Wall clock time and date at job start Mon Mar 30 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99912 * 2 1 4 4 H 1.48506 * 109.46849 * 240.00460 * 3 2 1 5 5 H 1.48504 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47345 * 120.00334 * 3 2 1 7 7 C 1.37875 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99937 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99987 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47335 * 174.98106 * 9 7 2 11 11 C 1.46902 * 110.99900 * 286.77557 * 10 9 7 12 Xx 1.59702 * 109.46961 * 118.74321 * 11 10 9 13 12 F 1.37001 * 109.46913 * 54.85536 * 12 11 10 14 13 F 1.37002 * 109.47008 * 174.85131 * 12 11 10 15 14 F 1.36998 * 109.47163 * 294.85367 * 12 11 10 16 15 C 1.46895 * 111.00141 * 162.81978 * 10 9 7 17 16 C 1.54888 * 110.48808 * 69.07654 * 16 10 9 18 17 C 1.55235 * 102.59016 * 156.67655 * 17 16 10 19 18 C 1.54267 * 104.23328 * 322.08591 * 18 17 16 20 19 C 1.53876 * 106.59609 * 23.60952 * 19 18 17 21 20 H 0.97000 * 120.00182 * 359.97438 * 1 2 3 22 21 H 1.09003 * 109.46953 * 54.98118 * 9 7 2 23 22 H 1.08997 * 109.47544 * 294.98493 * 9 7 2 24 23 H 1.09000 * 109.46698 * 238.74405 * 11 10 9 25 24 H 1.08995 * 109.47076 * 358.74669 * 11 10 9 26 25 H 1.09005 * 110.43554 * 306.53666 * 16 10 9 27 26 H 1.09001 * 110.75321 * 275.06924 * 17 16 10 28 27 H 1.08999 * 110.75767 * 38.43542 * 17 16 10 29 28 H 1.09001 * 110.46915 * 203.39384 * 18 17 16 30 29 H 1.09003 * 110.58339 * 80.83122 * 18 17 16 31 30 H 1.09001 * 110.03195 * 264.33072 * 19 18 17 32 31 H 1.08993 * 110.07747 * 142.91703 * 19 18 17 33 32 H 1.09000 * 110.03107 * 240.71628 * 20 19 18 34 33 H 1.09001 * 110.03156 * 119.28720 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2010 -3.6130 -0.1223 11 6 2.7419 -3.6970 -1.4856 12 9 4.8788 -4.3994 -0.5767 13 9 4.8439 -3.6863 -2.6969 14 9 4.6119 -2.2230 -1.0205 15 6 1.5779 -4.8822 0.2759 16 6 0.5022 -5.3051 -0.7551 17 6 0.4140 -6.8402 -0.5418 18 6 1.8720 -7.2713 -0.2807 19 6 2.6120 -6.0264 0.2392 20 1 -0.4850 0.8400 0.0004 21 1 0.5584 -2.5187 -0.8419 22 1 0.6938 -2.5970 0.9311 23 1 2.5119 -4.6751 -1.9080 24 1 2.2924 -2.9195 -2.1033 25 1 1.1399 -4.7956 1.2704 26 1 -0.4522 -4.8266 -0.5359 27 1 0.8274 -5.0740 -1.7695 28 1 0.0264 -7.3277 -1.4363 29 1 -0.2124 -7.0720 0.3197 30 1 2.3303 -7.6184 -1.2068 31 1 1.8998 -8.0623 0.4687 32 1 3.4294 -5.7694 -0.4345 33 1 2.9982 -6.2129 1.2413 There are 45 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 45 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238704288.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:23 Heat of formation + Delta-G solvation = 95.817950 kcal Electronic energy + Delta-G solvation = -18149.812535 eV Core-core repulsion = 14806.482331 eV Total energy + Delta-G solvation = -3343.330204 eV No. of doubly occupied orbitals = 45 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 239.119 amu Computer time = 5.85 seconds Orbital eigenvalues (eV) -37.58825 -36.43344 -35.43694 -35.21536 -33.55036 -31.30008 -27.18342 -26.72928 -25.11528 -22.89076 -20.52618 -18.83623 -17.38922 -15.20038 -14.78699 -13.87616 -13.52278 -12.67028 -11.95152 -11.84293 -11.66192 -10.87075 -10.39440 -10.04463 -9.91276 -9.78223 -9.55644 -9.52134 -9.48695 -9.20999 -8.77667 -8.69119 -8.21984 -7.52215 -7.19273 -6.75792 -6.32276 -6.16077 -5.77428 -5.56835 -5.13961 -5.04637 -5.01115 -4.21148 -2.87499 -1.04175 3.20023 4.27477 4.40292 4.53621 5.52069 5.83054 6.07636 6.14505 6.33371 6.36021 6.79195 6.83334 6.95695 6.96210 7.07322 7.16401 7.24914 7.31177 7.40860 7.54735 7.60763 7.97636 8.11936 8.17970 8.62752 8.99988 9.06167 9.16594 9.55533 10.41771 10.64989 12.05736 Molecular weight = 239.12amu Principal moments of inertia in cm(-1) A = 0.022704 B = 0.008985 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.993735 B = 3115.409556 C = 4008.353702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.039 3.961 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.468 4.468 8 H 0.106 0.894 9 C 0.189 3.811 10 N -0.513 5.513 11 C 0.490 3.510 12 F -0.623 7.623 13 F -0.627 7.627 14 F -0.418 7.418 15 C 0.090 3.910 16 C -0.164 4.164 17 C -0.116 4.116 18 C -0.123 4.123 19 C -0.155 4.155 20 H 0.256 0.744 21 H 0.010 0.990 22 H 0.041 0.959 23 H 0.085 0.915 24 H 0.104 0.896 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.130 0.870 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.060 -8.506 2.471 15.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.222 1.222 6 H -0.202 1.202 7 C -0.505 4.505 8 H 0.123 0.877 9 C 0.068 3.932 10 N -0.223 5.223 11 C 0.332 3.668 12 F -0.616 7.616 13 F -0.625 7.625 14 F -0.416 7.416 15 C -0.017 4.017 16 C -0.203 4.203 17 C -0.154 4.154 18 C -0.161 4.161 19 C -0.192 4.192 20 H 0.065 0.935 21 H 0.027 0.973 22 H 0.058 0.942 23 H 0.103 0.897 24 H 0.122 0.878 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.147 0.853 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.826 -8.294 2.950 15.556 hybrid contribution 0.387 0.852 -0.292 0.980 sum -12.439 -7.442 2.659 14.737 Atomic orbital electron populations 1.70024 1.06055 1.26381 1.52488 1.25028 0.94833 0.99611 0.96414 0.86370 0.79064 0.81429 0.79657 1.19588 1.22155 1.20171 1.22346 0.96815 0.89159 1.42188 0.87667 1.20043 0.88786 0.87294 0.97098 1.59102 1.31741 1.04768 1.26725 1.28413 0.55885 0.97508 0.84946 1.99802 1.80665 1.83839 1.97341 1.99917 1.94108 1.88256 1.80194 1.99859 1.96350 1.54999 1.90375 1.22662 0.92569 0.88502 0.97918 1.23505 1.00504 0.96186 1.00068 1.22307 0.97110 0.95596 1.00408 1.22164 0.94997 0.98377 1.00526 1.22900 1.00426 0.91773 1.04142 0.93511 0.97264 0.94157 0.89743 0.87830 0.89746 0.91051 0.91368 0.92383 0.92104 0.92199 0.92900 0.85267 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 295. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -36.97 13.29 55.43 0.74 -36.23 16 2 C 0.04 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 34.04 29.54 -169.99 -5.02 29.02 16 4 H -0.27 -10.49 7.11 56.52 0.40 -10.09 16 5 H -0.30 -10.30 7.11 56.52 0.40 -9.89 16 6 H -0.28 -10.32 7.11 56.52 0.40 -9.92 16 7 C -0.47 -20.97 8.75 -34.44 -0.30 -21.27 16 8 H 0.11 5.24 5.44 -52.48 -0.29 4.95 16 9 C 0.19 7.72 4.11 -4.98 -0.02 7.70 16 10 N -0.51 -21.06 4.51 -161.10 -0.73 -21.79 16 11 C 0.49 21.47 4.68 60.07 0.28 21.75 16 12 F -0.62 -35.23 15.92 2.25 0.04 -35.19 16 13 F -0.63 -36.32 18.50 2.25 0.04 -36.27 16 14 F -0.42 -24.11 16.19 2.25 0.04 -24.07 16 15 C 0.09 3.09 2.90 -66.06 -0.19 2.90 16 16 C -0.16 -4.80 5.55 -24.55 -0.14 -4.93 16 17 C -0.12 -2.95 6.84 -24.88 -0.17 -3.12 16 18 C -0.12 -3.41 6.80 -25.61 -0.17 -3.58 16 19 C -0.16 -5.33 5.97 -25.61 -0.15 -5.49 16 20 H 0.26 9.84 8.31 -40.82 -0.34 9.50 16 21 H 0.01 0.38 7.71 -51.93 -0.40 -0.02 16 22 H 0.04 1.61 7.86 -51.93 -0.41 1.20 16 23 H 0.09 3.36 5.13 -51.93 -0.27 3.09 16 24 H 0.10 4.42 7.27 -51.93 -0.38 4.05 16 25 H 0.08 2.74 7.97 -51.93 -0.41 2.32 16 26 H 0.07 1.98 8.14 -51.93 -0.42 1.56 16 27 H 0.07 2.05 5.94 -51.93 -0.31 1.74 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 30 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 31 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.13 5.34 4.13 -51.93 -0.21 5.12 16 33 H 0.06 1.95 8.14 -51.93 -0.42 1.52 16 LS Contribution 278.94 15.07 4.20 4.20 Total: -2.00 -109.68 278.94 -6.00 -115.69 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -4.35 Total: 9.15 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -0.96 Total: -4.50 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.01 Total: -58.03 kcal Atomic # 9 Polarization: -95.65 SS G_CDS: 0.11 Total: -95.54 kcal Atomic # 14 Polarization: 34.04 SS G_CDS: -5.02 Total: 29.02 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -109.68 -6.00 -115.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238704288.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.505 kcal (2) G-P(sol) polarization free energy of solvation -109.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -115.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.85 seconds