Wall clock time and date at job start Mon Mar 30 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35966 * 117.00211 * 2 1 4 4 C 1.38595 * 120.07418 * 359.97231 * 3 2 1 5 5 C 1.38221 * 119.99755 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.15047 * 359.74620 * 5 4 3 7 7 C 1.38219 * 120.15380 * 0.51397 * 6 5 4 8 8 C 1.38590 * 119.99739 * 359.48307 * 7 6 5 9 9 O 1.35999 * 120.07441 * 180.27490 * 8 7 6 10 10 C 1.34238 * 117.00165 * 261.15270 * 9 8 7 11 11 O 1.20825 * 119.99747 * 5.42391 * 10 9 8 12 12 C 1.50693 * 119.99965 * 185.41640 * 10 9 8 13 13 H 1.09005 * 109.47367 * 300.00594 * 12 10 9 14 14 C 1.53006 * 109.47067 * 60.00601 * 12 10 9 15 15 C 1.50703 * 109.47174 * 180.02562 * 12 10 9 16 16 H 1.07999 * 119.99755 * 0.02562 * 15 12 10 17 17 C 1.37881 * 119.99905 * 180.02562 * 15 12 10 18 18 N 1.31518 * 120.00082 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 119.99679 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.46980 * 90.00550 * 19 17 15 21 21 H 1.48500 * 109.46665 * 210.00115 * 19 17 15 22 22 H 1.48499 * 109.47091 * 330.00087 * 19 17 15 23 23 H 1.08999 * 109.47145 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47184 * 300.00501 * 1 2 3 25 25 H 1.08997 * 109.46581 * 60.00420 * 1 2 3 26 26 H 1.08002 * 120.00161 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.92081 * 179.97438 * 5 4 3 28 28 H 1.08000 * 119.92324 * 180.24834 * 6 5 4 29 29 H 1.07997 * 120.00377 * 179.76738 * 7 6 5 30 30 H 1.08995 * 109.46917 * 59.99231 * 14 12 10 31 31 H 1.09001 * 109.47326 * 179.97438 * 14 12 10 32 32 H 1.09000 * 109.46694 * 299.99852 * 14 12 10 33 33 H 0.96991 * 120.00020 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2114 0.0000 4 6 1.2931 2.3748 -0.0006 5 6 1.9223 3.6055 -0.0011 6 6 3.3030 3.6796 0.0042 7 6 4.0603 2.5234 -0.0006 8 6 3.4360 1.2861 0.0000 9 8 4.1797 0.1475 0.0009 10 6 4.3593 -0.4641 -1.1805 11 8 3.9536 0.0511 -2.1953 12 6 5.0670 -1.7932 -1.2410 13 1 6.0764 -1.6858 -0.8439 14 6 4.2973 -2.8193 -0.4069 15 6 5.1377 -2.2600 -2.6722 16 1 4.7130 -1.6545 -3.4592 17 6 5.7445 -3.4600 -2.9767 18 7 6.2612 -4.1975 -2.0182 19 14 5.8328 -4.0381 -4.7508 20 1 7.0819 -3.5326 -5.3746 21 1 5.8264 -5.5227 -4.7884 22 1 4.6601 -3.5189 -5.4996 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 0.2145 2.3197 -0.0006 27 1 1.3341 4.5112 -0.0020 28 1 3.7908 4.6432 0.0078 29 1 5.1386 2.5841 -0.0002 30 1 3.2879 -2.9266 -0.8039 31 1 4.8089 -3.7808 -0.4510 32 1 4.2465 -2.4815 0.6282 33 1 6.6878 -5.0418 -2.2324 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850742816.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:06 Heat of formation + Delta-G solvation = -90.967848 kcal Electronic energy + Delta-G solvation = -18326.082872 eV Core-core repulsion = 15317.876444 eV Total energy + Delta-G solvation = -3008.206428 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.78049 -39.11632 -37.25218 -35.93017 -33.85812 -30.83706 -30.24772 -29.71109 -27.20565 -25.18069 -24.00879 -22.19450 -21.94373 -19.99516 -18.10890 -17.09131 -16.48556 -16.13079 -16.04415 -15.47263 -15.02978 -14.63652 -14.37527 -14.13987 -13.49445 -12.99871 -12.69073 -12.36476 -12.06499 -11.83703 -11.56528 -11.15559 -11.06701 -11.00907 -10.79796 -10.68049 -10.38065 -10.19749 -10.04195 -9.30075 -9.02857 -8.72427 -8.43297 -8.00489 -6.08709 -4.14127 1.25534 1.45921 3.23652 3.31315 3.33481 3.37268 3.43423 3.53674 4.04514 4.43515 4.82384 4.90560 5.09217 5.18038 5.22476 5.24423 5.39738 5.51179 5.54223 5.74065 6.22527 6.29897 6.36014 6.49478 6.71044 6.76540 6.91516 6.97004 7.24602 7.47524 7.54217 7.77094 7.97726 8.16322 8.89803 8.97152 9.51036 10.98656 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.031455 B = 0.005994 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.948773 B = 4669.839371 C = 4905.228435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.302 6.302 3 C 0.121 3.879 4 C -0.201 4.201 5 C -0.089 4.089 6 C -0.146 4.146 7 C -0.088 4.088 8 C 0.069 3.931 9 O -0.299 6.299 10 C 0.467 3.533 11 O -0.501 6.501 12 C 0.061 3.939 13 H 0.065 0.935 14 C -0.132 4.132 15 C -0.512 4.512 16 H 0.075 0.925 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.905 3.095 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 H 0.101 0.899 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.131 0.869 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.136 0.864 30 H 0.032 0.968 31 H 0.096 0.904 32 H 0.024 0.976 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.008 11.240 6.402 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.215 6.215 3 C 0.075 3.925 4 C -0.220 4.220 5 C -0.107 4.107 6 C -0.165 4.165 7 C -0.107 4.107 8 C 0.026 3.974 9 O -0.215 6.215 10 C 0.312 3.688 11 O -0.386 6.386 12 C 0.043 3.957 13 H 0.083 0.917 14 C -0.189 4.189 15 C -0.550 4.550 16 H 0.093 0.907 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.732 3.268 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 H 0.119 0.881 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.149 0.851 27 H 0.144 0.856 28 H 0.146 0.854 29 H 0.154 0.846 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.043 0.957 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.959 11.028 6.089 15.458 hybrid contribution -0.274 -0.099 -0.948 0.991 sum -9.233 10.929 5.141 15.203 Atomic orbital electron populations 1.23074 0.78573 1.04151 1.00930 1.86228 1.21179 1.26007 1.88062 1.19339 0.91501 0.85179 0.96509 1.21100 0.99911 0.91875 1.09088 1.20910 0.94649 0.96814 0.98323 1.20881 0.93727 0.97823 1.04036 1.21120 1.00782 0.90408 0.98340 1.18012 0.86717 0.86807 1.05815 1.84825 1.64533 1.34906 1.37283 1.25809 0.76274 0.87359 0.79379 1.90504 1.47573 1.65113 1.35364 1.18785 0.95173 0.82649 0.99132 0.91738 1.21715 0.99204 1.02501 0.95520 1.21128 1.37766 1.05220 0.90847 0.90672 1.24929 0.94902 0.96156 0.97954 1.69882 1.38017 1.13401 1.31722 0.86372 0.78662 0.77536 0.84200 1.20498 1.21102 1.19710 0.88060 0.92786 0.92732 0.85124 0.85629 0.85373 0.84627 0.94841 0.88554 0.95702 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.30 -5.49 10.23 -34.13 -0.35 -5.84 16 3 C 0.12 2.16 6.65 -39.11 -0.26 1.90 16 4 C -0.20 -2.79 9.04 -39.46 -0.36 -3.14 16 5 C -0.09 -1.09 10.04 -39.58 -0.40 -1.48 16 6 C -0.15 -1.90 10.04 -39.58 -0.40 -2.29 16 7 C -0.09 -1.42 9.98 -39.46 -0.39 -1.81 16 8 C 0.07 1.35 4.97 -39.11 -0.19 1.15 16 9 O -0.30 -6.67 9.72 -29.10 -0.28 -6.95 16 10 C 0.47 11.71 7.10 36.00 0.26 11.97 16 11 O -0.50 -13.61 15.20 -18.75 -0.28 -13.89 16 12 C 0.06 1.62 2.74 -92.92 -0.25 1.37 16 13 H 0.06 1.73 8.14 -51.93 -0.42 1.31 16 14 C -0.13 -3.25 8.90 37.16 0.33 -2.92 16 15 C -0.51 -14.69 8.37 -34.44 -0.29 -14.98 16 16 H 0.08 2.25 6.76 -52.49 -0.35 1.90 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 19 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 25 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 26 H 0.13 1.42 6.30 -52.49 -0.33 1.09 16 27 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 29 H 0.14 1.98 8.06 -52.49 -0.42 1.55 16 30 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 2.52 6.07 -51.93 -0.32 2.20 16 32 H 0.02 0.54 8.11 -51.93 -0.42 0.12 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 LS Contribution 289.74 15.07 4.37 4.37 Total: -1.00 -32.41 289.74 -5.89 -38.31 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -3.89 Total: -0.97 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.06 Total: -7.28 kcal Atomic # 7 Polarization: -25.08 SS G_CDS: 0.63 Total: -24.45 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.92 Total: -26.69 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.41 -5.89 -38.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850742816.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.661 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds