 * 179.69792 * 21 6 5 33 33 H 1.08001 * 120.00120 * 180.27198 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4315 1.2840 -0.0005 5 6 4.0585 2.5146 0.0000 6 6 3.3031 3.6780 0.0016 7 8 3.9204 4.8896 0.0027 8 6 4.4347 5.3126 -1.1630 9 8 4.4162 4.5880 -2.1298 10 6 5.0350 6.6910 -1.2657 11 1 5.8648 6.7791 -0.5645 12 6 3.9703 7.7373 -0.9301 13 6 5.5374 6.9168 -2.6684 14 1 5.4321 6.1401 -3.4114 15 6 6.1361 8.1132 -3.0020 16 7 6.2639 9.0593 -2.0975 17 14 6.7657 8.3903 -4.7388 18 1 6.5025 7.1810 -5.5596 19 1 6.0681 9.5562 -5.3380 20 1 8.2266 8.6541 -4.6995 21 6 1.9178 3.6054 0.0080 22 6 1.2908 2.3748 0.0013 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 4.0197 0.3782 -0.0005 27 1 5.1370 2.5712 0.0000 28 1 3.1405 7.6492 -1.6314 29 1 3.6074 7.5737 0.0846 30 1 4.4045 8.7343 -1.0048 31 1 6.6854 9.9009 -2.3321 32 1 1.3297 4.5111 0.0141 33 1 0.2123 2.3183 0.0018 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850742270.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:01 Heat of formation + Delta-G solvation = -93.236279 kcal Electronic energy + Delta-G solvation = -17736.966486 eV Core-core repulsion = 14728.661692 eV Total energy + Delta-G solvation = -3008.304794 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.71137 -39.64051 -37.29254 -35.68835 -33.92947 -31.15255 -30.75196 -29.31110 -27.30521 -25.25109 -23.86695 -22.76803 -21.76416 -19.94453 -18.25168 -17.34467 -16.63712 -16.17176 -16.01338 -15.79047 -14.92038 -14.67930 -14.42883 -13.74063 -13.55511 -13.29370 -12.75317 -12.68109 -12.25428 -12.13341 -11.73530 -11.26149 -11.10863 -10.99053 -10.80370 -10.73831 -10.40517 -10.20702 -10.08850 -9.30063 -9.08301 -9.01005 -8.49693 -7.98478 -6.14105 -4.19925 1.31090 1.34473 3.13977 3.17645 3.27474 3.34586 3.38536 3.47365 4.03091 4.40055 4.74208 4.83246 4.96492 4.98698 5.19403 5.23061 5.29179 5.39876 5.55832 5.82384 5.99393 6.26627 6.29788 6.52849 6.60739 6.67423 6.81262 6.86767 7.20286 7.38015 7.39562 7.69870 7.91485 8.09359 8.81861 8.90370 9.46096 10.93305 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.045229 B = 0.004553 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.917472 B = 6148.290492 C = 6350.794983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.115 3.885 4 C -0.136 4.136 5 C -0.085 4.085 6 C 0.064 3.936 7 O -0.306 6.306 8 C 0.462 3.538 9 O -0.499 6.499 10 C 0.060 3.940 11 H 0.067 0.933 12 C -0.135 4.135 13 C -0.514 4.514 14 H 0.077 0.923 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.905 3.095 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.086 4.086 22 C -0.194 4.194 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.098 0.902 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.032 0.968 29 H 0.025 0.975 30 H 0.098 0.902 31 H 0.263 0.737 32 H 0.133 0.867 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.801 -12.202 6.255 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.071 3.929 4 C -0.155 4.155 5 C -0.103 4.103 6 C 0.022 3.978 7 O -0.223 6.223 8 C 0.307 3.693 9 O -0.382 6.382 10 C 0.041 3.959 11 H 0.085 0.915 12 C -0.192 4.192 13 C -0.552 4.552 14 H 0.095 0.905 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.732 3.268 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.104 4.104 22 C -0.213 4.213 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.116 0.884 26 H 0.152 0.848 27 H 0.153 0.847 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.151 0.849 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.645 -12.456 5.954 16.841 hybrid contribution 0.059 0.280 -0.904 0.948 sum -9.586 -12.175 5.050 16.298 Atomic orbital electron populations 1.23042 0.78588 1.03747 1.01430 1.86062 1.21244 1.26911 1.89001 1.18988 0.92310 0.84071 0.97570 1.20229 0.91278 0.98078 1.05900 1.21187 1.00600 0.90969 0.97582 1.18567 0.90956 0.84869 1.03359 1.84822 1.66979 1.32246 1.38228 1.25877 0.73694 0.91080 0.78656 1.90532 1.53599 1.56588 1.37531 1.18812 0.95118 0.81677 1.00267 0.91543 1.21755 0.97347 1.03213 0.96931 1.21171 1.38409 1.01219 0.94353 0.90529 1.24933 0.95459 0.95575 0.97956 1.69882 1.43693 1.05879 1.33531 0.86316 0.78397 0.78278 0.83814 1.19481 1.20849 1.20828 1.20990 0.93191 0.98007 0.98238 1.21031 0.99943 0.91591 1.08736 0.92664 0.92610 0.88378 0.84754 0.84747 0.94910 0.95643 0.88396 0.92670 0.84895 0.85018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.90 10.50 -19.61 -0.21 -4.11 16 3 C 0.12 1.61 6.69 -39.23 -0.26 1.34 16 4 C -0.14 -1.98 9.98 -39.45 -0.39 -2.37 16 5 C -0.08 -1.41 9.56 -39.45 -0.38 -1.79 16 6 C 0.06 1.18 5.13 -39.23 -0.20 0.98 16 7 O -0.31 -6.35 9.93 -23.77 -0.24 -6.59 16 8 C 0.46 10.97 7.12 36.01 0.26 11.23 16 9 O -0.50 -12.91 14.95 -18.75 -0.28 -13.19 16 10 C 0.06 1.52 2.74 -92.92 -0.25 1.27 16 11 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 12 C -0.13 -3.15 8.91 37.16 0.33 -2.82 16 13 C -0.51 -14.34 8.37 -34.44 -0.29 -14.63 16 14 H 0.08 2.24 6.76 -52.48 -0.35 1.88 16 15 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 16 N -0.89 -24.58 11.33 55.43 0.63 -23.95 16 17 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.09 -1.35 9.98 -39.45 -0.39 -1.74 16 22 C -0.19 -2.60 9.03 -39.45 -0.36 -2.96 16 23 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 24 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 25 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 27 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.02 0.52 8.11 -51.93 -0.42 0.09 16 30 H 0.10 2.46 6.08 -51.93 -0.32 2.15 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 33 H 0.13 1.35 6.29 -52.49 -0.33 1.02 16 LS Contribution 289.67 15.07 4.37 4.37 Total: -1.00 -30.65 289.67 -5.68 -36.33 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -3.89 Total: -0.52 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -1.04 Total: -8.67 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.63 Total: -23.95 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.72 Total: -23.88 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.65 -5.68 -36.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850742270.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.903 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds