Wall clock time and date at job start Mon Mar 30 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99912 * 2 1 4 4 H 1.48506 * 109.46849 * 240.00460 * 3 2 1 5 5 H 1.48504 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47345 * 120.00334 * 3 2 1 7 7 C 1.37875 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99937 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99987 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47335 * 174.98106 * 9 7 2 11 11 C 1.46902 * 110.99900 * 286.77557 * 10 9 7 12 Xx 1.59702 * 109.46961 * 118.74321 * 11 10 9 13 12 F 1.37001 * 109.46913 * 54.85536 * 12 11 10 14 13 F 1.37002 * 109.47008 * 174.85131 * 12 11 10 15 14 F 1.36998 * 109.47163 * 294.85367 * 12 11 10 16 15 C 1.46895 * 111.00141 * 162.81978 * 10 9 7 17 16 C 1.54888 * 110.48808 * 69.07654 * 16 10 9 18 17 C 1.55235 * 102.59016 * 156.67655 * 17 16 10 19 18 C 1.54267 * 104.23328 * 322.08591 * 18 17 16 20 19 C 1.53876 * 106.59609 * 23.60952 * 19 18 17 21 20 H 0.97000 * 120.00182 * 359.97438 * 1 2 3 22 21 H 1.09003 * 109.46953 * 54.98118 * 9 7 2 23 22 H 1.08997 * 109.47544 * 294.98493 * 9 7 2 24 23 H 1.09000 * 109.46698 * 238.74405 * 11 10 9 25 24 H 1.08995 * 109.47076 * 358.74669 * 11 10 9 26 25 H 1.09005 * 110.43554 * 306.53666 * 16 10 9 27 26 H 1.09001 * 110.75321 * 275.06924 * 17 16 10 28 27 H 1.08999 * 110.75767 * 38.43542 * 17 16 10 29 28 H 1.09001 * 110.46915 * 203.39384 * 18 17 16 30 29 H 1.09003 * 110.58339 * 80.83122 * 18 17 16 31 30 H 1.09001 * 110.03195 * 264.33072 * 19 18 17 32 31 H 1.08993 * 110.07747 * 142.91703 * 19 18 17 33 32 H 1.09000 * 110.03107 * 240.71628 * 20 19 18 34 33 H 1.09001 * 110.03156 * 119.28720 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2010 -3.6130 -0.1223 11 6 2.7419 -3.6970 -1.4856 12 9 4.8788 -4.3994 -0.5767 13 9 4.8439 -3.6863 -2.6969 14 9 4.6119 -2.2230 -1.0205 15 6 1.5779 -4.8822 0.2759 16 6 0.5022 -5.3051 -0.7551 17 6 0.4140 -6.8402 -0.5418 18 6 1.8720 -7.2713 -0.2807 19 6 2.6120 -6.0264 0.2392 20 1 -0.4850 0.8400 0.0004 21 1 0.5584 -2.5187 -0.8419 22 1 0.6938 -2.5970 0.9311 23 1 2.5119 -4.6751 -1.9080 24 1 2.2924 -2.9195 -2.1033 25 1 1.1399 -4.7956 1.2704 26 1 -0.4522 -4.8266 -0.5359 27 1 0.8274 -5.0740 -1.7695 28 1 0.0264 -7.3277 -1.4363 29 1 -0.2124 -7.0720 0.3197 30 1 2.3303 -7.6184 -1.2068 31 1 1.8998 -8.0623 0.4687 32 1 3.4294 -5.7694 -0.4345 33 1 2.9982 -6.2129 1.2413 There are 45 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 45 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238704288.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:23 Heat of formation + Delta-G solvation = -8.572179 kcal Electronic energy + Delta-G solvation = -18154.339230 eV Core-core repulsion = 14806.482331 eV Total energy + Delta-G solvation = -3347.856900 eV No. of doubly occupied orbitals = 45 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 239.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.35099 -37.81376 -37.75279 -37.68856 -37.20534 -35.52392 -30.78657 -29.47712 -28.18408 -26.70217 -23.96764 -21.19433 -20.21774 -19.70908 -17.87550 -17.25181 -16.42124 -15.69346 -15.18054 -14.81697 -14.28605 -14.19003 -14.12475 -13.37237 -13.00668 -12.91617 -12.62772 -12.29790 -11.97935 -11.89318 -11.78984 -11.53572 -11.47237 -11.24531 -10.11876 -9.76143 -8.91210 -8.49450 -8.46568 -8.23282 -7.85302 -7.65856 -7.58451 -7.11566 -6.99821 -4.60257 0.66343 1.13709 1.19503 1.22740 1.95058 2.20021 2.73723 3.69223 3.75373 3.82376 3.99865 4.09260 4.18718 4.27213 4.38904 4.47450 4.51485 4.55344 4.60966 4.71449 4.89001 5.05021 5.14857 5.23747 5.28631 5.38485 5.56124 5.67585 5.90984 5.95687 6.42021 7.14656 Molecular weight = 239.12amu Principal moments of inertia in cm(-1) A = 0.022704 B = 0.008985 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.993735 B = 3115.409556 C = 4008.353702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.077 4.077 3 Si 0.988 3.012 4 H -0.302 1.302 5 H -0.174 1.174 6 H -0.264 1.264 7 C -0.121 4.121 8 H 0.097 0.903 9 C 0.107 3.893 10 N -0.558 5.558 11 C 0.512 3.488 12 F -0.822 7.822 13 F -0.911 7.911 14 F -0.834 7.834 15 C 0.084 3.916 16 C -0.159 4.159 17 C -0.094 4.094 18 C -0.115 4.115 19 C -0.172 4.172 20 H 0.345 0.655 21 H 0.091 0.909 22 H 0.146 0.854 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.127 0.873 26 H 0.120 0.880 27 H 0.041 0.959 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.037 0.963 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.202 2.891 9.906 33.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.261 5.261 2 C -0.285 4.285 3 Si 0.806 3.194 4 H -0.229 1.229 5 H -0.094 1.094 6 H -0.188 1.188 7 C -0.141 4.141 8 H 0.115 0.885 9 C -0.016 4.016 10 N -0.274 5.274 11 C 0.359 3.641 12 F -0.817 7.817 13 F -0.908 7.908 14 F -0.829 7.829 15 C -0.020 4.020 16 C -0.198 4.198 17 C -0.131 4.131 18 C -0.153 4.153 19 C -0.210 4.210 20 H 0.160 0.840 21 H 0.108 0.892 22 H 0.163 0.837 23 H 0.096 0.904 24 H 0.079 0.921 25 H 0.145 0.855 26 H 0.138 0.862 27 H 0.059 0.941 28 H 0.107 0.893 29 H 0.127 0.873 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -31.929 3.023 10.353 33.702 hybrid contribution 2.044 0.379 -0.866 2.252 sum -29.886 3.402 9.487 31.539 Atomic orbital electron populations 1.69779 1.06855 1.36703 1.12757 1.26862 0.97251 1.04638 0.99771 0.85199 0.79681 0.74851 0.79696 1.22856 1.09410 1.18839 1.26284 1.01254 0.95203 0.91334 0.88485 1.21370 0.90891 0.85473 1.03817 1.59241 1.33568 1.07708 1.26834 1.26959 0.55545 0.95600 0.85997 1.99811 1.86874 1.97494 1.97521 1.99918 1.93124 1.99989 1.97774 1.99841 1.90531 1.93462 1.99076 1.23033 0.93070 0.84933 1.01011 1.23495 0.99514 0.99601 0.97177 1.22288 0.94493 0.92528 1.03816 1.22120 0.96807 0.96016 1.00378 1.22809 1.00148 0.96302 1.01718 0.84028 0.89151 0.83658 0.90435 0.92059 0.85511 0.86178 0.94056 0.89326 0.87281 0.94417 0.89153 0.93554 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.61 -30.93 13.29 21.45 0.28 -30.65 16 2 C -0.08 -4.64 5.46 84.65 0.46 -4.18 16 3 Si 0.99 53.98 29.54 68.60 2.03 56.00 16 4 H -0.30 -19.65 7.11 99.48 0.71 -18.94 16 5 H -0.17 -7.04 7.11 99.48 0.71 -6.33 16 6 H -0.26 -15.04 7.11 99.48 0.71 -14.33 16 7 C -0.12 -9.25 8.75 25.60 0.22 -9.03 16 8 H 0.10 9.39 5.44 -2.91 -0.02 9.38 16 9 C 0.11 7.34 4.11 85.56 0.35 7.70 16 10 N -0.56 -47.18 4.51 -663.60 -2.99 -50.17 16 11 C 0.51 52.14 4.68 127.69 0.60 52.73 16 12 F -0.82 -118.24 15.92 44.97 0.72 -117.52 16 13 F -0.91 -137.48 18.50 44.97 0.83 -136.65 16 14 F -0.83 -119.58 16.19 44.97 0.73 -118.86 16 15 C 0.08 5.71 2.90 45.99 0.13 5.84 16 16 C -0.16 -8.62 5.55 32.01 0.18 -8.44 16 17 C -0.09 -4.34 6.84 31.79 0.22 -4.12 16 18 C -0.12 -6.74 6.80 31.32 0.21 -6.53 16 19 C -0.17 -13.22 5.97 31.32 0.19 -13.04 16 20 H 0.35 14.40 8.31 -92.71 -0.77 13.63 16 21 H 0.09 5.63 7.71 -2.39 -0.02 5.61 16 22 H 0.15 8.39 7.86 -2.39 -0.02 8.37 16 23 H 0.08 7.46 5.13 -2.39 -0.01 7.45 16 24 H 0.06 5.91 7.27 -2.39 -0.02 5.90 16 25 H 0.13 7.31 7.97 -2.38 -0.02 7.29 16 26 H 0.12 5.22 8.14 -2.39 -0.02 5.20 16 27 H 0.04 2.48 5.94 -2.39 -0.01 2.47 16 28 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 29 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 30 H 0.04 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.09 4.54 8.14 -2.39 -0.02 4.52 16 32 H 0.05 4.65 4.13 -2.39 -0.01 4.64 16 33 H 0.04 3.28 8.14 -2.39 -0.02 3.26 16 Total: -2.00 -334.07 278.94 5.27 -328.80 By element: Atomic # 1 Polarization: 47.00 SS G_CDS: 1.11 Total: 48.11 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: 2.56 Total: 20.93 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -2.71 Total: -80.82 kcal Atomic # 9 Polarization: -375.30 SS G_CDS: 2.28 Total: -373.02 kcal Atomic # 14 Polarization: 53.98 SS G_CDS: 2.03 Total: 56.00 kcal Total: -334.07 5.27 -328.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238704288.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 320.228 kcal (2) G-P(sol) polarization free energy of solvation -334.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -328.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds