Wall clock time and date at job start Mon Mar 30 2020 06:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47024 * 2 1 4 4 O 1.42897 * 109.46824 * 179.97438 * 3 2 1 5 5 C 1.35999 * 116.99765 * 180.02562 * 4 3 2 6 6 C 1.38563 * 120.07024 * 359.97438 * 5 4 3 7 7 C 1.38241 * 119.99765 * 180.02562 * 6 5 4 8 8 C 1.38255 * 120.14765 * 359.97368 * 7 6 5 9 9 C 1.38247 * 120.14468 * 0.02562 * 8 7 6 10 10 C 1.38558 * 119.99917 * 359.97438 * 9 8 7 11 11 O 1.35995 * 120.07405 * 180.02562 * 10 9 8 12 12 C 1.42894 * 117.00081 * 359.96402 * 11 10 9 13 13 C 1.52998 * 109.47488 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47262 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99950 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99832 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00349 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99966 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46982 * 89.99907 * 18 16 14 20 20 H 1.48499 * 109.47356 * 209.99838 * 18 16 14 21 21 H 1.48498 * 109.46954 * 329.99911 * 18 16 14 22 22 H 1.09004 * 109.46979 * 60.00439 * 1 2 3 23 23 H 1.08995 * 109.46902 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47439 * 300.00288 * 1 2 3 25 25 H 1.08998 * 109.46941 * 239.99691 * 2 1 3 26 26 H 1.08996 * 109.47127 * 119.99844 * 2 1 3 27 27 H 1.08996 * 109.46819 * 59.99777 * 3 2 1 28 28 H 1.09004 * 109.46884 * 299.99619 * 3 2 1 29 29 H 1.07998 * 120.00246 * 359.97438 * 6 5 4 30 30 H 1.08004 * 119.92819 * 179.97438 * 7 6 5 31 31 H 1.07998 * 119.92771 * 179.74871 * 8 7 6 32 32 H 1.07995 * 120.00081 * 179.97438 * 9 8 7 33 33 H 1.09003 * 109.46964 * 299.99453 * 12 11 10 34 34 H 1.09001 * 109.47221 * 59.99407 * 12 11 10 35 35 H 1.09003 * 109.46921 * 299.99907 * 13 12 11 36 36 H 1.09001 * 109.47024 * 59.99715 * 13 12 11 37 37 H 0.97002 * 120.00594 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0864 2.6543 0.0012 6 6 3.3332 3.8173 0.0007 7 6 3.9623 5.0482 0.0008 8 6 5.3429 5.1224 0.0020 9 6 6.1003 3.9659 0.0025 10 6 5.4760 2.7289 0.0024 11 8 6.2195 1.5902 0.0034 12 6 7.6403 1.7432 0.0038 13 6 8.3018 0.3636 0.0056 14 6 9.8002 0.5250 0.0054 15 1 10.2369 1.5127 0.0045 16 6 10.6134 -0.5884 0.0063 17 7 10.0816 -1.7912 0.0079 18 14 12.4707 -0.3884 0.0053 19 1 12.9634 -0.3338 1.4051 20 1 13.0924 -1.5417 -0.6937 21 1 12.8327 0.8693 -0.6964 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6766 1.9563 0.8899 28 1 1.6767 1.9563 -0.8901 29 1 2.2546 3.7621 -0.0006 30 1 3.3741 5.9540 0.0000 31 1 5.8307 6.0859 -0.0021 32 1 7.1785 4.0265 0.0030 33 1 7.9468 2.2923 -0.8865 34 1 7.9462 2.2937 0.8935 35 1 7.9953 -0.1851 0.8962 36 1 7.9959 -0.1872 -0.8838 37 1 10.6537 -2.5745 0.0090 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019503048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:20 Heat of formation + Delta-G solvation = -71.734037 kcal Electronic energy + Delta-G solvation = -17621.696274 eV Core-core repulsion = 14750.156982 eV Total energy + Delta-G solvation = -2871.539292 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.23131 -38.26039 -36.65433 -33.97048 -33.31991 -30.58019 -30.07781 -28.92851 -26.56232 -25.05155 -22.79628 -22.04259 -21.37862 -20.36456 -18.36504 -17.12738 -16.29466 -16.10032 -15.92070 -15.22928 -14.67477 -14.54004 -14.43116 -14.04470 -14.03192 -12.89199 -12.61558 -12.42339 -12.29626 -12.22446 -11.59373 -11.56512 -11.42748 -11.26957 -10.91983 -10.86182 -10.72519 -10.62087 -10.51382 -9.80024 -9.61971 -9.25696 -8.55335 -8.41322 -7.49365 -6.06651 -4.11299 1.46879 1.65987 3.29327 3.29601 3.35346 3.38297 3.84691 3.93536 4.43459 4.74543 4.77604 5.00329 5.07572 5.09970 5.14592 5.26338 5.29549 5.36061 5.47857 5.56287 5.62943 5.79045 5.85899 5.94688 6.08546 6.08802 6.09139 6.36447 6.44016 6.62488 6.74644 6.89009 7.38498 7.60468 7.70057 7.87697 8.14695 8.28287 8.94433 9.52720 11.04915 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022161 B = 0.004549 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.185297 B = 6153.440494 C = 7380.272105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.059 3.941 4 O -0.301 6.301 5 C 0.091 3.909 6 C -0.177 4.177 7 C -0.134 4.134 8 C -0.116 4.116 9 C -0.180 4.180 10 C 0.118 3.882 11 O -0.305 6.305 12 C 0.064 3.936 13 C 0.026 3.974 14 C -0.526 4.526 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.889 5.889 18 Si 0.898 3.102 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.128 0.872 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.137 0.863 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.813 10.160 -0.022 19.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.016 4.016 4 O -0.215 6.215 5 C 0.045 3.955 6 C -0.196 4.196 7 C -0.152 4.152 8 C -0.135 4.135 9 C -0.199 4.199 10 C 0.071 3.929 11 O -0.218 6.218 12 C -0.010 4.010 13 C -0.011 4.011 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.527 5.527 18 Si 0.726 3.274 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.146 0.854 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.155 0.845 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.733 9.549 -0.027 19.266 hybrid contribution 1.018 0.424 0.010 1.103 sum -15.715 9.972 -0.018 18.612 Atomic orbital electron populations 1.21683 0.94531 1.02377 1.01912 1.21481 0.95616 0.95072 1.04151 1.22812 0.79357 0.98662 1.00812 1.86220 1.20253 1.26059 1.88990 1.18290 0.89374 0.84996 1.02820 1.20969 0.99452 0.91719 1.07418 1.20717 0.94527 0.96653 1.03347 1.20826 0.93668 0.97715 1.01260 1.21213 1.00932 0.91137 1.06584 1.18498 0.88518 0.87191 0.98679 1.86277 1.20928 1.27344 1.87234 1.23333 0.74973 1.03217 0.99492 1.19108 0.94127 0.88959 0.98913 1.20982 0.90370 0.92913 1.52169 0.92377 1.24987 0.99105 0.95126 0.94956 1.69981 1.35414 0.97594 1.49745 0.86494 0.84947 0.77781 0.78193 1.20516 1.21065 1.19769 0.92537 0.91814 0.92541 0.90632 0.90633 0.92462 0.92456 0.85414 0.86164 0.85993 0.84520 0.93216 0.93224 0.95390 0.95382 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.13 -1.32 6.30 -26.73 -0.17 -1.49 16 3 C 0.06 0.70 4.74 37.16 0.18 0.87 16 4 O -0.30 -5.14 9.92 -34.24 -0.34 -5.48 16 5 C 0.09 1.54 6.70 -39.12 -0.26 1.28 16 6 C -0.18 -2.38 9.04 -39.46 -0.36 -2.74 16 7 C -0.13 -1.67 10.04 -39.57 -0.40 -2.06 16 8 C -0.12 -1.56 10.04 -39.57 -0.40 -1.95 16 9 C -0.18 -2.91 9.04 -39.46 -0.36 -3.27 16 10 C 0.12 2.24 6.70 -39.12 -0.26 1.98 16 11 O -0.30 -6.78 9.92 -34.23 -0.34 -7.12 16 12 C 0.06 1.43 4.68 37.16 0.17 1.60 16 13 C 0.03 0.71 5.34 -27.88 -0.15 0.56 16 14 C -0.53 -14.93 9.11 -34.44 -0.31 -15.25 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 18 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 22 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 28 H 0.06 0.59 7.66 -51.93 -0.40 0.20 16 29 H 0.13 1.36 6.30 -52.49 -0.33 1.03 16 30 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.14 2.13 6.30 -52.49 -0.33 1.80 16 33 H 0.05 1.05 7.67 -51.93 -0.40 0.65 16 34 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 313.50 15.07 4.72 4.72 Total: -1.00 -31.80 313.50 -7.88 -39.68 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -5.60 Total: -2.56 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -2.04 Total: -19.59 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.74 Total: -26.13 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.68 Total: -12.60 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.80 -7.88 -39.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019503048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.053 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds