Wall clock time and date at job start Mon Mar 30 2020 06:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47024 * 2 1 4 4 O 1.42897 * 109.46824 * 179.97438 * 3 2 1 5 5 C 1.35999 * 116.99765 * 180.02562 * 4 3 2 6 6 C 1.38563 * 120.07024 * 359.97438 * 5 4 3 7 7 C 1.38241 * 119.99765 * 180.02562 * 6 5 4 8 8 C 1.38255 * 120.14765 * 359.97368 * 7 6 5 9 9 C 1.38247 * 120.14468 * 0.02562 * 8 7 6 10 10 C 1.38558 * 119.99917 * 359.97438 * 9 8 7 11 11 O 1.35995 * 120.07405 * 180.02562 * 10 9 8 12 12 C 1.42894 * 117.00081 * 359.96402 * 11 10 9 13 13 C 1.52998 * 109.47488 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47262 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99950 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99832 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00349 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99966 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46982 * 89.99907 * 18 16 14 20 20 H 1.48499 * 109.47356 * 209.99838 * 18 16 14 21 21 H 1.48498 * 109.46954 * 329.99911 * 18 16 14 22 22 H 1.09004 * 109.46979 * 60.00439 * 1 2 3 23 23 H 1.08995 * 109.46902 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47439 * 300.00288 * 1 2 3 25 25 H 1.08998 * 109.46941 * 239.99691 * 2 1 3 26 26 H 1.08996 * 109.47127 * 119.99844 * 2 1 3 27 27 H 1.08996 * 109.46819 * 59.99777 * 3 2 1 28 28 H 1.09004 * 109.46884 * 299.99619 * 3 2 1 29 29 H 1.07998 * 120.00246 * 359.97438 * 6 5 4 30 30 H 1.08004 * 119.92819 * 179.97438 * 7 6 5 31 31 H 1.07998 * 119.92771 * 179.74871 * 8 7 6 32 32 H 1.07995 * 120.00081 * 179.97438 * 9 8 7 33 33 H 1.09003 * 109.46964 * 299.99453 * 12 11 10 34 34 H 1.09001 * 109.47221 * 59.99407 * 12 11 10 35 35 H 1.09003 * 109.46921 * 299.99907 * 13 12 11 36 36 H 1.09001 * 109.47024 * 59.99715 * 13 12 11 37 37 H 0.97002 * 120.00594 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0864 2.6543 0.0012 6 6 3.3332 3.8173 0.0007 7 6 3.9623 5.0482 0.0008 8 6 5.3429 5.1224 0.0020 9 6 6.1003 3.9659 0.0025 10 6 5.4760 2.7289 0.0024 11 8 6.2195 1.5902 0.0034 12 6 7.6403 1.7432 0.0038 13 6 8.3018 0.3636 0.0056 14 6 9.8002 0.5250 0.0054 15 1 10.2369 1.5127 0.0045 16 6 10.6134 -0.5884 0.0063 17 7 10.0816 -1.7912 0.0079 18 14 12.4707 -0.3884 0.0053 19 1 12.9634 -0.3338 1.4051 20 1 13.0924 -1.5417 -0.6937 21 1 12.8327 0.8693 -0.6964 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6766 1.9563 0.8899 28 1 1.6767 1.9563 -0.8901 29 1 2.2546 3.7621 -0.0006 30 1 3.3741 5.9540 0.0000 31 1 5.8307 6.0859 -0.0021 32 1 7.1785 4.0265 0.0030 33 1 7.9468 2.2923 -0.8865 34 1 7.9462 2.2937 0.8935 35 1 7.9953 -0.1851 0.8962 36 1 7.9959 -0.1872 -0.8838 37 1 10.6537 -2.5745 0.0090 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019503048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:19 Heat of formation + Delta-G solvation = -90.157649 kcal Electronic energy + Delta-G solvation = -17622.495182 eV Core-core repulsion = 14750.156982 eV Total energy + Delta-G solvation = -2872.338200 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.45890 -39.61166 -37.89924 -35.47573 -34.79973 -32.46565 -31.22651 -30.29405 -27.43573 -27.00478 -24.18310 -23.21676 -22.68355 -21.76787 -19.67866 -18.68315 -17.90234 -17.37504 -17.23937 -16.77099 -16.51140 -15.70417 -15.66114 -15.11117 -15.07263 -14.32780 -14.20765 -14.06755 -13.41718 -13.13538 -13.09502 -13.00962 -12.67521 -12.59570 -12.40076 -12.22430 -12.10623 -11.80745 -11.62813 -11.58828 -11.51106 -11.40291 -10.62814 -9.69791 -8.76577 -8.26783 -6.41377 0.33308 0.49893 1.40482 1.43477 1.54658 2.25455 2.28634 2.51593 2.79484 3.07264 3.81348 3.94022 3.97825 4.05896 4.12797 4.25414 4.25891 4.29110 4.47159 4.48226 4.55689 4.55889 4.72947 4.76586 4.83997 5.12109 5.16897 5.27014 5.30654 5.34363 5.37800 5.44936 5.54952 5.67457 5.83694 6.04934 6.25988 6.71637 6.74647 7.28969 8.86635 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022161 B = 0.004549 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.185297 B = 6153.440494 C = 7380.272105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 C 0.052 3.948 4 O -0.339 6.339 5 C 0.072 3.928 6 C -0.171 4.171 7 C -0.117 4.117 8 C -0.116 4.116 9 C -0.186 4.186 10 C 0.065 3.935 11 O -0.338 6.338 12 C 0.084 3.916 13 C 0.030 3.970 14 C -0.547 4.547 15 H 0.072 0.928 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.979 3.021 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.258 1.258 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.160 0.840 30 H 0.164 0.836 31 H 0.156 0.844 32 H 0.135 0.865 33 H 0.060 0.940 34 H 0.060 0.940 35 H -0.005 1.005 36 H -0.005 1.005 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.566 13.176 -0.024 21.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C -0.022 4.022 4 O -0.254 6.254 5 C 0.027 3.973 6 C -0.189 4.189 7 C -0.135 4.135 8 C -0.134 4.134 9 C -0.205 4.205 10 C 0.020 3.980 11 O -0.253 6.253 12 C 0.010 3.990 13 C -0.007 4.007 14 C -0.585 4.585 15 H 0.091 0.909 16 C -0.198 4.198 17 N -0.571 5.571 18 Si 0.802 3.198 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.182 1.182 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.178 0.822 30 H 0.182 0.818 31 H 0.174 0.826 32 H 0.153 0.847 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.013 0.987 36 H 0.013 0.987 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.515 12.591 -0.029 21.572 hybrid contribution 1.072 -0.448 0.011 1.162 sum -16.443 12.143 -0.018 20.441 Atomic orbital electron populations 1.21649 0.91826 1.03218 1.03037 1.21536 0.97846 0.94370 1.02765 1.23130 0.77030 0.99658 1.02426 1.86180 1.23015 1.26984 1.89259 1.18640 0.89058 0.86199 1.03449 1.21385 1.00911 0.90805 1.05810 1.21283 0.94476 0.97732 0.99988 1.21250 0.94313 0.97903 0.99903 1.21377 1.01263 0.91296 1.06526 1.18987 0.89392 0.86999 1.02662 1.86173 1.20372 1.29973 1.88810 1.22857 0.75853 0.99954 1.00372 1.18944 0.94887 0.91214 0.95696 1.21404 0.90963 0.93816 1.52268 0.90936 1.26088 1.05118 0.94534 0.94041 1.70137 1.37737 0.98698 1.50569 0.85240 0.77524 0.78306 0.78710 1.19461 1.20609 1.18169 0.91367 0.91193 0.91376 0.92082 0.92088 0.90662 0.90649 0.82219 0.81819 0.82642 0.84705 0.92214 0.92203 0.98695 0.98688 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.91 71.98 0.71 -1.21 16 2 C -0.13 -2.71 6.30 30.60 0.19 -2.51 16 3 C 0.05 1.19 4.74 71.98 0.34 1.53 16 4 O -0.34 -11.94 9.92 -79.68 -0.79 -12.73 16 5 C 0.07 2.44 6.70 22.57 0.15 2.59 16 6 C -0.17 -4.11 9.04 22.35 0.20 -3.91 16 7 C -0.12 -2.39 10.04 22.27 0.22 -2.17 16 8 C -0.12 -2.72 10.04 22.28 0.22 -2.50 16 9 C -0.19 -5.92 9.04 22.35 0.20 -5.71 16 10 C 0.07 2.53 6.70 22.57 0.15 2.68 16 11 O -0.34 -16.07 9.92 -79.63 -0.79 -16.86 16 12 C 0.08 3.94 4.68 71.98 0.34 4.28 16 13 C 0.03 1.72 5.34 29.85 0.16 1.88 16 14 C -0.55 -31.87 9.11 25.60 0.23 -31.64 16 15 H 0.07 3.92 7.74 -2.91 -0.02 3.89 16 16 C 0.00 0.04 5.46 84.65 0.46 0.50 16 17 N -0.93 -58.28 13.29 21.45 0.28 -57.99 16 18 Si 0.98 44.29 29.54 68.60 2.03 46.32 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 22 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 1.42 7.66 -2.39 -0.02 1.40 16 28 H 0.08 1.42 7.66 -2.39 -0.02 1.40 16 29 H 0.16 2.72 6.30 -2.91 -0.02 2.71 16 30 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 31 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 32 H 0.14 4.18 6.30 -2.91 -0.02 4.17 16 33 H 0.06 2.62 7.67 -2.39 -0.02 2.60 16 34 H 0.06 2.62 7.66 -2.39 -0.02 2.60 16 35 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 36 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 37 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -73.21 313.50 5.36 -67.85 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.03 Total: 9.60 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 3.59 Total: -36.18 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: 0.28 Total: -57.99 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -1.58 Total: -29.60 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -73.21 5.36 -67.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019503048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.310 kcal (2) G-P(sol) polarization free energy of solvation -73.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds