Wall clock time and date at job start Mon Mar 30 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35966 * 117.00211 * 2 1 4 4 C 1.38595 * 120.07418 * 359.97231 * 3 2 1 5 5 C 1.38221 * 119.99755 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.15047 * 359.74620 * 5 4 3 7 7 C 1.38219 * 120.15380 * 0.51397 * 6 5 4 8 8 C 1.38590 * 119.99739 * 359.48307 * 7 6 5 9 9 O 1.35999 * 120.07441 * 180.27490 * 8 7 6 10 10 C 1.34238 * 117.00165 * 261.15270 * 9 8 7 11 11 O 1.20825 * 119.99747 * 5.42391 * 10 9 8 12 12 C 1.50693 * 119.99965 * 185.41640 * 10 9 8 13 13 H 1.09005 * 109.47367 * 300.00594 * 12 10 9 14 14 C 1.53006 * 109.47067 * 60.00601 * 12 10 9 15 15 C 1.50703 * 109.47174 * 180.02562 * 12 10 9 16 16 H 1.07999 * 119.99755 * 0.02562 * 15 12 10 17 17 C 1.37881 * 119.99905 * 180.02562 * 15 12 10 18 18 N 1.31518 * 120.00082 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 119.99679 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.46980 * 90.00550 * 19 17 15 21 21 H 1.48500 * 109.46665 * 210.00115 * 19 17 15 22 22 H 1.48499 * 109.47091 * 330.00087 * 19 17 15 23 23 H 1.08999 * 109.47145 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47184 * 300.00501 * 1 2 3 25 25 H 1.08997 * 109.46581 * 60.00420 * 1 2 3 26 26 H 1.08002 * 120.00161 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.92081 * 179.97438 * 5 4 3 28 28 H 1.08000 * 119.92324 * 180.24834 * 6 5 4 29 29 H 1.07997 * 120.00377 * 179.76738 * 7 6 5 30 30 H 1.08995 * 109.46917 * 59.99231 * 14 12 10 31 31 H 1.09001 * 109.47326 * 179.97438 * 14 12 10 32 32 H 1.09000 * 109.46694 * 299.99852 * 14 12 10 33 33 H 0.96991 * 120.00020 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2114 0.0000 4 6 1.2931 2.3748 -0.0006 5 6 1.9223 3.6055 -0.0011 6 6 3.3030 3.6796 0.0042 7 6 4.0603 2.5234 -0.0006 8 6 3.4360 1.2861 0.0000 9 8 4.1797 0.1475 0.0009 10 6 4.3593 -0.4641 -1.1805 11 8 3.9536 0.0511 -2.1953 12 6 5.0670 -1.7932 -1.2410 13 1 6.0764 -1.6858 -0.8439 14 6 4.2973 -2.8193 -0.4069 15 6 5.1377 -2.2600 -2.6722 16 1 4.7130 -1.6545 -3.4592 17 6 5.7445 -3.4600 -2.9767 18 7 6.2612 -4.1975 -2.0182 19 14 5.8328 -4.0381 -4.7508 20 1 7.0819 -3.5326 -5.3746 21 1 5.8264 -5.5227 -4.7884 22 1 4.6601 -3.5189 -5.4996 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 0.2145 2.3197 -0.0006 27 1 1.3341 4.5112 -0.0020 28 1 3.7908 4.6432 0.0078 29 1 5.1386 2.5841 -0.0002 30 1 3.2879 -2.9266 -0.8039 31 1 4.8089 -3.7808 -0.4510 32 1 4.2465 -2.4815 0.6282 33 1 6.6878 -5.0418 -2.2324 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850742816.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:06 Heat of formation + Delta-G solvation = -110.108141 kcal Electronic energy + Delta-G solvation = -18326.912857 eV Core-core repulsion = 15317.876444 eV Total energy + Delta-G solvation = -3009.036413 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.30294 -40.56341 -38.54459 -37.58852 -35.96204 -32.80356 -31.47900 -30.94821 -28.21742 -27.32546 -25.75872 -23.50859 -23.31184 -21.70886 -19.46360 -18.67847 -18.17693 -17.96755 -17.70878 -16.73328 -16.43645 -16.31239 -15.78578 -15.41835 -14.88679 -14.78263 -14.44086 -13.70229 -13.52649 -13.12631 -13.00010 -12.97573 -12.79045 -12.65917 -12.38776 -12.25972 -12.09671 -12.06364 -11.75837 -11.22826 -11.15071 -10.56898 -9.93429 -9.22454 -8.22150 -6.36299 0.04357 0.32671 1.34532 1.41022 1.41832 1.53443 1.97547 2.29688 2.42493 2.78171 3.07248 3.75346 3.85787 4.04199 4.20943 4.32518 4.36002 4.36989 4.56145 4.63364 4.64446 4.77483 4.85924 4.99324 5.15411 5.23471 5.37031 5.40581 5.50959 5.65261 5.76326 5.84696 6.05406 6.33521 6.69524 7.08456 7.32400 8.84604 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.031455 B = 0.005994 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.948773 B = 4669.839371 C = 4905.228435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.343 6.343 3 C 0.100 3.900 4 C -0.199 4.199 5 C -0.072 4.072 6 C -0.140 4.140 7 C -0.100 4.100 8 C 0.005 3.995 9 O -0.299 6.299 10 C 0.472 3.528 11 O -0.531 6.531 12 C 0.054 3.946 13 H 0.052 0.948 14 C -0.115 4.115 15 C -0.540 4.540 16 H 0.054 0.946 17 C 0.024 3.976 18 N -0.908 5.908 19 Si 0.967 3.033 20 H -0.271 1.271 21 H -0.271 1.271 22 H -0.277 1.277 23 H 0.110 0.890 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.163 0.837 27 H 0.174 0.826 28 H 0.167 0.833 29 H 0.139 0.861 30 H 0.026 0.974 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.363 13.028 6.429 17.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.054 3.946 4 C -0.218 4.218 5 C -0.089 4.089 6 C -0.158 4.158 7 C -0.118 4.118 8 C -0.036 4.036 9 O -0.215 6.215 10 C 0.319 3.681 11 O -0.418 6.418 12 C 0.035 3.965 13 H 0.070 0.930 14 C -0.173 4.173 15 C -0.578 4.578 16 H 0.072 0.928 17 C -0.177 4.177 18 N -0.546 5.546 19 Si 0.791 3.209 20 H -0.196 1.196 21 H -0.195 1.195 22 H -0.202 1.202 23 H 0.129 0.871 24 H 0.099 0.901 25 H 0.083 0.917 26 H 0.181 0.819 27 H 0.191 0.809 28 H 0.185 0.815 29 H 0.157 0.843 30 H 0.045 0.955 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.316 12.820 6.156 17.569 hybrid contribution 0.063 -0.511 -0.867 1.008 sum -10.252 12.309 5.289 16.870 Atomic orbital electron populations 1.23397 0.75940 1.05530 1.02709 1.86157 1.24149 1.27053 1.88358 1.19639 0.91275 0.86438 0.97293 1.21545 1.01425 0.91079 1.07739 1.21537 0.94712 0.97867 0.94830 1.21369 0.94294 0.98070 1.02085 1.21390 1.01523 0.90509 0.98416 1.18633 0.87861 0.86548 1.10593 1.84749 1.64917 1.36483 1.35327 1.25378 0.75661 0.87071 0.80000 1.90453 1.48858 1.65927 1.36550 1.18707 0.95027 0.84258 0.98471 0.92994 1.21518 0.98202 1.01305 0.96296 1.21202 1.39075 1.05976 0.91506 0.92759 1.25663 0.94102 0.95843 1.02045 1.69957 1.37676 1.13615 1.33384 0.85427 0.78569 0.77665 0.79226 1.19597 1.19534 1.20191 0.87125 0.90056 0.91686 0.81934 0.80875 0.81518 0.84331 0.95466 0.89957 0.93836 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.53 16 2 O -0.34 -12.60 10.23 -79.30 -0.81 -13.41 16 3 C 0.10 3.52 6.65 22.58 0.15 3.67 16 4 C -0.20 -4.96 9.04 22.35 0.20 -4.75 16 5 C -0.07 -1.44 10.04 22.27 0.22 -1.22 16 6 C -0.14 -3.18 10.04 22.27 0.22 -2.95 16 7 C -0.10 -3.18 9.98 22.35 0.22 -2.95 16 8 C 0.01 0.21 4.97 22.58 0.11 0.32 16 9 O -0.30 -13.95 9.72 9.03 0.09 -13.86 16 10 C 0.47 24.82 7.10 71.23 0.51 25.33 16 11 O -0.53 -30.11 15.20 21.97 0.33 -29.78 16 12 C 0.05 2.99 2.74 -12.29 -0.03 2.96 16 13 H 0.05 2.94 8.14 -2.38 -0.02 2.92 16 14 C -0.12 -5.88 8.90 71.98 0.64 -5.24 16 15 C -0.54 -32.07 8.37 25.60 0.21 -31.85 16 16 H 0.05 3.39 6.76 -2.91 -0.02 3.37 16 17 C 0.02 1.33 5.30 84.65 0.45 1.78 16 18 N -0.91 -51.55 11.32 21.45 0.24 -51.31 16 19 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 23 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.08 1.37 7.66 -2.39 -0.02 1.35 16 25 H 0.06 1.32 7.66 -2.39 -0.02 1.30 16 26 H 0.16 2.87 6.30 -2.91 -0.02 2.85 16 27 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 28 H 0.17 2.45 8.06 -2.91 -0.02 2.42 16 29 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 4.41 6.07 -2.39 -0.01 4.39 16 32 H 0.04 1.98 8.11 -2.39 -0.02 1.96 16 33 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -73.14 289.74 7.02 -66.12 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.11 Total: 8.77 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 4.02 Total: -13.38 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 0.24 Total: -51.31 kcal Atomic # 8 Polarization: -56.66 SS G_CDS: -0.39 Total: -57.05 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -73.14 7.02 -66.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850742816.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.984 kcal (2) G-P(sol) polarization free energy of solvation -73.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds